mRNA_M-pyrifera_M_contig7709.18168.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7709.18168.1
Unique NamemRNA_M-pyrifera_M_contig7709.18168.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7709.18168.1 vs. uniprot
Match: D8LQ85_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ85_ECTSI)

HSP 1 Score: 275 bits (703), Expect = 1.070e-88
Identity = 127/166 (76.51%), Postives = 142/166 (85.54%), Query Frame = 1
Query:   31 FVSQWYLSPRQHVIETAGSILVLSPLVYLYFKLCRTRLQLRRAAGTFNLTKTPFVMKLWGAGLVGHVAAGAFLKFTMNELISHPAYLWQPCHVHSLVMGLCVFSESELSLLVMHVSTTLWWGPFLAFVAPSLPNDPVEVAIFWGQHTLMLMVPFFRLLLGGQWMYR 528
            F+SQWYLSPRQHV+E A SILVLSPLVYLYFKLCR RL+L+RAAG F+  +   +MKLWGA L+G V AGAFLKFT  ELISHPAYLWQPCHVHSLVMGLC F E+E SLLVMHV+TTLWWGPFLAFVAPSLP DPVE+AIFW QH LML+ PF RL +G +W+YR
Sbjct:  119 FISQWYLSPRQHVVEMALSILVLSPLVYLYFKLCRARLRLKRAAGAFDAKRPSLLMKLWGAALLGLVGAGAFLKFTKQELISHPAYLWQPCHVHSLVMGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTDPVEIAIFWAQHALMLLAPFLRLTVGTRWLYR 284          
BLAST of mRNA_M-pyrifera_M_contig7709.18168.1 vs. uniprot
Match: A0A835Z0S0_9STRA (TMEM164 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0S0_9STRA)

HSP 1 Score: 174 bits (440), Expect = 2.010e-50
Identity = 80/167 (47.90%), Postives = 108/167 (64.67%), Query Frame = 1
Query:   28 AFVSQWYLSPRQHVIETAGSILVLSPLVYLYFKLCRTRLQLRRAAGTFNLTKTPFVMKLWGAGLVGHVAAGAFLKFTMNELISHPAYLWQPCHVHSLVMGLCVFSESELSLLVMHVSTTLWWGPFLAFVAPSLPNDPVEVAIFWGQHTLMLMVPFFRLLLGGQWMYR 528
            A++S WY++P+QH+IET  S++VL+PLV  Y++ C   L+           + P + K+WG  L+  V    + K+  N + SHPAYL QPCHVHS+ M L  FS++  S  ++HVS TLWWGPFLAFVAP LP   +EV +FW QHTLML +   R+L G  WMYR
Sbjct:   54 AYLSAWYITPQQHIIETIVSLVVLAPLVGFYYRKCSEGLRAHAVQDRTEKKRFPVLQKVWGGLLLLSVVLQVWFKWNYNHVSSHPAYLAQPCHVHSVAMALTAFSDASWSRGLLHVSATLWWGPFLAFVAPDLPASALEVVVFWIQHTLMLCIIIARVLTGSNWMYR 220          
BLAST of mRNA_M-pyrifera_M_contig7709.18168.1 vs. uniprot
Match: A0A7S2V140_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V140_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.500e-26
Identity = 60/168 (35.71%), Postives = 90/168 (53.57%), Query Frame = 1
Query:    7 PPSLSPDAFVSQWYLSPRQHVIETAGSILVLSPLVYLYFKLCRTRLQLRRAAGTFNLTKTP---FVMKLWGAGLVGHVAAGAFLKFTMNELISHPAYLWQPCHVHSLVMGLCVFSE-SELSLLVMHVSTTLWWGPFLAFVAPSLPNDPVEVAIFWGQHTLMLMVPFFR 498
            PP+++ + +   W+LSP  HV+E   S++V +P++    K C   L+ + A         P    + K+W   L+        LK+      SHPAYL QPCH+ + +MGL  F+  + L+  + HV  T WWGP LA VAP LP    EV +F+ QH LM+ + +FR
Sbjct:   70 PPTVASE-YHGWWFLSPEHHVLEFLASLIVYTPILLFCLKQCAKSLRYQTALQQMEGITIPQPDLLQKVWAVVLLVIATLQIRLKYISLNPASHPAYLLQPCHITTFMMGLITFARPTMLTEALFHVVATTWWGPLLALVAPDLPASSFEVFLFYLQHYLMMGIIWFR 236          
BLAST of mRNA_M-pyrifera_M_contig7709.18168.1 vs. uniprot
Match: A0A1Y1LL12_PHOPY (Uncharacterized protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LL12_PHOPY)

