mRNA_M-pyrifera_M_contig77072.18165.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77072.18165.1
Unique NamemRNA_M-pyrifera_M_contig77072.18165.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig77072.18165.1 vs. uniprot
Match: A0A812KJA5_9DINO (Calmodulin n=4 Tax=Sar TaxID=2698737 RepID=A0A812KJA5_9DINO)

HSP 1 Score: 159 bits (403), Expect = 9.760e-46
Identity = 81/126 (64.29%), Postives = 95/126 (75.40%), Query Frame = 1
Query:   31 IDRDKTGVVDLDEFYRFFELERGPFADRVFGIADE--------------DASGEIEFREFVISIWNYCSMDVRSLIRFSFDLFDADLSGYLDVAEMFELLAEVYGESYESNLRQKRLIRELDDNGD 366
            +D+D TGVVDLDEFYRFF+LER PFADRVF I  E              DASGEI FREFV+ +WNY S+D++SL+RF FDLFD DLSGYLD+AEM ELL EVYG+S+E+N R K L+ ELD NGD
Sbjct:    1 MDKDGTGVVDLDEFYRFFKLERSPFADRVFSIMGEPFVASRRLTNRENDDASGEISFREFVVCLWNYLSLDIKSLMRFCFDLFDQDLSGYLDIAEMHELLREVYGDSFETNGRLKHLMEELDANGD 126          
BLAST of mRNA_M-pyrifera_M_contig77072.18165.1 vs. uniprot
Match: A0A7S1G3P1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G3P1_9STRA)

HSP 1 Score: 126 bits (317), Expect = 6.610e-33
Identity = 57/122 (46.72%), Postives = 87/122 (71.31%), Query Frame = 1
Query:    1 LDEMFTVFVEIDRDKTGVVDLDEFYRFFELERGPFADRVFGIADEDASGEIEFREFVISIWNYCSMDVRSLIRFSFDLFDADLSGYLDVAEMFELLAEVYGESYESNLRQKRLIRELDDNGD 366
            +D  + +F++IDRD++  +DLDEFYRFF++ER PF+DR+F I DED SGEI+FREFV+ +WNY S D  +LI+F+             V E+ EL+ EVYG+++E++ R +R++  +D +GD
Sbjct:   39 IDRYYELFLKIDRDESHEIDLDEFYRFFDIERSPFSDRIFSIMDEDGSGEIDFREFVVCLWNYLSFDTSALIKFAXXXXXXXXXXXXXVTEVRELVMEVYGDAFEASYRVQRILDRIDADGD 160          
BLAST of mRNA_M-pyrifera_M_contig77072.18165.1 vs. uniprot
Match: A0A7S2SD95_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SD95_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.020e-24
Identity = 51/123 (41.46%), Postives = 76/123 (61.79%), Query Frame = 1
Query:   10 MFTVFVEIDRDKTGVVDLDEFYRFFELERGPFADRVFGIADEDASGEIEFREFVISIWNYCSMDVRSLIRFSFDLFDADLSGYLDVAEMFELLAEVYG----ESYESNLRQKRLIRELDDNGD 366
            +F  FV++D D TG V + +F+ +  + +  F++RVFGI D D SG ++F EF + +WNYC+ DVR + + +FD+FD D  G LD+ E   LL  VY     E  E     K+L++E+D NGD
Sbjct:   61 VFKTFVDMDLDVTGEVSVQQFHSYLGVPQTKFSERVFGILDLDGSGALDFHEFCVGLWNYCTYDVRLITKLAFDIFDVDRKGRLDICECDALLRMVYDVEDLEEIEGPPDGKQLLKEIDVNGD 183          
BLAST of mRNA_M-pyrifera_M_contig77072.18165.1 vs. uniprot
Match: A0A7S1UAP5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAP5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.460e-23
Identity = 48/117 (41.03%), Postives = 76/117 (64.96%), Query Frame = 1
Query:    7 EMFTVFVEIDRDKTGVVDLDEFYRFFELE-RGPFADRVFGIADEDASGEIEFREFVISIWNYCSMDVRSLIRFSFDLFDADLSGYLDVAEMFELLAEVYGESYESNLRQKRLIRELD 354
            ++F VF  ID   T  + L+EF +F  L     F +RVF I D+D +G I+FREFV+S+WNYCS+   SL  F+FDL+D D SG +D  E+ E+L ++YG  ++++   +R++  ++
Sbjct:   46 KLFAVFTSIDTTGTSELTLNEFLKFANLPLENSFVERVFAIMDDDENGTIDFREFVVSVWNYCSLSQASLSMFAFDLYDRDGSGEIDTCEVEEMLQDIYGAEWKAHQPARRVMNSVE 162          
BLAST of mRNA_M-pyrifera_M_contig77072.18165.1 vs. uniprot
Match: A0A7S2G1T6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G1T6_9STRA)

