mRNA_M-pyrifera_M_contig76984.18147.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76984.18147.1
Unique NamemRNA_M-pyrifera_M_contig76984.18147.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76984.18147.1 vs. uniprot
Match: A0A2D5W4Q8_9BACT (N-acetyltransferase domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5W4Q8_9BACT)

HSP 1 Score: 157 bits (398), Expect = 3.070e-41
Identity = 107/309 (34.63%), Postives = 152/309 (49.19%), Query Frame = 1 
Query:    1 FFARLGYRGAFNLYTIDAQRAHLG---GFEAEGALEWGGLSAEDIPRLAELYAHCYRGVSGSEVRSHAPLDWESSSDSAYTVVHRR--ADLPV--------------AYLRFRLRERLEIMECAAADPAAVRAVIGFVHRIAGEHNRVGADVHVPPSHPVFRELFRAGCMAEGNNFHDEGRLLITNWQRFLEATGTSFARALHTARTPAVSFGIETRSGRQEWRLTARDKDELEVTAGRAD-QHLDLPEGWAEPLMTGRLDWRDLAFAQAL-------PEDFDHQLSSLLFPPGTPMWTYSPAFEIAYG 846
            ++ R GY  AF+L  + A    LG   G E + A  W G+   D+P L  L+   +   +G+E RS A +DW S ++ ++T+V     AD P               AYLRFR+RE ++I EC A DP  V A++ F  R+  EH R  A+  +P +H V RELFR GC  E NNF     L I +W      T +S+A  L  A   ++S  I+  +        A    EL +   R + +HL +P+GWA  L+TG     DL F + +       PE    +L   LFP   PMWT+S  +E+A G
Sbjct:  184 YYPRFGYGPAFDLQLVRAPERLLGEAPGEEGDTAA-WRGIEGHDLPALVALHWRAHAAGNGAERRSAAAMDWASLAEGSHTLVWTESGADAPSGSANGGSVGDGGPRAYLRFRVRESVQITECGARDPRGVSAILAFTARLVREHARPQAEFRIPFAHAVSRELFRRGCTFESNNFGGAAMLQIGDWPGLFRHTDSSWAAVLAGAGHRSISLEIDGAT-----HSLALVDGELRLGRKRDNLRHLVVPDGWAPGLITGHRCAADLIFDETILSRSQLDPEGL--RLLPALFPKSQPMWTHSTVYEVADG 484
[Close]
BLAST of mRNA_M-pyrifera_M_contig76984.18147.1 vs. uniprot
Match: A0A2E5X5E4_9BACT (N-acetyltransferase domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E5X5E4_9BACT)

HSP 1 Score: 156 bits (395), Expect = 3.100e-41
Identity = 105/295 (35.59%), Postives = 148/295 (50.17%), Query Frame = 1 
Query:    1 FFARLGYRGAFNLYTIDAQRAHLGGFEAE-GALE-WGGLSAEDIPRLAELYAHCYRGVSGSEVRSHAPLDWESSSDSAYTVVHRRADL---PVAYLRFRLRERLEIMECAAADPAAVRAVIGFVHRIAGEHNRVGADVHVPPSHPVFRELFRAGCMAEGNNFHDEGRLLITNWQRFLEATGTSFARALHTARTPAVSFGIETRSGRQEWRLTARDKDELEVTAGRAD-QHLDLPEGWAEPLMTGRLDWRDLAF-------AQALPEDFDHQLSSLLFPPGTPMWTYSPAFEIAYG 846
            ++ R GY  AFNL  + A    LG    E G  + W G+  +D+P L  L  H +  V+G+E RS A +DW S ++ ++T+V         P AYLRFR+RE ++I EC A DP  V  ++ F  R+  EH R  A+  +P +H V RELFR G   E NNF     L I +W      T  S+A  L  A   ++S  I+  +      L+ RD   L +   R + +HL +P   A  L+TG     +L F       +Q  PE    +L   LFP  TP+WTYS  +E+A G
Sbjct:  141 YYPRFGYGPAFNLQLVRAPAEVLGELPGEEGETDAWRGIEGDDLPALVSLQWHSHGDVNGAEKRSPAAMDWASLAEGSHTLVLPGTGPEAGPRAYLRFRVRESVQITECGARDPQGVIGILAFTARLVREHARPQAEFRIPHAHAVSRELFRRGATFESNNFGGAAMLKICDWPELFRHTADSWATVLAGAGHRSISLEIDGATHH----LSLRD-GRLHLGTERDNLRHLVIPAELAPGLITGHFSAAELLFDGEQLSRSQLDPEGL--KLLPSLFPHSTPLWTYSTVYEVADG 428
