mRNA_M-pyrifera_M_contig7705.18158.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7705.18158.1
Unique NamemRNA_M-pyrifera_M_contig7705.18158.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7705.18158.1 vs. uniprot
Match: D8LQK0_ECTSI (Deoxyribodipyrimidine photo-lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQK0_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 2.560e-12
Identity = 40/58 (68.97%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 MNYAGCKRKFDVQEFVSKYPGAADAATAAGGTPAPPKRKPSDKKNGSNLGKRSKASKG 174
            MNYAGCKRKFDVQEFVSKY GA +AA AAGGT AP KRKPS  K  S+   + KA  G
Sbjct:  446 MNYAGCKRKFDVQEFVSKYAGAGEAAVAAGGTVAPAKRKPSAAKGRSSXXXKGKAVSG 503
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7705.18158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQK0_ECTSI2.560e-1268.97Deoxyribodipyrimidine photo-lyase n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7705contigM-pyrifera_M_contig7705:509..2346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue4.7e-11
Seed eggNOG ortholog2880.D8LQK0
Preferred namephr
KEGG koko:K01669
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0000719,GO:0003674,GO:0003824,GO:0003904,GO:0003913,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006290,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009987,GO:0016829,GO:0016830,GO:0033554,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0050896,GO:0051716,GO:0071704,GO:0071949,GO:0090304,GO:0097159,GO:0140097,GO:1901265,GO:1901360,GO:1901363
EggNOG free text desc.DNA photolyase activity
EggNOG OGsCOG0415@1,KOG0133@2759
Ec32 ortholog descriptionDNA photolyase, class 2
Ec32 orthologEc-10_005990.1
EC4.1.99.3
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons2
Model size408
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7705.18158.1prot_M-pyrifera_M_contig7705.18158.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7705 740..2346 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.2951996-UTR-M-pyrifera_M_contig7705:508..7391622816671.2951996-UTR-M-pyrifera_M_contig7705:508..739Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7705 509..739 -
1692278110.353962-UTR-M-pyrifera_M_contig7705:508..7391692278110.353962-UTR-M-pyrifera_M_contig7705:508..739Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7705 509..739 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.3084328-CDS-M-pyrifera_M_contig7705:739..8771622816671.3084328-CDS-M-pyrifera_M_contig7705:739..877Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7705 740..877 -
1692278110.367094-CDS-M-pyrifera_M_contig7705:739..8771692278110.367094-CDS-M-pyrifera_M_contig7705:739..877Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7705 740..877 -
1622816671.3230758-CDS-M-pyrifera_M_contig7705:2307..23461622816671.3230758-CDS-M-pyrifera_M_contig7705:2307..2346Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7705 2308..2346 -
1692278110.376221-CDS-M-pyrifera_M_contig7705:2307..23461692278110.376221-CDS-M-pyrifera_M_contig7705:2307..2346Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7705 2308..2346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7705.18158.1

