mRNA_M-pyrifera_M_contig77066.18162.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77066.18162.1
Unique NamemRNA_M-pyrifera_M_contig77066.18162.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig77066.18162.1 vs. uniprot
Match: A0A3D4PPC5_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3D4PPC5_9PLAN)

HSP 1 Score: 154 bits (390), Expect = 1.150e-46
Identity = 69/97 (71.13%), Postives = 83/97 (85.57%), Query Frame = 1
Query:   22 GFNSFRALKRQLGSAGEGKQWHHIVEQSKLGQFGAKAIHNTDNVIAIPRPIHEKISGFYSSIQDFTKGQTVRKWLDGQSFSAQHNFGIDTLKKFGAL 312
            G+ SF ALKR LG AGEG+ WHHIVEQSK+GQFGA+AIH+ DNVI+IP PIH +I+GFY+SIQDFT GQTVR+WL+GQSF  Q  FG+D L++FGAL
Sbjct:   26 GYGSFSALKRALGPAGEGRHWHHIVEQSKVGQFGAEAIHHVDNVISIPAPIHHRITGFYNSIQDFTNGQTVRQWLNGQSFEFQREFGMDILRRFGAL 122          
BLAST of mRNA_M-pyrifera_M_contig77066.18162.1 vs. uniprot
Match: UPI001FAEA913 (RHS repeat-associated core domain-containing protein n=1 Tax=Geothrix sp. SG178 TaxID=2922719 RepID=UPI001FAEA913)

HSP 1 Score: 129 bits (323), Expect = 7.490e-35
Identity = 60/96 (62.50%), Postives = 72/96 (75.00%), Query Frame = 1
Query:   19 EGFNSFRALKRQLGSAGEGKQWHHIVEQSKLGQFGAKAIHNTDNVIAIPRPIHEKISGFYSSIQDFTKGQTVRKWLDGQSFSAQHNFGIDTLKKFG 306
            +GFNSF  LK  +GSAG+G  WHHIVEQS+ G+FGA+AI NT NVIA+   I+ KISGFYSS Q FT G TVR+WL  QSF  Q  FG++ LK+FG
Sbjct:  157 QGFNSFGELKNAIGSAGQGNHWHHIVEQSQTGKFGAQAIQNTKNVIAVDAGIYSKISGFYSSKQAFTGGLTVRQWLSSQSFEQQRKFGLEVLKRFG 252          
BLAST of mRNA_M-pyrifera_M_contig77066.18162.1 vs. uniprot
Match: A0A2K9E9N4_9FIRM (INTEIN_C_TER domain-containing protein n=1 Tax=Acetivibrio saccincola TaxID=1677857 RepID=A0A2K9E9N4_9FIRM)

HSP 1 Score: 121 bits (304), Expect = 8.740e-32
Identity = 58/100 (58.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:   19 EGFNSFRALKRQLGSAGEGKQWHHIVEQSKLGQ--FGAKAIHNTDNVIAIPRPIHEKISGFYSSIQDFTKGQTVRKWLDGQSFSAQHNFGIDTLKKFGAL 312
            +GF +F   K+ LGS GEG  WHHIVEQS++ +  F    IHNT+N+IA+ +  H KISG+YSS Q FT G+TVR WL GQSF AQ  FGID LKKFG +
Sbjct:  178 QGFKTFNEAKKALGSPGEGNAWHHIVEQSQIKKSGFDPTQIHNTNNLIAVDKATHAKISGYYSSKQAFTGGKTVRDWLAGQSFEAQFEFGIDVLKKFGVI 277          
BLAST of mRNA_M-pyrifera_M_contig77066.18162.1 vs. uniprot
Match: A0A0F2JFG6_9FIRM (Guanosine polyphosphate pyrophosphohydrolase/synthetase n=2 Tax=Desulfosporosinus sp. I2 TaxID=1617025 RepID=A0A0F2JFG6_9FIRM)