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76984.18147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2D5W4Q8_9BACT3.070e-4134.63N-acetyltransferase domain-containing protein n=1 ... [more]
A0A2E5X5E4_9BACT3.100e-4135.59N-acetyltransferase domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76984contigM-pyrifera_M_contig76984:167..1015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size849
Cds size849
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816670.1501412-CDS-M-pyrifera_M_contig76984:166..10151622816670.1501412-CDS-M-pyrifera_M_contig76984:166..1015Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76984 167..1015 -
1692278109.470888-CDS-M-pyrifera_M_contig76984:166..10151692278109.470888-CDS-M-pyrifera_M_contig76984:166..1015Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76984 167..1015 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76984.18147.1prot_M-pyrifera_M_contig76984.18147.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76984 167..1015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76984.18147.1

>prot_M-pyrifera_M_contig76984.18147.1 ID=prot_M-pyrifera_M_contig76984.18147.1|Name=mRNA_M-pyrifera_M_contig76984.18147.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=283bp
FFARLGYRGAFNLYTIDAQRAHLGGFEAEGALEWGGLSAEDIPRLAELYA
HCYRGVSGSEVRSHAPLDWESSSDSAYTVVHRRADLPVAYLRFRLRERLE
IMECAAADPAAVRAVIGFVHRIAGEHNRVGADVHVPPSHPVFRELFRAGC
MAEGNNFHDEGRLLITNWQRFLEATGTSFARALHTARTPAVSFGIETRSG
RQEWRLTARDKDELEVTAGRADQHLDLPEGWAEPLMTGRLDWRDLAFAQA
LPEDFDHQLSSLLFPPGTPMWTYSPAFEIAYG*
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mRNA from alignment at M-pyrifera_M_contig76984:167..1015-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76984.18147.1 ID=mRNA_M-pyrifera_M_contig76984.18147.1|Name=mRNA_M-pyrifera_M_contig76984.18147.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=849bp|location=Sequence derived from alignment at M-pyrifera_M_contig76984:167..1015- (Macrocystis pyrifera P11B4 male)
TTCTTTGCCCGCCTGGGCTACCGCGGCGCCTTCAACCTGTACACGATCGA
CGCCCAGCGCGCGCACCTCGGCGGCTTCGAGGCCGAAGGCGCGCTCGAAT
GGGGCGGGCTCTCCGCCGAGGACATCCCGCGCCTCGCCGAGCTGTACGCG
CACTGCTACCGCGGCGTGTCCGGCAGCGAGGTGCGCAGCCACGCGCCGCT
GGACTGGGAGAGCAGCAGCGACTCGGCGTACACCGTCGTGCACCGCCGCG
CCGACCTGCCGGTCGCGTACCTGCGCTTCCGGCTGCGCGAACGGCTCGAG
ATCATGGAGTGCGCCGCCGCCGACCCCGCAGCCGTGCGCGCGGTGATCGG
CTTCGTCCACCGCATCGCCGGCGAGCACAACCGCGTCGGCGCCGACGTCC
ACGTGCCGCCGTCGCACCCGGTCTTCCGCGAACTGTTCCGCGCGGGCTGC
