mRNA_M-pyrifera_M_contig77009.18152.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77009.18152.1
Unique NamemRNA_M-pyrifera_M_contig77009.18152.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77009.18152.1 vs. uniprot
Match: A0A6H5KR06_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR06_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 5.910e-22
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 PHLEQTLSTSPRTIGFVLVLPNVLYTMTAMKAEGVVDRHGVRKSLLWGLCVMAIR 165
            PHL QTLSTSPR+IGF LVLPNVLYT+TAMKAE +VDR G R++LL GLC+M++R
Sbjct:   55 PHLAQTLSTSPRSIGFALVLPNVLYTLTAMKAEDIVDRQGARRTLLAGLCIMSMR 109
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BLAST of mRNA_M-pyrifera_M_contig77009.18152.1 vs. uniprot
Match: D7G1X7_ECTSI (Major facilitator superfamily permease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X7_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.940e-19
Identity = 41/54 (75.93%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 PHLEQTLSTSPRTIGFVLVLPNVLYTMTAMKAEGVVDRHGVRKSLLWGLCVMAI 162
            PHL QTLSTSPR+IGFVLVLPNVLYT+TAMKAE +VDR G R++LL GLC+M++
Sbjct:  166 PHLAQTLSTSPRSIGFVLVLPNVLYTLTAMKAEDIVDRQGARRTLLAGLCIMSM 219
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77009.18152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KR06_9PHAE5.910e-2274.55MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G1X7_ECTSI1.940e-1975.93Major facilitator superfamily permease n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77009contigM-pyrifera_M_contig77009:62..229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816670.996221-CDS-M-pyrifera_M_contig77009:61..2291622816670.996221-CDS-M-pyrifera_M_contig77009:61..229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77009 62..229 +
1692278110.1721735-CDS-M-pyrifera_M_contig77009:61..2291692278110.1721735-CDS-M-pyrifera_M_contig77009:61..229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77009 62..229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77009.18152.1prot_M-pyrifera_M_contig77009.18152.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77009 62..229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77009.18152.1

>prot_M-pyrifera_M_contig77009.18152.1 ID=prot_M-pyrifera_M_contig77009.18152.1|Name=mRNA_M-pyrifera_M_contig77009.18152.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
PHLEQTLSTSPRTIGFVLVLPNVLYTMTAMKAEGVVDRHGVRKSLLWGLC
VMAIR*
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mRNA from alignment at M-pyrifera_M_contig77009:62..229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77009.18152.1 ID=mRNA_M-pyrifera_M_contig77009.18152.1|Name=mRNA_M-pyrifera_M_contig77009.18152.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=168bp|location=Sequence derived from alignment at M-pyrifera_M_contig77009:62..229+ (Macrocystis pyrifera P11B4 male)
CCGCACTTGGAGCAAACGCTTTCCACCTCTCCGAGGACGATCGGTTTCGT
TCTAGTGCTTCCCAACGTTCTCTACACCATGACGGCGATGAAGGCGGAGG
GCGTCGTCGACAGGCACGGCGTACGGAAGAGCCTGCTCTGGGGCCTCTGC
GTGATGGCGATCAGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77009:62..229+

>mRNA_M-pyrifera_M_contig77009.18152.1 ID=mRNA_M-pyrifera_M_contig77009.18152.1|Name=mRNA_M-pyrifera_M_contig77009.18152.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig77009:62..229+ (Macrocystis pyrifera P11B4 male)
CCGCACTTGGAGCAAACGCTTTCCACCTCTCCGAGGACGATCGGTTTCGT
TCTAGTGCTTCCCAACGTTCTCTACACCATGACGGCGATGAAGGCGGAGG
GCGTCGTCGACAGGCACGGCGTACGGAAGAGCCTGCTCTGGGGCCTCTGC
GTGATGGCGATCAGGTGACCGCACTTGGAGCAAACGCTTTCCACCTCTCC
GAGGACGATCGGTTTCGTTCTAGTGCTTCCCAACGTTCTCTACACCATGA
CGGCGATGAAGGCGGAGGGCGTCGTCGACAGGCACGGCGTACGGAAGAGC
CTGCTCTGGGGCCTCTGCGTGATGGCGATCAGGTGA
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