HSP 1 Score: 119 bits (298), Expect = 1.540e-31
Identity = 57/101 (56.44%), Postives = 75/101 (74.26%), Query Frame = 1
Query:   19 EGFNSFRALKRQLGSAGEGKQWHHIVEQSKLGQ--FGAKAIHNTDNVIAIPRPIHEKISGFYSSIQ-DFTKGQTVRKWLDGQSFSAQHNFGIDTLKKFGAL 312
            +GFNSF ALK++LGSAGEGK WHHIVEQ+++ +  F  + IHNT+NVIA+    H KISG+Y+SI+ D +    VR WL GQS+  Q+ FGID LK+FG +
Sbjct:  114 KGFNSFNALKKELGSAGEGKAWHHIVEQNQIRKSGFSPQQIHNTNNVIAVDSATHAKISGYYNSIRPDISGNMRVRDWLAGQSYEYQYEFGIDVLKQFGVI 214          
BLAST of mRNA_M-pyrifera_M_contig77066.18162.1 vs. uniprot
Match: UPI001F07F968 (hypothetical protein n=1 Tax=Pyxidicoccus trucidator TaxID=2709662 RepID=UPI001F07F968)

HSP 1 Score: 122 bits (307), Expect = 2.200e-31
Identity = 59/97 (60.82%), Postives = 72/97 (74.23%), Query Frame = 1
Query:   25 FNSFRALKRQLGSAGEGKQWHHIVEQSK--LGQFGAKAIHNTDNVIAIPRPIHEKISGFYSSIQDFTKGQTVRKWLDGQSFSAQHNFGIDTLKKFGA 309
            + S   LK+ LG AG+GKQWHHIVEQ+K  +G+FG   IHNT NVIA+   +H KISG+YSSIQ FT G+TVR WL  QSF AQ +FG+ TL+ FGA
Sbjct:  282 WGSHSGLKKALGPAGQGKQWHHIVEQTKGNVGRFGKHVIHNTHNVIALNEGLHVKISGYYSSIQRFTAGKTVRHWLSTQSFDAQRDFGLKTLRDFGA 378          
BLAST of mRNA_M-pyrifera_M_contig77066.18162.1 vs. uniprot
Match: A0A2G3DS31_9FIRM (Uncharacterized protein n=1 Tax=Pseudobutyrivibrio ruminis TaxID=46206 RepID=A0A2G3DS31_9FIRM)

HSP 1 Score: 115 bits (289), Expect = 6.570e-31
Identity = 56/103 (54.37%), Postives = 74/103 (71.84%), Query Frame = 1
Query:   19 EGFNSFRALKRQLGSAGEGKQWHHIVEQSKLGQ--FGAKAIHNTDNVIAIPR---PIHEKISGFYSSIQDFTKGQTVRKWLDGQSFSAQHNFGIDTLKKFGAL 312
            +GFN+F  LK +LGS GEG  WHHIVEQS++ +  F +  ++N +NVI+IP     +H KISG+YSS Q FT GQTVR+WL GQSF  Q  FGI+ L++FG +
Sbjct:   39 KGFNNFNELKAELGSPGEGNAWHHIVEQSQISKSGFDSTQVNNINNVISIPHGKGSVHAKISGYYSSKQFFTGGQTVRQWLSGQSFQEQFEFGINLLREFGTV 141          
BLAST of mRNA_M-pyrifera_M_contig77066.18162.1 vs. uniprot
Match: A0A4V3WG82_9BACL (Uncharacterized protein n=1 Tax=Cohnella fermenti TaxID=2565925 RepID=A0A4V3WG82_9BACL)

HSP 1 Score: 115 bits (289), Expect = 1.720e-30
Identity = 59/103 (57.28%), Postives = 73/103 (70.87%), Query Frame = 1
Query:   22 GFNSFRALKRQLGSAGEGKQWHHIVEQSKLGQFGAKA--IHNTDNVIAIPR----PIHEKISGFYSSIQDFTKGQTVRKWLDGQSFSAQHNFGIDTLKKFGAL 312
            GF SF  LK+ LGSAGE K WHHIVEQS++ + G KA  I N +NVI+IP      +H +ISG+YSSIQ FT G TVR WL GQSF  Q +FG++ LK+FG +
Sbjct:   73 GFKSFDDLKKVLGSAGENKAWHHIVEQSQVQRSGFKAEDIQNINNVISIPSGYSGSVHSQISGYYSSIQPFTNGLTVRNWLAGQSFEKQFDFGLNVLKRFGTV 175          
BLAST of mRNA_M-pyrifera_M_contig77066.18162.1 vs. uniprot
Match: UPI001CBC2641 (hypothetical protein n=3 Tax=unclassified Myxococcus TaxID=2648731 RepID=UPI001CBC2641)