HSP 1 Score: 100 bits (250), Expect = 6.820e-23
Identity = 49/124 (39.52%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    7 EMFTVFVEIDRDKTGVVDLDEFYRFFELERGPFADRVFGIADEDASGEIEFREFVISIWNYCSMDVRSLIRFSFDLFDADLSGYLDVAEMFELLAEVYGESYESNLRQ----KRLIRELDDNGD 366
            ++F  FV+ID D +G + ++EF+ +  +    F++R+FGI D DASG + F EF + +WNYC+ DVR + + +FD+FD D  G LD+AE   LL  VY   +  N+      K ++  +D NGD
Sbjct:   45 KIFEAFVDIDSDNSGEMSVEEFHVYLGMTSTKFSERIFGILDADASGALNFSEFAVGVWNYCTYDVRLITKLAFDIFDIDQQGKLDLAECDALLRMVYDVPHLDNIEGPPSGKEIMELIDVNGD 168          
BLAST of mRNA_M-pyrifera_M_contig77072.18165.1 vs. uniprot
Match: A0A7S2CHR9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CHR9_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.170e-22
Identity = 49/124 (39.52%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    7 EMFTVFVEIDRDKTGVVDLDEFYRFFELERGPFADRVFGIADEDASGEIEFREFVISIWNYCSMDVRSLIRFSFDLFDADLSGYLDVAEMFELLAEVYGESYESNLRQ----KRLIRELDDNGD 366
            ++F  FV+ID D +G + ++EF+ +  +    F++R+FGI D DASG + F EF + +WNYC+ DVR + + +FD+FD D  G LD+AE   LL  VY   +  N+      K ++  +D NGD
Sbjct:   45 KIFEAFVDIDSDNSGEMSVEEFHVYLGMTSTKFSERIFGILDADASGALNFSEFAVGVWNYCTYDVRLITKLAFDIFDIDQQGKLDLAECDALLRMVYDVPHLDNIEGPPSGKEIMELIDVNGD 168          
BLAST of mRNA_M-pyrifera_M_contig77072.18165.1 vs. uniprot
Match: A0A4Q3A667_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q3A667_9BACT)

HSP 1 Score: 97.8 bits (242), Expect = 5.110e-22
Identity = 45/112 (40.18%), Postives = 68/112 (60.71%), Query Frame = 1
Query:    7 EMFTVFVEIDRDKTGVVDLDEFYRFFELERGPFADRVFGIADEDASGEIEFREFVISIWNYCSMDVRSLIRFSFDLFDADLSGYLDVAEMFELLAEVYGESYESNLRQKRLI 342
            +++ +F  +D D +G V L E   + E+    F DRVF I DED SG+I+FREFV+S+WNYC++   +L  F+FDL+D +  G L   E  +LL ++YG  Y  +    R +
Sbjct:   32 QLYRIFARVDVDHSGTVGLKELLNYLEMGEAVFKDRVFSIFDEDGSGQIDFREFVLSLWNYCTLSKATLDLFAFDLYDKNNDGELSAEEAEDLLRDLYGAHYAQHNPTARFV 143          
BLAST of mRNA_M-pyrifera_M_contig77072.18165.1 vs. uniprot
Match: A0A482RZW0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZW0_9ARCH)

HSP 1 Score: 93.6 bits (231), Expect = 6.040e-22
Identity = 47/107 (43.93%), Postives = 71/107 (66.36%), Query Frame = 1
Query:   19 VFVEIDRDKTGVVDLDEFYRFFELE-RGPFADRVFGIADEDASGEIEFREFVISIWNYCSMDVRSLIRFSFDLFDADLSGYLDVAEMFELLAEVYG-ESYESNLRQK 333
            +F  ID D +G + L E     ++E    F+ RVF I DED SG+++FREFV+SIWNYC++   +L  F+FDL+DAD +G+L   E+  +L ++YG E+  +NL+ K
Sbjct:   39 IFDSIDIDHSGSIGLKELLTHLDIESNNKFSKRVFSIFDEDGSGQVDFREFVLSIWNYCTLSQATLALFAFDLYDADRTGFLSPVEIEGILKDLYGSEAVSTNLQAK 145          
BLAST of mRNA_M-pyrifera_M_contig77072.18165.1 vs. uniprot
Match: A0A482T6P1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T6P1_9ARCH)