HSP 1 Score: 62.0 bits (149), Expect = 2.990e-8
Identity = 54/164 (32.93%), Postives = 78/164 (47.56%), Query Frame = 1
Query:   46 YLSPRQHVIETAGSILVLSPLVYLYFKLCRTRLQLRRAA-----GTFNLTKTPFVMKLWGAGLVGHVAAGAFLKFTMNELISHPAYLWQPCHVHSLV-MGLCVFSESELSLLVMHVSTTLWWGPFLAFVAPSLPND--PVEVAIFWGQHTLMLMVPFFRLLLGG 513
            YLSP    IET   ++VLS  + L FK    R+ L RAA      +        +  +WG   +G+       KF+   +I    YL  PCHV + + + L   S S++   V  +      GP LAF+ P       P+E +I+W QH LM +VP++ L LGG
Sbjct:   23 YLSPLWQKIET---VIVLSAAIGL-FKWGYDRISLPRAAYVRRDRSGRRALLVLMSIIWGME-IGY-------KFSSKTVI----YLLNPCHVTTAIQIYLLAASPSDMVTAVFRIQLNFLNGPLLAFIFPETDTRILPLEASIYWIQHGLMFVVPYYLLRLGG 170          
BLAST of mRNA_M-pyrifera_M_contig7709.18168.1 vs. uniprot
Match: A0A7J7A957_9COLE (Uncharacterized protein n=2 Tax=Lampyridae TaxID=7049 RepID=A0A7J7A957_9COLE)

HSP 1 Score: 59.7 bits (143), Expect = 2.150e-7
Identity = 55/166 (33.13%), Postives = 79/166 (47.59%), Query Frame = 1
Query:   46 YLSPRQHVIETAGSILVLSPLVYLYFKLCRTRLQLRRAA-------GTFNLTKTPFVMKLWGAGLVGHVAAGAFLKFTMNELISHPAYLWQPCHVHSLV-MGLCVFSESELSLLVMHVSTTLWWGPFLAFVAPSLPND--PVEVAIFWGQHTLMLMVPFFRLLLGG 513
            YLSP++  IET   ++VL   + L FK    R+ L  AA       G   L     +  +WG   +G+       KF+   +I    YL  PCHV + + + L   S + +   V  +   L  GP LAF+ P       P+E AI+W QH LM +VP++ L LGG
Sbjct:   42 YLSPKRRRIET---VIVLIAAIVL-FKWGYNRISLPTAAYIRRDRGGRRALLVLMSI--IWGME-IGY-------KFSSKTVI----YLLNPCHVTTAIQIYLLAASPNNIVTAVFRIHLYLLNGPLLAFIFPETDTRILPLEAAIYWIQHGLMFVVPYYLLRLGG 189          
BLAST of mRNA_M-pyrifera_M_contig7709.18168.1 vs. uniprot
Match: A0A485LL75_9STRA (Aste57867_22899 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LL75_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.610e-7
Identity = 47/172 (27.33%), Postives = 74/172 (43.02%), Query Frame = 1
Query:   22 PDAFVSQWYLSPRQHVIETAGSILVLSPL-VYLYFKLCRTRLQLRRA----AGTFNLTKTPFVMKLWGAGLV--GHVAAGAFLKFTMNELISHPAYLWQPCHVHSLVMGLCVFSESELSLLVMHVSTTLWWGPFLAFVAPSLPNDPV--EVAIFWGQHTLMLMVPFFRLLLG 510
            P A  S W+L+PRQH IET   +++  P+ ++ Y K  + RL   +A    A  F+ T     M  + A      H   G  L            Y++QPCHV   V+     +  + +  +  V   + WG   A   P + +     +V  F+ +H +ML+VP    L G
Sbjct:   29 PAALRSVWFLTPRQHAIETLSYLVIFIPMSIWAYKKALQHRLWKTQASIRPATVFDWTLAALTMASFAAVCYYKSHSTKGWRLL-----------YMFQPCHVEVFVLACLCVARGKWANFLFQVYVPITWGAVAALAFPDMSDYTYFGDVFNFYYEHYVMLVVPIVLCLTG 189          
BLAST of mRNA_M-pyrifera_M_contig7709.18168.1 vs. uniprot
Match: UPI001D086408 (transmembrane protein 164 n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D086408)