>prot_M-pyrifera_M_contig7705.18158.1 ID=prot_M-pyrifera_M_contig7705.18158.1|Name=mRNA_M-pyrifera_M_contig7705.18158.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
MNYAGCKRKFDVQEFVSKYPGAADAATAAGGTPAPPKRKPSDKKNGSNLG
KRSKASKG*
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mRNA from alignment at M-pyrifera_M_contig7705:509..2346-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7705.18158.1 ID=mRNA_M-pyrifera_M_contig7705.18158.1|Name=mRNA_M-pyrifera_M_contig7705.18158.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1838bp|location=Sequence derived from alignment at M-pyrifera_M_contig7705:509..2346- (Macrocystis pyrifera P11B4 male)
ATGAACTACGCCGGCTGCAAGCGAAAGTTCGACGTGCAGGTATATTGTAC
CCCAGGTTGCACATACATACATACTTCGCTCATTGTTTGCTGGTACTCGC
GCTCCATGCGTGCGTGCATAGTACGCGCCTATCGCGAACGGTGTTAGTCT
CCGCGAGGCTCTAAAAACTCGTCCCATGTTTGATTTCTTGACGATGAAAT
TACCCACACATCATCACGCTGACCTTGCGCCCGCCTGCGCTGTCGGGAGG
CGTAGATCGCCCTTATTTGGTCGTTTAGGGCTCGAATACGTACGCGCTTC
TGTCCGTGCTCTGCGCGGCCGCAACTACGTACCTCAAATACGTGCCGCTG
TCTAGCTGCCGTCGCGAAGTCCGCCCGATACGGCACTATGTACAGTTTTT
GTACGTGCACCAAGCTGTTTCTCAGCGTTGATGCCAAACAATACTGCTGT
CATACCGGTATTTAATCGCGTATTGCGCTACGCATGGTAGCATTCGGATA
CCTCCCAAAAACTCGCAGACGCCTTCATATTCCCGCCATCACCGCCATGG
TGCTGTCATAATGGCCATATTGCCACGGCGAGAACACATCAGTATTGCCG
CAATCACCGTCATATTGCCGCGATTGCCGACATAGTACCACGAATCCCGC
CACATTTTCGCGCTTGGCGCCTTACGTACAACCATAGCCACCGTATTGTC
GCCAGAACCGTCATATCCTCGCCATAACCGTCGTATTGTCCGAAGCATGT
GGGAATCGCGTGGAGTTTGCGTACATTGTCCCGCAGCCTGTGTTGGTAGC
GAAGCGTTGATTTCCCACGACCGCACGCAGATATTCTGTCGCATGATGGA
GGTACGTACACGTTTTGGACGCGCTGACAGAGATAGATGTTGTGGACTGT
GACATGCCAAGGACAGGAGGTATTCTACGGAATGAAGGTGGGACGTGTAC
GTGTCTGTAGTCCTCAAGTGCGATGAGTGCCTAGTCGCGAACAAAGACGA
GAAGAAAAAGCGTGTACGCCTTTCCGCCCGCCGAAGTTGGGCGTAGATCG
ACCGAAGACCAGCGTGTATGTACAGTACTGTGGTAGAAACAAGCCGTAGA
ATAGGCGTTGTTTCGCACAAAACTAAACATCGTGTCCTACGCAGCAGGAA
TAACCCGAGCTGTGGGCGGTGTCTAGCCTCAGAAAATTCGGCGTTTAGTA
GGAATGAGGCGTTTTATTTCAACCACAGCTCCTTTGCGAGCATCGTCGGG
GCCAGCACCGTGAACTACTACAGTTTTTCGGGGAACATAGTCATACATAG
TATTACATAGAAATCTTAACCCACGACGGACCTAAAAACCCATGTGTCCC
CGCTATATTTGGTTCCCATTATTATACTCCTACCGTATGTATTACTATGT
TCCCCCGAAATACTGCTATATACTCAGCTATGATACGCCCATCTTCGACC
GTTACTGTCCCGTCGTCAGGAATTCGTGTCCAAATATCCGGGGGCAGCGG
ACGCCGCCACGGCTGCGGGCGGTACACCGGCGCCACCTAAGCGAAAGCCG
TCCGACAAGAAGAATGGGAGCAATCTCGGAAAGAGGTCAAAGGCATCCAA
GGGCTAGCTAGGCCTACGTAGCAAGTGTCGGGGGCCCATGGGGGGAGAGC
AGCCGGACTGAAAAAGCATGGCGAACCCAAGCGAGCCGAAAACATAGCAA
ACCCGAGCAAACCACCCGCCCGCAGGAGGTTCTTTCTCCGCTGAGCTCTT
TTTTTATATACGAATGGGTGCATTGCGGGCCTGACTCGGTTGTGCGCGTA
CTGACGGATCACCAAGATAGTCGGCAGCTTTGAGGGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7705:509..2346-

>mRNA_M-pyrifera_M_contig7705.18158.1 ID=mRNA_M-pyrifera_M_contig7705.18158.1|Name=mRNA_M-pyrifera_M_contig7705.18158.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig7705:509..2346- (Macrocystis pyrifera P11B4 male)
ATGAACTACGCCGGCTGCAAGCGAAAGTTCGACGTGCAGATGAACTACGC
CGGCTGCAAGCGAAAGTTCGACGTGCAGGAATTCGTGTCCAAATATCCGG
GGGCAGCGGACGCCGCCACGGCTGCGGGCGGTACACCGGCGCCACCTAAG
CGAAAGCCGTCCGACAAGAAGAATGGGAGCAATCTCGGAAAGAGGTCAAA
GGCATCCAAGGGCTAGGAATTCGTGTCCAAATATCCGGGGGCAGCGGACG
CCGCCACGGCTGCGGGCGGTACACCGGCGCCACCTAAGCGAAAGCCGTCC
GACAAGAAGAATGGGAGCAATCTCGGAAAGAGGTCAAAGGCATCCAAGGG
CTAG
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