HSP 1 Score: 95.1 bits (235), Expect = 9.360e-22
Identity = 41/115 (35.65%), Postives = 75/115 (65.22%), Query Frame = 1
Query:    7 EMFTVFVEIDRDKTGVVDLDEFYRFFELERGPFADRVFGIADEDASGEIEFREFVISIWNYCSMDVRSLIRFSFDLFDADLSGYLDVAEMFELLAEVYGESYESNLRQKRLIREL 351
            +   ++  IDRD +G +DL E   + ++E   F+ R F + D + SG+I+FREFV+S+WNYC++   +L  ++FDL+D D SG L  +E+  +L ++YG+++++N R   ++  +
Sbjct:   32 KFLNMYQAIDRDNSGAIDLQELLNYLDIENTSFSHRAFSVFDINNSGKIDFREFVLSLWNYCTLGNATLDVYTFDLYDKDKSGILSESEVQAMLKDLYGKTFQTNPRATAVMNAM 146          
BLAST of mRNA_M-pyrifera_M_contig77072.18165.1 vs. uniprot
Match: A0A2R5GVS2_9STRA (Calcium-dependent protein kinase 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVS2_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.830e-21
Identity = 44/117 (37.61%), Postives = 76/117 (64.96%), Query Frame = 1
Query:    1 LDEMFTVFVEIDRDKTGVVDLDEFYRFFELERGPFADRVFGIADEDASGEIEFREFVISIWNYCSMDVRSLIRFSFDLFDADLSGYLDVAEMFELLAEVYGESYESNLRQKRLIREL 351
            +++++  F +ID+D +G + L E     ++ + PF  RVF I DED SG I+FREFV+S WNY ++   +LI F+FDL+D D SG +++ E+ ++  +VYG  +E +    ++I ++
Sbjct:   31 VEKLYRGFSKIDKDGSGELSLFELLDHLKVSKTPFTKRVFSIFDEDGSGSIDFREFVLSTWNYATLTKSTLIIFAFDLYDGDESGSMELEEIMDMCKDVYGADFEKSRLAAQIIDKI 147          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77072.18165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812KJA5_9DINO9.760e-4664.29Calmodulin n=4 Tax=Sar TaxID=2698737 RepID=A0A812K... [more]
A0A7S1G3P1_9STRA6.610e-3346.72Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S2SD95_9STRA1.020e-2441.46Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1UAP5_9STRA1.460e-2341.03Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2G1T6_9STRA6.820e-2339.52Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2CHR9_9STRA2.170e-2239.52Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4Q3A667_9BACT5.110e-2240.18Uncharacterized protein (Fragment) n=1 Tax=Verruco... [more]
A0A482RZW0_9ARCH6.040e-2243.93Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A482T6P1_9ARCH9.360e-2235.65Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A2R5GVS2_9STRA2.830e-2137.61Calcium-dependent protein kinase 1 n=1 Tax=Hondaea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77072contigM-pyrifera_M_contig77072:544..1014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue1.5e-16
Seed eggNOG ortholog2880.D7FMZ9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.EF-hand, calcium binding motif
EggNOG OGs2CXXS@1,2S4MR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size366
Cds size357
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77072.18165.1prot_M-pyrifera_M_contig77072.18165.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77072 553..1014 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.6103745-UTR-M-pyrifera_M_contig77072:543..5521622816671.6103745-UTR-M-pyrifera_M_contig77072:543..552Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77072 544..552 +
1692278110.5057495-UTR-M-pyrifera_M_contig77072:543..5521692278110.5057495-UTR-M-pyrifera_M_contig77072:543..552Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77072 544..552 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.622858-CDS-M-pyrifera_M_contig77072:552..7121622816671.622858-CDS-M-pyrifera_M_contig77072:552..712Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77072 553..712 +
1692278110.52143-CDS-M-pyrifera_M_contig77072:552..7121692278110.52143-CDS-M-pyrifera_M_contig77072:552..712Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77072 553..712 +
1622816671.6342263-CDS-M-pyrifera_M_contig77072:817..10141622816671.6342263-CDS-M-pyrifera_M_contig77072:817..1014Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77072 818..1014 +
1692278110.5368645-CDS-M-pyrifera_M_contig77072:817..10141692278110.5368645-CDS-M-pyrifera_M_contig77072:817..1014Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77072 818..1014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77072.18165.1