HSP 1 Score: 121 bits (303), Expect = 3.370e-30
Identity = 54/103 (52.43%), Postives = 77/103 (74.76%), Query Frame = 1
Query:   10 GAREGFNSFRALKRQLGSAGEGKQWHHIVEQS--KLGQFGAKAIHNTDNVIAIPRPIHEKISGFYSSIQDFTKGQTVRKWLDGQSFSAQHNFGIDTLKKFGAL 312
            G  + ++SF++ KR +G AG GK+WHHIVEQ+   +G+FG KAIHNT+NV+A+ + +H K+S FYSS Q  + G+TVR+WL  QS+ AQ  FG++ L+ FGAL
Sbjct:  390 GGMKSYSSFKSFKRAMGPAGPGKEWHHIVEQTDGNVGRFGPKAIHNTENVVALDKELHMKVSAFYSSNQRISGGKTVREWLRAQSYEAQREFGLNILRDFGAL 492          
BLAST of mRNA_M-pyrifera_M_contig77066.18162.1 vs. uniprot
Match: UPI00048A22DD (hypothetical protein n=1 Tax=Desulfitibacter alkalitolerans TaxID=264641 RepID=UPI00048A22DD)

HSP 1 Score: 119 bits (299), Expect = 4.740e-30
Identity = 57/107 (53.27%), Postives = 79/107 (73.83%), Query Frame = 1
Query:    1 SAKGAREGFNSFRALKRQLGSAGEGKQWHHIVEQSKLGQ--FGAKAIHNTDNVIAIPRPIHEKISGFYSSIQ-DFTKGQTVRKWLDGQSFSAQHNFGIDTLKKFGAL 312
            +A+GA + F++F ALK++LGSAGEGK WHH+VEQS++ +  F  + IHNT+NVIA+    H KISG+Y+SI+ D +    VR WL GQSF  Q+ FG+D LK+FG +
Sbjct:  299 AAEGAGQAFDNFNALKKELGSAGEGKAWHHVVEQSQIQKSGFSPQQIHNTNNVIAVDSATHAKISGYYNSIRPDISGNMRVRDWLAGQSFEMQYQFGMDVLKQFGVI 405          
BLAST of mRNA_M-pyrifera_M_contig77066.18162.1 vs. uniprot
Match: A0A1J0LJK1_9FLAO (DUF6443 domain-containing protein n=1 Tax=Flavobacteriaceae bacterium UJ101 TaxID=1150389 RepID=A0A1J0LJK1_9FLAO)

HSP 1 Score: 121 bits (303), Expect = 9.170e-30
Identity = 59/101 (58.42%), Postives = 74/101 (73.27%), Query Frame = 1
Query:   19 EGFNSFRALKRQLGSAGEGKQWHHIVEQS--KLGQFGAKAIHNTDNVIAIPR---PIHEKISGFYSSIQDFTKGQTVRKWLDGQSFSAQHNFGIDTLKKFG 306
            +GF SF A KR +G+AG+GK WHHIVEQ+   L QFG++AIHNT N+I +P     IH KISG+YSS Q FT GQTVR+WL  +S+  Q+ FGI  LK+FG
Sbjct: 1127 KGFRSFSAFKRAMGTAGKGKAWHHIVEQNPANLAQFGSEAIHNTGNLIKLPHGAGTIHAKISGYYSSKQRFTGGQTVRQWLSNKSYKEQYEFGIQKLKEFG 1227          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77066.18162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D4PPC5_9PLAN1.150e-4671.13Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
UPI001FAEA9137.490e-3562.50RHS repeat-associated core domain-containing prote... [more]
A0A2K9E9N4_9FIRM8.740e-3258.00INTEIN_C_TER domain-containing protein n=1 Tax=Ace... [more]
A0A0F2JFG6_9FIRM1.540e-3156.44Guanosine polyphosphate pyrophosphohydrolase/synth... [more]
UPI001F07F9682.200e-3160.82hypothetical protein n=1 Tax=Pyxidicoccus trucidat... [more]
A0A2G3DS31_9FIRM6.570e-3154.37Uncharacterized protein n=1 Tax=Pseudobutyrivibrio... [more]
A0A4V3WG82_9BACL1.720e-3057.28Uncharacterized protein n=1 Tax=Cohnella fermenti ... [more]
UPI001CBC26413.370e-3052.43hypothetical protein n=3 Tax=unclassified Myxococc... [more]
UPI00048A22DD4.740e-3053.27hypothetical protein n=1 Tax=Desulfitibacter alkal... [more]
A0A1J0LJK1_9FLAO9.170e-3058.42DUF6443 domain-containing protein n=1 Tax=Flavobac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77066contigM-pyrifera_M_contig77066:507..821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score110.5
Seed ortholog evalue4.7e-22
Seed eggNOG ortholog1298920.KI911353_gene3885
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RHS Repeat
EggNOG OGs1TR8F@1239,2211R@1506553,248C6@186801,COG3209@1,COG3209@2
COG Functional cat.M
Best tax levelLachnoclostridium
Best eggNOG OGNA|NA|NA
Exons1
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.5171063-CDS-M-pyrifera_M_contig77066:506..8211622816671.5171063-CDS-M-pyrifera_M_contig77066:506..821Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77066 507..821 +
1692278110.4664433-CDS-M-pyrifera_M_contig77066:506..8211692278110.4664433-CDS-M-pyrifera_M_contig77066:506..821Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77066 507..821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77066.18162.1prot_M-pyrifera_M_contig77066.18162.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77066 507..821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77066.18162.1

