mRNA_M-pyrifera_M_contig77065.18161.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77065.18161.1
Unique NamemRNA_M-pyrifera_M_contig77065.18161.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77065.18161.1 vs. uniprot
Match: A0A1S8W6C9_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W6C9_9FUNG)

HSP 1 Score: 53.9 bits (128), Expect = 3.940e-5
Identity = 30/61 (49.18%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:  439 PFQPTYTPTQYDNMGV------GDNNIEQAMRHSKYAVSALQFEDVQAAVSNLQKALAFLQ 603
            P+ P  T   YD+             + QA RHSK+A+SALQFEDV  A+ NLQKALA LQ
Sbjct:  271 PYPPAATTPDYDSNATILFDEQASKVMAQAQRHSKFAISALQFEDVPTAIDNLQKALALLQ 331
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77065.18161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1S8W6C9_9FUNG3.940e-549.18Uncharacterized protein n=1 Tax=Batrachochytrium s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77065contigM-pyrifera_M_contig77065:377..985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size609
Cds size609
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.4821334-CDS-M-pyrifera_M_contig77065:376..9851622816671.4821334-CDS-M-pyrifera_M_contig77065:376..985Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77065 377..985 -
1692278110.4553516-CDS-M-pyrifera_M_contig77065:376..9851692278110.4553516-CDS-M-pyrifera_M_contig77065:376..985Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77065 377..985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77065.18161.1prot_M-pyrifera_M_contig77065.18161.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77065 377..985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77065.18161.1

>prot_M-pyrifera_M_contig77065.18161.1 ID=prot_M-pyrifera_M_contig77065.18161.1|Name=mRNA_M-pyrifera_M_contig77065.18161.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=203bp
KAADINSALKEGRTPAAGPAAVPAAALQEESSALPSVPALPSVSAAAPDA
SAAAAQAPPPQQPFAAVPQTPQAPHTPQMPQTPQMPQTPQMPQMPQPPAQ
QQQMQQMQQQQMPQQQMQQQQMQQQQMPQQQQRRQIPPPPGGGGGQPFQP
TYTPTQYDNMGVGDNNIEQAMRHSKYAVSALQFEDVQAAVSNLQKALAFL
QQ*
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mRNA from alignment at M-pyrifera_M_contig77065:377..985-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77065.18161.1 ID=mRNA_M-pyrifera_M_contig77065.18161.1|Name=mRNA_M-pyrifera_M_contig77065.18161.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=609bp|location=Sequence derived from alignment at M-pyrifera_M_contig77065:377..985- (Macrocystis pyrifera P11B4 male)
AAGGCCGCAGACATCAACTCTGCCCTCAAGGAGGGCCGCACGCCGGCGGC
CGGCCCCGCGGCCGTGCCCGCCGCCGCTCTGCAGGAGGAGAGCTCCGCCC
TCCCCTCCGTCCCCGCCCTCCCCTCCGTCTCCGCCGCCGCGCCCGACGCC
TCCGCCGCAGCCGCACAGGCGCCGCCCCCCCAGCAGCCGTTCGCAGCCGT
GCCCCAGACGCCACAGGCGCCGCACACGCCGCAGATGCCACAGACGCCGC
AGATGCCACAGACGCCGCAGATGCCGCAGATGCCGCAGCCTCCTGCACAG
CAGCAACAGATGCAGCAGATGCAGCAGCAGCAGATGCCACAGCAGCAGAT
GCAGCAGCAGCAGATGCAGCAGCAGCAGATGCCACAGCAGCAGCAGCGGC
GGCAGATTCCTCCGCCGCCGGGGGGGGGCGGGGGACAGCCGTTCCAGCCG
ACCTACACGCCGACGCAGTACGACAACATGGGCGTGGGCGACAACAACAT
CGAGCAGGCCATGCGGCACTCGAAGTACGCCGTCAGCGCGCTGCAGTTCG
AGGACGTGCAGGCGGCCGTCTCCAACCTGCAGAAGGCGCTGGCCTTCCTG
CAGCAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77065:377..985-

>mRNA_M-pyrifera_M_contig77065.18161.1 ID=mRNA_M-pyrifera_M_contig77065.18161.1|Name=mRNA_M-pyrifera_M_contig77065.18161.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1218bp|location=Sequence derived from alignment at M-pyrifera_M_contig77065:377..985- (Macrocystis pyrifera P11B4 male)
AAGGCCGCAGACATCAACTCTGCCCTCAAGGAGGGCCGCACGCCGGCGGC
CGGCCCCGCGGCCGTGCCCGCCGCCGCTCTGCAGGAGGAGAGCTCCGCCC
TCCCCTCCGTCCCCGCCCTCCCCTCCGTCTCCGCCGCCGCGCCCGACGCC
TCCGCCGCAGCCGCACAGGCGCCGCCCCCCCAGCAGCCGTTCGCAGCCGT
GCCCCAGACGCCACAGGCGCCGCACACGCCGCAGATGCCACAGACGCCGC
AGATGCCACAGACGCCGCAGATGCCGCAGATGCCGCAGCCTCCTGCACAG
CAGCAACAGATGCAGCAGATGCAGCAGCAGCAGATGCCACAGCAGCAGAT
GCAGCAGCAGCAGATGCAGCAGCAGCAGATGCCACAGCAGCAGCAGCGGC
GGCAGATTCCTCCGCCGCCGGGGGGGGGCGGGGGACAGCCGTTCCAGCCG
ACCTACACGCCGACGCAGTACGACAACATGGGCGTGGGCGACAACAACAT
CGAGCAGGCCATGCGGCACTCGAAGTACGCCGTCAGCGCGCTGCAGTTCG
AGGACGTGCAGGCGGCCGTCTCCAACCTGCAGAAGGCGCTGGCCTTCCTG
CAGCAGTAGAAGGCCGCAGACATCAACTCTGCCCTCAAGGAGGGCCGCAC
GCCGGCGGCCGGCCCCGCGGCCGTGCCCGCCGCCGCTCTGCAGGAGGAGA
GCTCCGCCCTCCCCTCCGTCCCCGCCCTCCCCTCCGTCTCCGCCGCCGCG
CCCGACGCCTCCGCCGCAGCCGCACAGGCGCCGCCCCCCCAGCAGCCGTT
CGCAGCCGTGCCCCAGACGCCACAGGCGCCGCACACGCCGCAGATGCCAC
AGACGCCGCAGATGCCACAGACGCCGCAGATGCCGCAGATGCCGCAGCCT
CCTGCACAGCAGCAACAGATGCAGCAGATGCAGCAGCAGCAGATGCCACA
GCAGCAGATGCAGCAGCAGCAGATGCAGCAGCAGCAGATGCCACAGCAGC
AGCAGCGGCGGCAGATTCCTCCGCCGCCGGGGGGGGGCGGGGGACAGCCG
TTCCAGCCGACCTACACGCCGACGCAGTACGACAACATGGGCGTGGGCGA
CAACAACATCGAGCAGGCCATGCGGCACTCGAAGTACGCCGTCAGCGCGC
TGCAGTTCGAGGACGTGCAGGCGGCCGTCTCCAACCTGCAGAAGGCGCTG
GCCTTCCTGCAGCAGTAG
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