mRNA_M-pyrifera_M_contig76978.18143.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76978.18143.1
Unique NamemRNA_M-pyrifera_M_contig76978.18143.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76978.18143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76978contigM-pyrifera_M_contig76978:247..924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size678
Cds size678
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816670.0002928-CDS-M-pyrifera_M_contig76978:246..9241622816670.0002928-CDS-M-pyrifera_M_contig76978:246..924Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76978 247..924 +
1692278109.3874898-CDS-M-pyrifera_M_contig76978:246..9241692278109.3874898-CDS-M-pyrifera_M_contig76978:246..924Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76978 247..924 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76978.18143.1prot_M-pyrifera_M_contig76978.18143.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76978 247..924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76978.18143.1

>prot_M-pyrifera_M_contig76978.18143.1 ID=prot_M-pyrifera_M_contig76978.18143.1|Name=mRNA_M-pyrifera_M_contig76978.18143.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=226bp
MPDWLLTVMVIVGFVLAVGALFWWLVQKSLKRTATMQEIAKTRGWVFKED
EDSQLIRQRFQSIPIFNKGNSYTSSNLMFGKLDDIEIWICDYTYWGHVKQ
MHADNETSVSSSQKQRQTLICLQFPDADWPTFDITLNLGTAKLSEYSSKN
TIVPTTDDAFFKRYSVCSSIESDQTAVANLITKEVQALFPADKKLKVQVS
KNEMLLTNYSLQIKTTELESYINVAF
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mRNA from alignment at M-pyrifera_M_contig76978:247..924+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76978.18143.1 ID=mRNA_M-pyrifera_M_contig76978.18143.1|Name=mRNA_M-pyrifera_M_contig76978.18143.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig76978:247..924+ (Macrocystis pyrifera P11B4 male)
ATGCCAGATTGGTTACTAACAGTGATGGTAATTGTTGGGTTTGTACTAGC
CGTTGGGGCTCTTTTCTGGTGGCTGGTTCAGAAAAGCCTTAAGCGTACAG
CTACTATGCAAGAGATTGCTAAAACTAGAGGATGGGTTTTCAAGGAGGAT
GAAGATTCTCAACTTATTCGGCAGCGATTCCAGTCCATTCCTATTTTCAA
TAAAGGCAACTCGTACACCAGTTCAAACCTCATGTTTGGTAAGCTGGACG
ACATTGAAATCTGGATATGCGATTATACCTACTGGGGGCATGTAAAACAA
ATGCATGCGGACAATGAGACAAGTGTTAGCTCCTCTCAAAAGCAAAGACA
AACATTAATCTGTTTACAGTTTCCTGATGCGGATTGGCCAACCTTCGATA
TTACTTTGAACCTTGGGACTGCCAAACTCTCTGAATACAGTTCAAAAAAT
ACTATTGTACCTACCACAGATGATGCATTCTTCAAAAGGTATAGCGTATG
TTCATCGATAGAATCTGATCAAACAGCGGTAGCCAATTTGATTACTAAAG
AAGTGCAGGCTTTATTTCCAGCAGATAAAAAACTTAAAGTCCAGGTGAGT
AAAAATGAAATGTTACTCACGAATTACAGCTTGCAGATTAAGACTACCGA
ATTGGAGAGCTACATCAATGTGGCCTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76978:247..924+

>mRNA_M-pyrifera_M_contig76978.18143.1 ID=mRNA_M-pyrifera_M_contig76978.18143.1|Name=mRNA_M-pyrifera_M_contig76978.18143.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1356bp|location=Sequence derived from alignment at M-pyrifera_M_contig76978:247..924+ (Macrocystis pyrifera P11B4 male)
ATGCCAGATTGGTTACTAACAGTGATGGTAATTGTTGGGTTTGTACTAGC
CGTTGGGGCTCTTTTCTGGTGGCTGGTTCAGAAAAGCCTTAAGCGTACAG
CTACTATGCAAGAGATTGCTAAAACTAGAGGATGGGTTTTCAAGGAGGAT
GAAGATTCTCAACTTATTCGGCAGCGATTCCAGTCCATTCCTATTTTCAA
TAAAGGCAACTCGTACACCAGTTCAAACCTCATGTTTGGTAAGCTGGACG
ACATTGAAATCTGGATATGCGATTATACCTACTGGGGGCATGTAAAACAA
ATGCATGCGGACAATGAGACAAGTGTTAGCTCCTCTCAAAAGCAAAGACA
AACATTAATCTGTTTACAGTTTCCTGATGCGGATTGGCCAACCTTCGATA
TTACTTTGAACCTTGGGACTGCCAAACTCTCTGAATACAGTTCAAAAAAT
ACTATTGTACCTACCACAGATGATGCATTCTTCAAAAGGTATAGCGTATG
TTCATCGATAGAATCTGATCAAACAGCGGTAGCCAATTTGATTACTAAAG
AAGTGCAGGCTTTATTTCCAGCAGATAAAAAACTTAAAGTCCAGGTGAGT
AAAAATGAAATGTTACTCACGAATTACAGCTTGCAGATTAAGACTACCGA
ATTGGAGAGCTACATCAATGTGGCCTTCATGCCAGATTGGTTACTAACAG
TGATGGTAATTGTTGGGTTTGTACTAGCCGTTGGGGCTCTTTTCTGGTGG
CTGGTTCAGAAAAGCCTTAAGCGTACAGCTACTATGCAAGAGATTGCTAA
AACTAGAGGATGGGTTTTCAAGGAGGATGAAGATTCTCAACTTATTCGGC
AGCGATTCCAGTCCATTCCTATTTTCAATAAAGGCAACTCGTACACCAGT
TCAAACCTCATGTTTGGTAAGCTGGACGACATTGAAATCTGGATATGCGA
TTATACCTACTGGGGGCATGTAAAACAAATGCATGCGGACAATGAGACAA
GTGTTAGCTCCTCTCAAAAGCAAAGACAAACATTAATCTGTTTACAGTTT
CCTGATGCGGATTGGCCAACCTTCGATATTACTTTGAACCTTGGGACTGC
CAAACTCTCTGAATACAGTTCAAAAAATACTATTGTACCTACCACAGATG
ATGCATTCTTCAAAAGGTATAGCGTATGTTCATCGATAGAATCTGATCAA
ACAGCGGTAGCCAATTTGATTACTAAAGAAGTGCAGGCTTTATTTCCAGC
AGATAAAAAACTTAAAGTCCAGGTGAGTAAAAATGAAATGTTACTCACGA
ATTACAGCTTGCAGATTAAGACTACCGAATTGGAGAGCTACATCAATGTG
GCCTTC
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