mRNA_M-pyrifera_M_contig7698.18145.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7698.18145.1
Unique NamemRNA_M-pyrifera_M_contig7698.18145.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7698.18145.1 vs. uniprot
Match: A0A7J5XQP8_DISMA (Smu-1 suppressor of mec-8 and unc-52 protein homolog n=1 Tax=Dissostichus mawsoni TaxID=36200 RepID=A0A7J5XQP8_DISMA)

HSP 1 Score: 111 bits (278), Expect = 2.040e-27
Identity = 86/113 (76.11%), Postives = 98/113 (86.73%), Query Frame = 1
Query:    1 MHDEAVLCGGFSRDGEHLATGSTDGKMKVWKVATGQCLRRFESAHTQGVTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTATYMHDGAKVVTGSADGTVK 339
            M D+AVLC GFSRD E LATG+ DGK+KVWK+ +GQCLRRFE AH++GVT  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTS+VN AT+  DG  V++ S+DGTVK
Sbjct:  175 MMDDAVLCMGFSRDTEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSFVNEATFTPDGHHVISASSDGTVK 287          
BLAST of mRNA_M-pyrifera_M_contig7698.18145.1 vs. uniprot
Match: A0A0R3XAU4_HYDTA (WD_REPEATS_REGION domain-containing protein n=1 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3XAU4_HYDTA)

HSP 1 Score: 100 bits (250), Expect = 7.710e-24
Identity = 50/112 (44.64%), Postives = 65/112 (58.04%), Query Frame = 1
Query:    7 DEAVLCGGFSRDGEHLATGSTDGKMKVWKVATGQCLRRFESAHTQGVTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTATYMHDGAKVVTGSADGTVKV 342
            D AVLC  FSRD E LA+GS DGK+K+W++ +GQCLRRFE AHT+GVT+                              KEF GHT +VN   +  DG  V++GSADG+V++
Sbjct:    2 DTAVLCLAFSRDSELLASGSMDGKVKIWRIQSGQCLRRFEKAHTKGVTAAHFSMDNVQLLTASYDHTIRIHGMKSGNLLKEFVGHTGFVNDVVFSPDGRHVLSGSADGSVRI 113          
BLAST of mRNA_M-pyrifera_M_contig7698.18145.1 vs. uniprot
Match: A0A813CGR5_9DINO (Smu1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CGR5_9DINO)

HSP 1 Score: 96.7 bits (239), Expect = 2.960e-23
Identity = 64/113 (56.64%), Postives = 79/113 (69.91%), Query Frame = 1
Query:    1 MHDEAVLCGGFSRDGEHLATGSTDGKMKVWKVATGQCLRRFESAHTQGVTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTATYMHDGAKVVTGSADGTVK 339
            MH++A+LC  FS+DG+ LA+GS DG +KVWKVATG CLR+  +AH QG+T  XXXXXXXXXXXXXXXX             KE+R H SYVN      DG+K++T S+DG VK
Sbjct:   36 MHNDAILCLAFSKDGDMLASGSRDGLIKVWKVATGACLRKLPAAHPQGITXXXXXXXXXXXXXXXXXXTARMHGLRSAKMLKEYREHASYVNDVKVSMDGSKLITASSDGDVK 148          
BLAST of mRNA_M-pyrifera_M_contig7698.18145.1 vs. uniprot
Match: A0A2C6KMV8_9APIC (WD40 repeat-containing protein SMU1 n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6KMV8_9APIC)

HSP 1 Score: 95.1 bits (235), Expect = 1.490e-21
Identity = 66/114 (57.89%), Postives = 76/114 (66.67%), Query Frame = 1
Query:    1 MHDEAVLCGGFSRDGEHLATGSTDGKMKVWKVATGQCLRRFESAHTQGVTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTATYMHDGAKVVTGSADGTVKV 342
            MH+ AV+   FSRD E LATGS DG++KVW VATGQC R+F+ AH       XXXXXXXXXXXXXXX              KEFRGH ++VN A Y+ D  +VVTGSADG VKV
Sbjct:    2 MHETAVVAVEFSRDSEVLATGSQDGQLKVWLVATGQCARKFDRAHDXXXXXXXXXXXXXXXXXXXXXTTARIHGLKSGKTLKEFRGHLTFVNCALYLPDNTRVVTGSADGRVKV 115          
BLAST of mRNA_M-pyrifera_M_contig7698.18145.1 vs. uniprot
Match: A0A7S0WFI9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WFI9_9CRYP)