HSP 1 Score: 58.2 bits (139), Expect = 8.220e-7
Identity = 34/91 (37.36%), Postives = 49/91 (53.85%), Query Frame = 1
Query:  250 KFTMNELISHPAYLWQPCHVHSLV-MGLCVFSESELSLLVMHVSTTLWWGPFLAFVAPSLPND--PVEVAIFWGQHTLMLMVPFFRLLLGG 513
            KF+   +I    YL  PCHV + + + L   + S+L   V  V      GP LAF+ P       P+E AI+W QH +M++VP++ L LGG
Sbjct:  131 KFSSRTVI----YLLNPCHVTTAIQIYLLAAAPSDLVTAVFRVHMNFLNGPLLAFLFPETDTRILPLEAAIYWIQHGMMIVVPYYLLRLGG 217          
BLAST of mRNA_M-pyrifera_M_contig7709.18168.1 vs. uniprot
Match: UPI001E2757BF (transmembrane protein 164 n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E2757BF)

HSP 1 Score: 57.8 bits (138), Expect = 9.630e-7
Identity = 38/124 (30.65%), Postives = 60/124 (48.39%), Query Frame = 1
Query:  151 RRAAGTFNLTKTPFVMKLWGAGLVGHVAAGAFLKFTMNELISHPAYLWQPCHVHSLV-MGLCVFSESELSLLVMHVSTTLWWGPFLAFVAPSLPND--PVEVAIFWGQHTLMLMVPFFRLLLGG 513
            +R  G F +     +  +WG   +G+       KF+   +I    YL  PCHV + + + L     S+L+  +  +   L  GP LAF+ P       P+E AI+W QH +M +VP++ L L G
Sbjct:   68 KREMGNFKIVLLIIMCVVWGME-IGY-------KFSSRTVI----YLLNPCHVTTAIQIYLLAAVPSKLTTAIFRIHMNLLNGPLLAFLFPETDTRILPLESAIYWIQHGMMFVVPYYLLFLRG 179          
BLAST of mRNA_M-pyrifera_M_contig7709.18168.1 vs. uniprot
Match: W4GTI4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GTI4_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.200e-6
Identity = 40/175 (22.86%), Postives = 77/175 (44.00%), Query Frame = 1
Query:   22 PDAFVSQWYLSPRQHVIETAGSILVLSPLVYLYFKLCRTRLQLRRAAGTFNLTKTPFVMKLWGAGLVGHVAAGAFLKFTMNELIS----HPAYLWQPCHVHSLVMGLCVFSESELSLLVMHVSTTLWWGPFLAFVAPSLPNDPV---EVAIFWGQHTLMLMVPFFRLLLGGQWMY 525
            P    S WYL+PRQH +ET   +++ +P+ Y+  K      + +         + P  +     G++G +   +FL     +  S       Y++QPCHV +  + +   +    +  +  V   + W    A   P   +D +   ++  F+ +H LML++P   L + G++ Y
Sbjct:   29 PATLRSVWYLTPRQHAMETVCYVMIFAPMCYVALKQALNHSKWKNQ----RPIRAPTALD----GVLGAITMSSFLGVCYYKAHSVNGWRLLYMFQPCHVMTFTLAILCIARGRTANFIFQVYVAMTWSSDCALAFPDT-SDYIYIGDIYNFYIEHYLMLVIPVL-LCVSGRYEY 193          
BLAST of mRNA_M-pyrifera_M_contig7709.18168.1 vs. uniprot
Match: UPI00083C000D (transmembrane protein 164 n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083C000D)