>prot_M-pyrifera_M_contig77072.18165.1 ID=prot_M-pyrifera_M_contig77072.18165.1|Name=mRNA_M-pyrifera_M_contig77072.18165.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
MFTVFVEIDRDKTGVVDLDEFYRFFELERGPFADRVFGIADEDASGEIEF
REFVISIWNYCSMDVRSLIRFSFDLFDADLSGYLDVAEMFELLAEVYGES
YESNLRQKRLIRELDDNGD
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mRNA from alignment at M-pyrifera_M_contig77072:544..1014+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77072.18165.1 ID=mRNA_M-pyrifera_M_contig77072.18165.1|Name=mRNA_M-pyrifera_M_contig77072.18165.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig77072:544..1014+ (Macrocystis pyrifera P11B4 male)
TTGGACGAAATGTTTACTGTGTTTGTGGAAATTGATCGTGACAAGACGGG AGTGGTTGATCTCGACGAGTTTTATAGGTTTTTCGAGTTGGAGCGCGGTC CGTTCGCTGACCGTGTGTTTGGAATCGCTGATGAGGATGCCTCTGGGGAA ATCGAGTTTAGAGAGTTTGGTATGTGGAGGTGGTTGGGGTTTGTGGGGGA AAGGGGGGGAAGTTGGGAAGAGGGGGTTTGTGGTGCGGTGGGAAGAAAAA TATGGCGTTGTCTTCTGTGTGCAGTGATTTCGATTTGGAACTATTGTAGC ATGGATGTGAGGTCGTTGATTCGCTTTTCGTTTGACTTGTTTGATGCTGA TCTCTCAGGGTACTTGGATGTTGCAGAAATGTTCGAGTTATTGGCTGAAG TGTATGGAGAGTCCTATGAGAGCAACTTGCGCCAGAAGCGTTTGATTCGT GAGCTGGATGACAATGGAGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77072:544..1014+

>mRNA_M-pyrifera_M_contig77072.18165.1 ID=mRNA_M-pyrifera_M_contig77072.18165.1|Name=mRNA_M-pyrifera_M_contig77072.18165.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig77072:544..1014+ (Macrocystis pyrifera P11B4 male)
ATGTTTACTGTGTTTGTGGAAATTGATCGTGACAAGACGGGAGTGGTTGA
TCTCGACGAGTTTTATAGGTTTTTCGAGTTGGAGCGCGGTCCGTTCGCTG
ACCGTGTGTTTGGAATCGCTGATGAGGATGCCTCTGGGGAAATCGAGTTT
AGAGAGTTTGATGTTTACTGTGTTTGTGGAAATTGATCGTGACAAGACGG
GAGTGGTTGATCTCGACGAGTTTTATAGGTTTTTCGAGTTGGAGCGCGGT
CCGTTCGCTGACCGTGTGTTTGGAATCGCTGATGAGGATGCCTCTGGGGA
AATCGAGTTTAGAGAGTTTGTGATTTCGATTTGGAACTATTGTAGCATGG
ATGTGAGGTCGTTGATTCGCTTTTCGTTTGACTTGTTTGATGCTGATCTC
TCAGGGTACTTGGATGTTGCAGAAATGTTCGAGTTATTGGCTGAAGTGTA
TGGAGAGTCCTATGAGAGCAACTTGCGCCAGAAGCGTTTGATTCGTGAGC
TGGATGACAATGGAGATTGATTTCGATTTGGAACTATTGTAGCATGGATG
TGAGGTCGTTGATTCGCTTTTCGTTTGACTTGTTTGATGCTGATCTCTCA
GGGTACTTGGATGTTGCAGAAATGTTCGAGTTATTGGCTGAAGTGTATGG
AGAGTCCTATGAGAGCAACTTGCGCCAGAAGCGTTTGATTCGTGAGCTGG
ATGACAATGGAGAT
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