HSP 1 Score: 94.7 bits (234), Expect = 6.960e-21
Identity = 47/114 (41.23%), Postives = 63/114 (55.26%), Query Frame = 1
Query:    1 MHDEAVLCGGFSRDGEHLATGSTDGKMKVWKVATGQCLRRFESAHTQGVTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTATYMHDGAKVVTGSADGTVKV 342
            MH++AVL   +S+D E +ATG   GK+K+WKV TGQC+R+FE AH QGVT L                             KE RGH+SY+N  +Y  DG ++ +  +DG VKV
Sbjct:  156 MHEDAVLSLAWSKDSEIVATGDQAGKIKIWKVRTGQCVRKFERAHVQGVTCLAFSRDSTQLCSASYDASMRMHGLKSGKTLKEMRGHSSYINHCSYTADGLRICSSGSDGWVKV 269          
BLAST of mRNA_M-pyrifera_M_contig7698.18145.1 vs. uniprot
Match: A0A067BYK7_SAPPC (WD40 repeat-containing protein SMU1 n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BYK7_SAPPC)

HSP 1 Score: 94.0 bits (232), Expect = 7.190e-21
Identity = 76/114 (66.67%), Postives = 88/114 (77.19%), Query Frame = 1
Query:    1 MHDEAVLCGGFSRDGEHLATGSTDGKMKVWKVATGQCLRRFESAHTQGVTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTATYMHDGAKVVTGSADGTVKV 342
            MH+  V    FSRDG+ LAT S DGK+KVWK++TGQCLRRFE AH   + S+ XXXXXXXXXXXXXXXXXXXXXXXXXXXX EF GH  YVN A +  D +KV++ S DGT+KV
Sbjct:   35 MHEVGVSAEAFSRDGDLLATASVDGKVKVWKLSTGQCLRRFEHAHGNSIHSICXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFHGHDGYVNHAVFSTDASKVISASCDGTLKV 148          
BLAST of mRNA_M-pyrifera_M_contig7698.18145.1 vs. uniprot
Match: A0A812D2T2_SEPPH (SMU1 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812D2T2_SEPPH)

HSP 1 Score: 92.4 bits (228), Expect = 1.340e-19
Identity = 76/109 (69.72%), Postives = 89/109 (81.65%), Query Frame = 1
Query:    1 MHDEAVLCGGFSRDGEHLATGSTDGKMKVWKVATGQCLRRFESAHTQGVTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTATYMHDGAKVVTGSAD 327
            M D+AVLC  FSRD E LATGS DGK+KVWK+ TGQCLR+FE AH +GVT  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  FRGH+S+VN A +  DG  +++ S++
Sbjct:  225 MMDDAVLCMCFSRDSEMLATGSQDGKIKVWKLLTGQCLRKFERAHAKGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRGHSSFVNDAVFTQDGHHIISASSN 333          
BLAST of mRNA_M-pyrifera_M_contig7698.18145.1 vs. uniprot
Match: A0A7S2P5I5_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P5I5_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.940e-19
Identity = 76/114 (66.67%), Postives = 92/114 (80.70%), Query Frame = 1
Query:    1 MHDEAVLCGGFSRDGEHLATGSTDGKMKVWKVATGQCLRRFESAHTQGVTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTATYMHDGAKVVTGSADGTVKV 342
            +HD AVL   FSRDGE LATGS+DG ++VWK+ TG+CLR+FE AH+      XXXXXXXXXXXXXXXXXXXXXXXXXXXXX   RGHTSY+NT TY+++  K+ T +ADGTV++
Sbjct:  166 LHDTAVLAINFSRDGEMLATGSSDGMVRVWKIMTGKCLRQFEHAHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGHTSYINTCTYVNE-MKIATSAADGTVRI 278          
BLAST of mRNA_M-pyrifera_M_contig7698.18145.1 vs. uniprot
Match: A7AQS6_BABBO (WD40 repeat-containing protein SMU1 n=1 Tax=Babesia bovis TaxID=5865 RepID=A7AQS6_BABBO)