HSP 1 Score: 57.4 bits (137), Expect = 1.300e-6
Identity = 34/91 (37.36%), Postives = 49/91 (53.85%), Query Frame = 1
Query:  250 KFTMNELISHPAYLWQPCHVHS-LVMGLCVFSESELSLLVMHVSTTLWWGPFLAFVAPSLPND--PVEVAIFWGQHTLMLMVPFFRLLLGG 513
            KF+   +I    YL  PCHV + L + L   S +++   V      L  GP LAF+ P   +   P+E AI+W QH +M +VP++ L LGG
Sbjct:   85 KFSSRTVI----YLLNPCHVTTALQIYLLAASPNKMVTAVFRFHLNLLNGPLLAFIFPETDSRILPLEAAIYWVQHGMMFVVPYYLLRLGG 171          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7709.18168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ85_ECTSI1.070e-8876.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0S0_9STRA2.010e-5047.90TMEM164 family-domain-containing protein n=1 Tax=T... [more]
A0A7S2V140_9STRA1.500e-2635.71Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1Y1LL12_PHOPY2.990e-832.93Uncharacterized protein n=1 Tax=Photinus pyralis T... [more]
A0A7J7A957_9COLE2.150e-733.13Uncharacterized protein n=2 Tax=Lampyridae TaxID=7... [more]
A0A485LL75_9STRA3.610e-727.33Aste57867_22899 protein n=1 Tax=Aphanomyces stella... [more]
UPI001D0864088.220e-737.36transmembrane protein 164 n=1 Tax=Chrysoperla carn... [more]
UPI001E2757BF9.630e-730.65transmembrane protein 164 n=1 Tax=Harmonia axyridi... [more]
W4GTI4_9STRA1.200e-622.86Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
UPI00083C000D1.300e-637.36transmembrane protein 164 n=1 Tax=Nicrophorus vesp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7709contigM-pyrifera_M_contig7709:1215..1745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size531
Cds size531
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.7501702-CDS-M-pyrifera_M_contig7709:1214..17451622816671.7501702-CDS-M-pyrifera_M_contig7709:1214..1745Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7709 1215..1745 -
1692278110.5843258-CDS-M-pyrifera_M_contig7709:1214..17451692278110.5843258-CDS-M-pyrifera_M_contig7709:1214..1745Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7709 1215..1745 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7709.18168.1prot_M-pyrifera_M_contig7709.18168.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7709 1215..1745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7709.18168.1

>prot_M-pyrifera_M_contig7709.18168.1 ID=prot_M-pyrifera_M_contig7709.18168.1|Name=mRNA_M-pyrifera_M_contig7709.18168.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=177bp
SPPPSLSPDAFVSQWYLSPRQHVIETAGSILVLSPLVYLYFKLCRTRLQL
RRAAGTFNLTKTPFVMKLWGAGLVGHVAAGAFLKFTMNELISHPAYLWQP
CHVHSLVMGLCVFSESELSLLVMHVSTTLWWGPFLAFVAPSLPNDPVEVA
IFWGQHTLMLMVPFFRLLLGGQWMYR*
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mRNA from alignment at M-pyrifera_M_contig7709:1215..1745-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7709.18168.1 ID=mRNA_M-pyrifera_M_contig7709.18168.1|Name=mRNA_M-pyrifera_M_contig7709.18168.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=531bp|location=Sequence derived from alignment at M-pyrifera_M_contig7709:1215..1745- (Macrocystis pyrifera P11B4 male)
TCCCCTCCCCCCTCTCTCTCCCCAGACGCTTTCGTTTCCCAGTGGTACCT TAGCCCCAGACAGCACGTGATCGAGACGGCCGGGTCGATCCTCGTCCTGA GCCCCCTGGTGTACCTCTACTTCAAGCTCTGTCGGACGCGCTTGCAACTA CGGCGCGCGGCGGGCACCTTCAATCTCACCAAGACGCCGTTCGTCATGAA GCTGTGGGGGGCCGGTCTCGTGGGACACGTCGCGGCCGGGGCGTTCCTGA AGTTCACGATGAACGAGCTTATCTCCCATCCGGCGTACTTGTGGCAGCCG TGCCACGTGCACAGCCTCGTGATGGGCCTGTGCGTGTTCAGCGAGTCGGA GCTGTCCCTCTTGGTGATGCACGTTTCGACGACGCTATGGTGGGGCCCGT TCCTAGCCTTCGTGGCGCCGTCTCTGCCGAACGACCCCGTCGAGGTCGCG ATATTTTGGGGGCAGCACACGCTGATGCTGATGGTGCCGTTCTTCAGGCT GCTGTTGGGGGGGCAGTGGATGTATAGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7709:1215..1745-

