mRNA_M-pyrifera_M_contig7699.18150.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7699.18150.1
Unique NamemRNA_M-pyrifera_M_contig7699.18150.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7699.18150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7699contigM-pyrifera_M_contig7699:5893..8176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size253
Cds size234
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7699.18150.1prot_M-pyrifera_M_contig7699.18150.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7699 5911..8176 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816670.2360494-UTR-M-pyrifera_M_contig7699:5892..59101622816670.2360494-UTR-M-pyrifera_M_contig7699:5892..5910Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7699 5893..5910 +
1692278109.507054-UTR-M-pyrifera_M_contig7699:5892..59101692278109.507054-UTR-M-pyrifera_M_contig7699:5892..5910Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7699 5893..5910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816670.2485273-CDS-M-pyrifera_M_contig7699:5910..59521622816670.2485273-CDS-M-pyrifera_M_contig7699:5910..5952Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7699 5911..5952 +
1692278109.5163743-CDS-M-pyrifera_M_contig7699:5910..59521692278109.5163743-CDS-M-pyrifera_M_contig7699:5910..5952Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7699 5911..5952 +
1622816670.2619395-CDS-M-pyrifera_M_contig7699:6831..68781622816670.2619395-CDS-M-pyrifera_M_contig7699:6831..6878Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7699 6832..6878 +
1692278109.5269835-CDS-M-pyrifera_M_contig7699:6831..68781692278109.5269835-CDS-M-pyrifera_M_contig7699:6831..6878Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7699 6832..6878 +
1622816670.272507-CDS-M-pyrifera_M_contig7699:8031..81761622816670.272507-CDS-M-pyrifera_M_contig7699:8031..8176Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7699 8032..8176 +
1692278109.5384476-CDS-M-pyrifera_M_contig7699:8031..81761692278109.5384476-CDS-M-pyrifera_M_contig7699:8031..8176Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7699 8032..8176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7699.18150.1

>prot_M-pyrifera_M_contig7699.18150.1 ID=prot_M-pyrifera_M_contig7699.18150.1|Name=mRNA_M-pyrifera_M_contig7699.18150.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
MDAAVPRVPRVGAKLTRRTNKTMTQAERNRTALPMGTSMRTMERMGTGRT
TVMPEEQEGREILAGVPAETTMKTKETG
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mRNA from alignment at M-pyrifera_M_contig7699:5893..8176+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7699.18150.1 ID=mRNA_M-pyrifera_M_contig7699.18150.1|Name=mRNA_M-pyrifera_M_contig7699.18150.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2284bp|location=Sequence derived from alignment at M-pyrifera_M_contig7699:5893..8176+ (Macrocystis pyrifera P11B4 male)
GCCGTAGCCGCGGCAAGCATGGACGCGGCGGTTCCAAGGGTGCCAAGGGT
GGGCGCCAAGGTGCAGTCTAGTGCAGTGCAGTGCAGCCCGGGATATGTTG
CCCACCTCGTTCTGACCGGGAATAACGGTTAAAATATAATATGAACATCA