HSP 1 Score: 91.7 bits (226), Expect = 2.850e-19
Identity = 44/114 (38.60%), Postives = 62/114 (54.39%), Query Frame = 1
Query:    1 MHDEAVLCGGFSRDGEHLATGSTDGKMKVWKVATGQCLRRFESAHTQGVTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTATYMHDGAKVVTGSADGTVKV 342
            +HD  ++    SRD E LA+G  DG +K+WK+ATG+C+R+ ++AH   VT +                             KEF+GH S VN A Y +DG KV+TGS+DG +KV
Sbjct:  273 LHDTLIVSLAVSRDSEILASGDKDGNIKIWKIATGECMRKMDNAHDGAVTCMTFSRNSMSLLTGSFDKTAKIHGLKSGRSIKEFKGHHSIVNAAIYSYDGNKVITGSSDGYIKV 386          
BLAST of mRNA_M-pyrifera_M_contig7698.18145.1 vs. uniprot
Match: U6L9Y7_9EIME (WD40 repeat-containing protein SMU1 n=1 Tax=Eimeria brunetti TaxID=51314 RepID=U6L9Y7_9EIME)

HSP 1 Score: 88.2 bits (217), Expect = 5.300e-19
Identity = 41/107 (38.32%), Postives = 58/107 (54.21%), Query Frame = 1
Query:   22 CGGFSRDGEHLATGSTDGKMKVWKVATGQCLRRFESAHTQGVTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFRGHTSYVNTATYMHDGAKVVTGSADGTVKV 342
            C  FS DG +LA+GS  G++KVW VATGQC+++ + AH   + S+                             KEFRGH ++VN A Y+ D  +V+TGSADG +K+
Sbjct:   43 CAAFSPDGRYLASGSQTGQLKVWLVATGQCIKKIDKAHDAAIASIVFSKDSTHLLTGSFDTTARIHGLKAGKTLKEFRGHLTFVNCALYLPDNTRVITGSADGKIKI 149          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7698.18145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7J5XQP8_DISMA2.040e-2776.11Smu-1 suppressor of mec-8 and unc-52 protein homol... [more]
A0A0R3XAU4_HYDTA7.710e-2444.64WD_REPEATS_REGION domain-containing protein n=1 Ta... [more]
A0A813CGR5_9DINO2.960e-2356.64Smu1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A2C6KMV8_9APIC1.490e-2157.89WD40 repeat-containing protein SMU1 n=1 Tax=Cystoi... [more]
A0A7S0WFI9_9CRYP6.960e-2141.23Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A067BYK7_SAPPC7.190e-2166.67WD40 repeat-containing protein SMU1 n=1 Tax=Saprol... [more]
A0A812D2T2_SEPPH1.340e-1969.72SMU1 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0... [more]
A0A7S2P5I5_9STRA1.940e-1966.67WD40 repeat-containing protein SMU1 n=1 Tax=Leptoc... [more]
A7AQS6_BABBO2.850e-1938.60WD40 repeat-containing protein SMU1 n=1 Tax=Babesi... [more]
U6L9Y7_9EIME5.300e-1938.32WD40 repeat-containing protein SMU1 n=1 Tax=Eimeri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7698contigM-pyrifera_M_contig7698:5301..7057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeApicomplexa
Seed ortholog score90.5
Seed ortholog evalue5.4e-16
Seed eggNOG ortholog5865.XP_001610463.1
KEGG koko:K13111
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Lissencephaly type-1-like homology motif
EggNOG OGs3KBQJ@422676,3YA7T@5794,3Z42D@5863,KOG0275@1,KOG0275@2759
COG Functional cat.S
Best tax levelPiroplasmida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons3
Model size342
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7698.18145.1prot_M-pyrifera_M_contig7698.18145.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7698 5301..7057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816670.0640059-CDS-M-pyrifera_M_contig7698:5300..53691622816670.0640059-CDS-M-pyrifera_M_contig7698:5300..5369Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7698 5301..5369 +
1692278109.4208155-CDS-M-pyrifera_M_contig7698:5300..53691692278109.4208155-CDS-M-pyrifera_M_contig7698:5300..5369Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7698 5301..5369 +
1622816670.076294-CDS-M-pyrifera_M_contig7698:6114..63001622816670.076294-CDS-M-pyrifera_M_contig7698:6114..6300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7698 6115..6300 +
1692278109.4339232-CDS-M-pyrifera_M_contig7698:6114..63001692278109.4339232-CDS-M-pyrifera_M_contig7698:6114..6300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7698 6115..6300 +
1622816670.0877898-CDS-M-pyrifera_M_contig7698:6970..70571622816670.0877898-CDS-M-pyrifera_M_contig7698:6970..7057Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7698 6971..7057 +
1692278109.444674-CDS-M-pyrifera_M_contig7698:6970..70571692278109.444674-CDS-M-pyrifera_M_contig7698:6970..7057Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7698 6971..7057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7698.18145.1