>mRNA_M-pyrifera_M_contig7709.18168.1 ID=mRNA_M-pyrifera_M_contig7709.18168.1|Name=mRNA_M-pyrifera_M_contig7709.18168.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1062bp|location=Sequence derived from alignment at M-pyrifera_M_contig7709:1215..1745- (Macrocystis pyrifera P11B4 male)
TCCCCTCCCCCCTCTCTCTCCCCAGACGCTTTCGTTTCCCAGTGGTACCT
TAGCCCCAGACAGCACGTGATCGAGACGGCCGGGTCGATCCTCGTCCTGA
GCCCCCTGGTGTACCTCTACTTCAAGCTCTGTCGGACGCGCTTGCAACTA
CGGCGCGCGGCGGGCACCTTCAATCTCACCAAGACGCCGTTCGTCATGAA
GCTGTGGGGGGCCGGTCTCGTGGGACACGTCGCGGCCGGGGCGTTCCTGA
AGTTCACGATGAACGAGCTTATCTCCCATCCGGCGTACTTGTGGCAGCCG
TGCCACGTGCACAGCCTCGTGATGGGCCTGTGCGTGTTCAGCGAGTCGGA
GCTGTCCCTCTTGGTGATGCACGTTTCGACGACGCTATGGTGGGGCCCGT
TCCTAGCCTTCGTGGCGCCGTCTCTGCCGAACGACCCCGTCGAGGTCGCG
ATATTTTGGGGGCAGCACACGCTGATGCTGATGGTGCCGTTCTTCAGGCT
GCTGTTGGGGGGGCAGTGGATGTATAGGTGATCCCCTCCCCCCTCTCTCT
CCCCAGACGCTTTCGTTTCCCAGTGGTACCTTAGCCCCAGACAGCACGTG
ATCGAGACGGCCGGGTCGATCCTCGTCCTGAGCCCCCTGGTGTACCTCTA
CTTCAAGCTCTGTCGGACGCGCTTGCAACTACGGCGCGCGGCGGGCACCT
TCAATCTCACCAAGACGCCGTTCGTCATGAAGCTGTGGGGGGCCGGTCTC
GTGGGACACGTCGCGGCCGGGGCGTTCCTGAAGTTCACGATGAACGAGCT
TATCTCCCATCCGGCGTACTTGTGGCAGCCGTGCCACGTGCACAGCCTCG
TGATGGGCCTGTGCGTGTTCAGCGAGTCGGAGCTGTCCCTCTTGGTGATG
CACGTTTCGACGACGCTATGGTGGGGCCCGTTCCTAGCCTTCGTGGCGCC
GTCTCTGCCGAACGACCCCGTCGAGGTCGCGATATTTTGGGGGCAGCACA
CGCTGATGCTGATGGTGCCGTTCTTCAGGCTGCTGTTGGGGGGGCAGTGG
ATGTATAGGTGA
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