>prot_M-pyrifera_M_contig77066.18162.1 ID=prot_M-pyrifera_M_contig77066.18162.1|Name=mRNA_M-pyrifera_M_contig77066.18162.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
SAKGAREGFNSFRALKRQLGSAGEGKQWHHIVEQSKLGQFGAKAIHNTDN
VIAIPRPIHEKISGFYSSIQDFTKGQTVRKWLDGQSFSAQHNFGIDTLKK
FGAL*
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mRNA from alignment at M-pyrifera_M_contig77066:507..821+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77066.18162.1 ID=mRNA_M-pyrifera_M_contig77066.18162.1|Name=mRNA_M-pyrifera_M_contig77066.18162.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig77066:507..821+ (Macrocystis pyrifera P11B4 male)
TCGGCGAAGGGAGCAAGGGAGGGCTTCAACTCGTTCCGTGCATTAAAACG GCAACTAGGATCAGCCGGTGAGGGTAAGCAGTGGCACCACATTGTAGAAC AATCAAAGCTCGGGCAGTTCGGAGCTAAAGCGATCCACAACACCGACAAC GTTATAGCTATTCCCAGGCCCATCCACGAGAAAATCAGCGGCTTCTATAG TTCGATTCAAGACTTCACGAAAGGCCAGACAGTCAGGAAATGGCTAGACG GTCAGTCTTTTTCGGCACAACACAATTTCGGAATAGACACACTTAAGAAG TTTGGTGCGTTATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77066:507..821+

>mRNA_M-pyrifera_M_contig77066.18162.1 ID=mRNA_M-pyrifera_M_contig77066.18162.1|Name=mRNA_M-pyrifera_M_contig77066.18162.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig77066:507..821+ (Macrocystis pyrifera P11B4 male)
TCGGCGAAGGGAGCAAGGGAGGGCTTCAACTCGTTCCGTGCATTAAAACG
GCAACTAGGATCAGCCGGTGAGGGTAAGCAGTGGCACCACATTGTAGAAC
AATCAAAGCTCGGGCAGTTCGGAGCTAAAGCGATCCACAACACCGACAAC
GTTATAGCTATTCCCAGGCCCATCCACGAGAAAATCAGCGGCTTCTATAG
TTCGATTCAAGACTTCACGAAAGGCCAGACAGTCAGGAAATGGCTAGACG
GTCAGTCTTTTTCGGCACAACACAATTTCGGAATAGACACACTTAAGAAG
TTTGGTGCGTTATGATCGGCGAAGGGAGCAAGGGAGGGCTTCAACTCGTT
CCGTGCATTAAAACGGCAACTAGGATCAGCCGGTGAGGGTAAGCAGTGGC
ACCACATTGTAGAACAATCAAAGCTCGGGCAGTTCGGAGCTAAAGCGATC
CACAACACCGACAACGTTATAGCTATTCCCAGGCCCATCCACGAGAAAAT
CAGCGGCTTCTATAGTTCGATTCAAGACTTCACGAAAGGCCAGACAGTCA
GGAAATGGCTAGACGGTCAGTCTTTTTCGGCACAACACAATTTCGGAATA
GACACACTTAAGAAGTTTGGTGCGTTATGA
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