>prot_M-pyrifera_M_contig7698.18145.1 ID=prot_M-pyrifera_M_contig7698.18145.1|Name=mRNA_M-pyrifera_M_contig7698.18145.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
MHDEAVLCGGFSRDGEHLATGSTDGKMKVWKVATGQCLRRFESAHTQGVT
SLAFARDGSQLLSSSRDQTARIHGLKSGKMLKEFRGHTSYVNTATYMHDG
AKVVTGSADGTVKV
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mRNA from alignment at M-pyrifera_M_contig7698:5301..7057+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7698.18145.1 ID=mRNA_M-pyrifera_M_contig7698.18145.1|Name=mRNA_M-pyrifera_M_contig7698.18145.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1757bp|location=Sequence derived from alignment at M-pyrifera_M_contig7698:5301..7057+ (Macrocystis pyrifera P11B4 male)
ATGCACGACGAGGCCGTGCTGTGCGGCGGCTTCAGCAGAGACGGAGAGCA CCTCGCGACGGGCAGCACTGTAAGTCGCGCCAACCGCCTCCTGTCTTCGT TCTGCTGTGCTGGCCTGCTGATGGGGGGCTGGTGTTCTGTGTTTTGTGTT TTGTTTTCGGCCATATTCATAGCCCCAAAACTTTTTTATTGTTGTTGTGA TGAACCAACCACCACCCTATATGTATATATGGTGTTGTATGAACCACTAC TTGTGTTGAAGCAATCACCAGCCTTTCTGTTACGAGTGTTTTACACCAAC TATCACTTCTATTCCATGGCGTTGAACCAATAACCACCCTGTCGTTTTTT TTTTTTTTTCTTCAACCAATCGCCACTCTCTCTGTTGTTCTGTGGAACCA ATAACAATTGCTGTCTATTTTTGTGTTGCGACAACCACCACCCTATTTAT ATTGAACTTGGAGGTATTTATCGTGTTATTTTCACCGGCCACCCCCCCAC CAATGACCCGGTAAGTATTTCGGTGCTGAACAAACCACCATGTTCCGTCT GTTTTGCGTTGATCAAAATTCACCACATCTGTTTTTGTGTTGTACCCATC AACCGCATCCAGTCTACATGTTACCACCGTGTTTTTTTAACCGATCACCA CCCTGTCTAATATGGTGCTCAACCAATCACCACTGTCTATTACGGTACAT AAACCAATCATGACCCTGTCCGTTGTCGTGCAGAACCAATCACCACCCTA TCTGTTGTGGTGAAGAACCAACCACCACCCTGTATTGCGTTGTGTTTAAC CAATCACCGCTCAGGACGGCAAGATGAAGGTGTGGAAGGTGGCTACGGGG CAGTGCCTCAGGCGCTTCGAGAGCGCCCATACACAGGGGGTAACCTCGCT AGCCTTTGCCAGGGACGGCTCGCAGCTGCTGTCGTCCTCCCGGGACCAGA CGGCGCGCATCCACGGGCTCAAGTCCGGCAAAATGCTCAAGGAGTTCCGG GTAAGAAAATTAGGGAGGCAGGGAGGAGGGAGGAAGGGAAGGAGAGGGAG GTAGGAGGGAAATAGGAGGGACGGAATAACATCGGGGGCAGGGGGGGGGG GCGTACTCGTTTGTTGCTTGACGTAGTCATTCGACCATTGAGGGAAGGGT CGATGGAAAGGGTGTCAATCGGAGCGGGGGGGGGGGCGGGTGGGGTCATG GTAAAGGCCTACGATTACGGGGAGGGGGGGGGGGAAGGGCGGGGCGAGGG GGGAGGCTTGATTATCCGTGATTGTGATGTTGTACGTGAATTATCGTTTC TGCTCTAGACAATCGTCTTGTGTTCAAAAACAAAAACAGACCCTTTTGTG TCTCCGGCCTAGACACCCAGGGGTCAGTGACGCCATGGCCGTAGCCGCAG ACGCGCTGGATACGCACGGGGAAACAGCCATGTTGGCCGTTCCTTGTTTC CTCCGGTTCCAGCTTTGGAAGCAAAGCAATTGGCTGGATATACATATCAG GGTAGCCATTTTTTCCTGCGGTGTTATGTTACCTCGCCCTTTCTTCATTC CCTTGACGATGGCTGACGACGTGAGCGCCCCCTCCCCCGTGCGCTCCCAC CCCGTCGCGCACCGTTCCGGGGAACGTTCTCGTTTTTACTTCATTTTTCT TACATTTCCCATTGATGCAGGGGCATACTTCCTACGTCAACACGGCGACT TACATGCACGACGGCGCGAAGGTGGTGACGGGATCGGCAGACGGAACGGT CAAGGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7698:5301..7057+