ATGGCCGAGGGCAACAACTTCCACGACGAAGGGCGACTCCTGATCACCAA
CTGGCAGCGCTTCCTCGAAGCGACCGGGACCTCGTTCGCGCGGGCGCTGC
ACACCGCGCGCACCCCGGCCGTGTCGTTCGGCATCGAGACGCGCTCCGGC
CGCCAGGAGTGGCGGCTCACCGCCCGCGACAAGGACGAGCTCGAGGTCAC
CGCCGGCCGCGCCGACCAGCACCTCGACCTGCCCGAGGGCTGGGCCGAGC
CGTTGATGACCGGGCGCCTGGACTGGCGCGACCTCGCGTTCGCCCAAGCC
CTGCCCGAGGACTTCGACCACCAGCTGTCGAGCCTGCTCTTTCCGCCGGG
CACGCCGATGTGGACGTACTCGCCGGCGTTCGAGATCGCGTACGGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76984:167..1015-

>mRNA_M-pyrifera_M_contig76984.18147.1 ID=mRNA_M-pyrifera_M_contig76984.18147.1|Name=mRNA_M-pyrifera_M_contig76984.18147.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1698bp|location=Sequence derived from alignment at M-pyrifera_M_contig76984:167..1015- (Macrocystis pyrifera P11B4 male)
TTCTTTGCCCGCCTGGGCTACCGCGGCGCCTTCAACCTGTACACGATCGA
CGCCCAGCGCGCGCACCTCGGCGGCTTCGAGGCCGAAGGCGCGCTCGAAT
GGGGCGGGCTCTCCGCCGAGGACATCCCGCGCCTCGCCGAGCTGTACGCG
CACTGCTACCGCGGCGTGTCCGGCAGCGAGGTGCGCAGCCACGCGCCGCT
GGACTGGGAGAGCAGCAGCGACTCGGCGTACACCGTCGTGCACCGCCGCG
CCGACCTGCCGGTCGCGTACCTGCGCTTCCGGCTGCGCGAACGGCTCGAG
ATCATGGAGTGCGCCGCCGCCGACCCCGCAGCCGTGCGCGCGGTGATCGG
CTTCGTCCACCGCATCGCCGGCGAGCACAACCGCGTCGGCGCCGACGTCC
ACGTGCCGCCGTCGCACCCGGTCTTCCGCGAACTGTTCCGCGCGGGCTGC
ATGGCCGAGGGCAACAACTTCCACGACGAAGGGCGACTCCTGATCACCAA
CTGGCAGCGCTTCCTCGAAGCGACCGGGACCTCGTTCGCGCGGGCGCTGC
ACACCGCGCGCACCCCGGCCGTGTCGTTCGGCATCGAGACGCGCTCCGGC
CGCCAGGAGTGGCGGCTCACCGCCCGCGACAAGGACGAGCTCGAGGTCAC
CGCCGGCCGCGCCGACCAGCACCTCGACCTGCCCGAGGGCTGGGCCGAGC
CGTTGATGACCGGGCGCCTGGACTGGCGCGACCTCGCGTTCGCCCAAGCC
CTGCCCGAGGACTTCGACCACCAGCTGTCGAGCCTGCTCTTTCCGCCGGG
CACGCCGATGTGGACGTACTCGCCGGCGTTCGAGATCGCGTACGGCTGAT
TCTTTGCCCGCCTGGGCTACCGCGGCGCCTTCAACCTGTACACGATCGAC
GCCCAGCGCGCGCACCTCGGCGGCTTCGAGGCCGAAGGCGCGCTCGAATG
GGGCGGGCTCTCCGCCGAGGACATCCCGCGCCTCGCCGAGCTGTACGCGC
ACTGCTACCGCGGCGTGTCCGGCAGCGAGGTGCGCAGCCACGCGCCGCTG
GACTGGGAGAGCAGCAGCGACTCGGCGTACACCGTCGTGCACCGCCGCGC
CGACCTGCCGGTCGCGTACCTGCGCTTCCGGCTGCGCGAACGGCTCGAGA
TCATGGAGTGCGCCGCCGCCGACCCCGCAGCCGTGCGCGCGGTGATCGGC
TTCGTCCACCGCATCGCCGGCGAGCACAACCGCGTCGGCGCCGACGTCCA
CGTGCCGCCGTCGCACCCGGTCTTCCGCGAACTGTTCCGCGCGGGCTGCA
TGGCCGAGGGCAACAACTTCCACGACGAAGGGCGACTCCTGATCACCAAC
TGGCAGCGCTTCCTCGAAGCGACCGGGACCTCGTTCGCGCGGGCGCTGCA
CACCGCGCGCACCCCGGCCGTGTCGTTCGGCATCGAGACGCGCTCCGGCC
GCCAGGAGTGGCGGCTCACCGCCCGCGACAAGGACGAGCTCGAGGTCACC
GCCGGCCGCGCCGACCAGCACCTCGACCTGCCCGAGGGCTGGGCCGAGCC
GTTGATGACCGGGCGCCTGGACTGGCGCGACCTCGCGTTCGCCCAAGCCC
TGCCCGAGGACTTCGACCACCAGCTGTCGAGCCTGCTCTTTCCGCCGGGC
ACGCCGATGTGGACGTACTCGCCGGCGTTCGAGATCGCGTACGGCTGA
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