AACGGAGATTATATTACCGGCCAGAGTAGTACAGGCGTTTGGGCCTCTTG
TTTTTTTTTTGTTTTTTTTTGGCGGCTGCTGTCAGTAGTTTTCTTCGCGG
GCGCGACTACTGTCGTGTATTATCAATATCAATGTATTAATATATTAATA
CGACGTGTTTTTTGGGATACGGTGTCTGTTTTTGTTTTTGTTTTTGTTTT
TGTGCGTCTGCTGCACAGGCAGTGTTGGAGGCGGTCGCTACGGTAGCCTG
TCAATTGTGCATGTACTGCTGTGCGTGTACTGCTGTACTGCTGTACTGCT
GTAGTAGCTTGTGCTTGTGACGCGTGTGTTGGAGAGGGTACTCTTTTTGT
CGTTCTGTGGCATTGCATGATCCAATGTTGACACTGGCATCGCCCGTTAC
GGTACTATAAGCCAGGTGCGAGCTATGTGGTATGGTATCAATATTTTGCG
CAGTCCTCATGCGACGGTATGCTACCAGCCTTTCTGTGTGTAGGACAAGC
AGATTTTGATTGGGGGAATGGTATGGCTTTAATTTGGTCTATGACCTCAG
GTTGTTCGATGGCCTCTGATCGATCAGTCGATGGCTTTTTTCTGACTGCT
GTGGCTCGTGATCGCTCGCTCATGTTGATGTTTGTACGACGTACCGGGTA
TGCGTTTAGTTCACGCCACCTCACGTTTTATATTACATTACCGTACCTTT
CCTCACGTTATCTCACCTTTTTACGTTAAGTTGCCTCACGTTACCCCACC
TTTTTATATTTCCTTGCCTTCCCGTACCTGACCTTACAGCTTACTCGGAG
GACGAACAAGACTATGACTCAGGCGGAAAGAAACAGGTGCTTGGTACAAC
ACTGGACCTATATGCTGAACTATCTGTTCATATATATGTTGTAGATGTTG
GAGCTAAGATGTAGACACAGGACCTCAATGCTGCAATGTTGCAGATATTG
GGGCTAAGCTGGACATTCTACGTTTCTCCAAGGCGTAAAATTTGCCGGCA
ATTCGGACGATATCTTCGTATGTTGCAGCTGAATCTTGCAGCTGGATCGA
ACGTCTTCCTTCGCGATTTTACCGAACGACGGAAGAAAAGCGTGTTTTTT
GTCAGGCGCTCATAGACCATATCTACATACGAGTGTGCTGTACTGCATGC
ATGTATTCGTACGAAGTATACCAGGTATACAAACTACTGTACATACCCGG
GGGATGTTGGTGTACCGATTTGTTACTGTACTGCCCTCCAATGATGCGGC
GTATCCTGCCCTTCATTCACCGTTCTGCCCTCCAACGACGCAACGATGCG
GCGTAACCTATTAATACCATTTCGTTATTGTGTCCTACCGACCGACCTTC
CAGTCAATGATCGTGCTGCCCTCCGACGACGCTGCGTAACCTACCATTTC
GTGACTGTTCTACCGACCTACCGACCAACATTCCAATGGCCGTGCTGCCT
TTCAAGGATGCGGCGTAACCTCCCTTTTCGTGACCGTGTCCTACCTCTGA
CTACCGACCCATCAGTAGCAATTGCCGTGTTGCCCTCCAGCGATGCGGCG
GAACCTACCATTTGTTGGCCGTATTCGACCGACCGATCTACCAACCGACC
TACTATTGGCCGTGCTGCCCTTCAACGATGCGGCGTAGCCTACCTTTTCG
TGACCGTGTCCTATCTACCAACTCAACGGTACCAGTTACCATGCTCTCTT
GCAAGAGCGCGGCGTAACCTAAAATTTCGTGAGCGTTTCCTACCGACCGA
CCGACTTGCCAATGACCGTGCTTCCCTCCAACAATGCGGCGAAACCTATT
TCGTGACCGTGTCTGACATACCAACTGACCTGCCAACCGACCTGGTACTA
ATGACCGTTTTGCCCTCAACGATGCGGTGTACCCTTAAGCTTTATTGATA
TTAATAGTAAATAGTAGCTTTTTGTGCCCGTGTCGTACTGACCTACCCAC
TCTAACCTACCTGCCTGCCAATCGACCGACCGAGCACAGAACGGCGCTGC
CAATGGGCACCAGCATGAGGACGATGGAGAGGATGGGGACTGGAAGGACG
ACGGTGATGCCGGAAGAGCAGGAAGGGAGGGAGATACTGGCGGGAGTGCC
AGCGGAGACTACGATGAAGACTAAAGAGACGGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7699:5893..8176+

>mRNA_M-pyrifera_M_contig7699.18150.1 ID=mRNA_M-pyrifera_M_contig7699.18150.1|Name=mRNA_M-pyrifera_M_contig7699.18150.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig7699:5893..8176+ (Macrocystis pyrifera P11B4 male)
ATGGACGCGGCGGTTCCAAGGGTGCCAAGGGTGGGCGCCAAGATGGACGC
GGCGGTTCCAAGGGTGCCAAGGGTGGGCGCCAAGCTTACTCGGAGGACGA
ACAAGACTATGACTCAGGCGGAAAGAAACAGCTTACTCGGAGGACGAACA
AGACTATGACTCAGGCGGAAAGAAACAGAACGGCGCTGCCAATGGGCACC
AGCATGAGGACGATGGAGAGGATGGGGACTGGAAGGACGACGGTGATGCC
GGAAGAGCAGGAAGGGAGGGAGATACTGGCGGGAGTGCCAGCGGAGACTA
CGATGAAGACTAAAGAGACGGGAAACGGCGCTGCCAATGGGCACCAGCAT
GAGGACGATGGAGAGGATGGGGACTGGAAGGACGACGGTGATGCCGGAAG
AGCAGGAAGGGAGGGAGATACTGGCGGGAGTGCCAGCGGAGACTACGATG
AAGACTAAAGAGACGGGA
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