>mRNA_M-pyrifera_M_contig7698.18145.1 ID=mRNA_M-pyrifera_M_contig7698.18145.1|Name=mRNA_M-pyrifera_M_contig7698.18145.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig7698:5301..7057+ (Macrocystis pyrifera P11B4 male)
ATGCACGACGAGGCCGTGCTGTGCGGCGGCTTCAGCAGAGACGGAGAGCA
CCTCGCGACGGGCAGCACTATGCACGACGAGGCCGTGCTGTGCGGCGGCT
TCAGCAGAGACGGAGAGCACCTCGCGACGGGCAGCACTGACGGCAAGATG
AAGGTGTGGAAGGTGGCTACGGGGCAGTGCCTCAGGCGCTTCGAGAGCGC
CCATACACAGGGGGTAACCTCGCTAGCCTTTGCCAGGGACGGCTCGCAGC
TGCTGTCGTCCTCCCGGGACCAGACGGCGCGCATCCACGGGCTCAAGTCC
GGCAAAATGCTCAAGGAGTTCCGGGACGGCAAGATGAAGGTGTGGAAGGT
GGCTACGGGGCAGTGCCTCAGGCGCTTCGAGAGCGCCCATACACAGGGGG
TAACCTCGCTAGCCTTTGCCAGGGACGGCTCGCAGCTGCTGTCGTCCTCC
CGGGACCAGACGGCGCGCATCCACGGGCTCAAGTCCGGCAAAATGCTCAA
GGAGTTCCGGGGGCATACTTCCTACGTCAACACGGCGACTTACATGCACG
ACGGCGCGAAGGTGGTGACGGGATCGGCAGACGGAACGGTCAAGGTAGGG
CATACTTCCTACGTCAACACGGCGACTTACATGCACGACGGCGCGAAGGT
GGTGACGGGATCGGCAGACGGAACGGTCAAGGTA
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