mRNA_M-pyrifera_M_contig76971.18140.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76971.18140.1
Unique NamemRNA_M-pyrifera_M_contig76971.18140.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76971.18140.1 vs. uniprot
Match: A0A6H5HZ97_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5HZ97_9HYME)

HSP 1 Score: 63.5 bits (153), Expect = 6.040e-9
Identity = 48/136 (35.29%), Postives = 71/136 (52.21%), Query Frame = 1
Query:   28 VNNESRDTSSNALL-MAVQAGKE-ASAMLLLENGANAAQKNSYGATALHVACY-KGMASVVAHFINSHQSDPGLLQAALMAADGEGSTCLHEAARKGRKGIVQMLLNCGVDKSVKDRHGKSPADVACDKG-VRELL 423
            V  +++D   N  L + ++ GK+   A+ LL+NGAN    N+ G+TALHVAC  K  A      I  H ++       + A DG G T LH A + G   + ++LL CG D  + ++HG +   V C +  VR LL
Sbjct:  485 VRIDAQDKCGNTPLHVIIKKGKKYREAVFLLKNGANPNVANADGSTALHVACKDKNDAHGSFRAIMKHSAER-YRPLRVDAQDGNGDTPLHLALKNGLGEVAELLLRCGADPGLANKHGSTALHVVCQQEQVRSLL 619          
BLAST of mRNA_M-pyrifera_M_contig76971.18140.1 vs. uniprot
Match: A0A6H5HVD7_9HYME (Uncharacterized protein n=2 Tax=Trichogramma TaxID=7490 RepID=A0A6H5HVD7_9HYME)

HSP 1 Score: 62.0 bits (149), Expect = 2.010e-8
Identity = 39/115 (33.91%), Postives = 58/115 (50.43%), Query Frame = 1
Query:  100 AMLLLENGANAAQKNSYGATALHVAC------YKGMASVVAHFINSHQSDPGLLQAALMAADGEGSTCLHEAARKGRKGIVQMLLNCGVDKSVKDRHGKSPADVACDKG-VRELL 423
            A+ LL+NGAN    N+ G TALHVAC      +    +++ H    ++         + A DG G T LH A + G   + ++LL CG D  + ++HG +   V C +  VR LL
Sbjct:  262 AVFLLKNGANPYVANADGTTALHVACKDKDDAHGSFRAIIKHSAVRYRP------LRVNAQDGNGDTPLHLALKNGLGEVAELLLRCGADPGLANKHGSTALHVVCQQEQVRSLL 370          
BLAST of mRNA_M-pyrifera_M_contig76971.18140.1 vs. uniprot
Match: A0A315DXC9_9BURK (Uncharacterized protein n=1 Tax=Limnohabitans sp. 2KL-1 TaxID=1100699 RepID=A0A315DXC9_9BURK)

HSP 1 Score: 58.9 bits (141), Expect = 2.530e-7
Identity = 40/123 (32.52%), Postives = 66/123 (53.66%), Query Frame = 1
Query:   55 SNALLMAVQAGKEASAMLLLENGANAAQKNSYGATALHVACYKGMASVVAHFINSHQSDPGLLQAALMAADGEGSTCLHEAARKGRKGIVQMLLNCGVDKSVKDRHGKSPADVACDKGVRELL 423
            + ALL A+   +E  A+ L++  AN   + + G TALH+A   G+  VV   ++ H          +   D    T L  AAR+G + I+Q LL+   DKS+K++ GKS A++A + G  +++
Sbjct: 1397 TTALLTAIAEKREDCAIALIKAEANLHTRTTGGQTALHLAAAMGLERVVEVCLDRHSD-------LVNTVDENFETPLMLAAREGYESIIQSLLSFAPDKSMKNKIGKSAANIAQENGYIDIV 1512          
BLAST of mRNA_M-pyrifera_M_contig76971.18140.1 vs. uniprot
Match: A0A3M7QCX9_BRAPC (Transient receptor potential cation channel subfamily A member 1 n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7QCX9_BRAPC)

HSP 1 Score: 58.5 bits (140), Expect = 3.090e-7
Identity = 33/94 (35.11%), Postives = 48/94 (51.06%), Query Frame = 1
Query:  139 KNSYGATALHVACYKGMASVVAHFINSHQSDPGLLQAALMAADGEGSTCLHEAARKGRKGIVQMLLNCGVDKSVKDRHGKSPADVACDKGVREL 420
            KN  G T  H+AC KG  ++V +F+   +    L+Q  L   D   +T LH A   G  GI  +LL  G+D SVK+    +  D++C  G  E+
Sbjct:  363 KNYLGHTCFHIACIKGYYNIVEYFLKEKK----LIQF-LEHVDNNFNTSLHLATENGHSGIANLLLEFGIDPSVKNEENTTALDLSCRLGYFEI 451          
BLAST of mRNA_M-pyrifera_M_contig76971.18140.1 vs. uniprot
Match: UPI0019C86A31 (Ankyrin repeat domain-containing protein n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=UPI0019C86A31)

HSP 1 Score: 55.5 bits (132), Expect = 1.380e-6
Identity = 44/144 (30.56%), Postives = 73/144 (50.69%), Query Frame = 1
Query:   16 LTKYVNNESRDTSS------NALLMAVQAGKEASAMLLLENGAN--AAQKNSYGATALHVACY-KGMASVVAHFINSHQSDPGLLQAALMAADGEGSTCLHEAARKGRKGIVQMLLNCGVDKSVKDRHGKSPADVACDKGVREL 420
            + ++V + S D  +       AL +A   G  +  ++LL  GAN  A+  N+ G TALH A   +   +V+A  + +  S           AD +G T LH AA +G +   ++LL CG ++  +   GKSP+D+A ++G  +L
Sbjct:   53 VARHVTHTSADLQAYSGDGWTALHLAAFFGYASVVVVLLRAGANHSASSHNAQGNTALHAALAGRCEMTVIAALLAAGSS--------AAVADIQGYTPLHLAASRGDRAASELLLACGAERDARTPDGKSPSDIALERGHVDL 188          
BLAST of mRNA_M-pyrifera_M_contig76971.18140.1 vs. uniprot
Match: A0A821BFQ5_9BILA (NAD(P)(+)--arginine ADP-ribosyltransferase n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A821BFQ5_9BILA)

HSP 1 Score: 55.1 bits (131), Expect = 4.900e-6
Identity = 23/50 (46.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:  274 GSTCLHEAARKGRKGIVQMLLNCGVDKSVKDRHGKSPADVACDKGVRELL 423
            GST LH AA  G K IV+MLL+ G  +++K++HG +PA+   D+G++++L
Sbjct:   54 GSTALHAAAYYGHKEIVKMLLSKGAKRTIKNKHGLTPAEEGKDEGIKKML 103          
BLAST of mRNA_M-pyrifera_M_contig76971.18140.1 vs. uniprot
Match: A0A0G4GWH4_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GWH4_VITBC)

HSP 1 Score: 55.1 bits (131), Expect = 5.090e-6
Identity = 41/136 (30.15%), Postives = 66/136 (48.53%), Query Frame = 1
Query:   16 LTKYVNNESRDTSSNALLMAVQAGKEASAMLLLENGANAAQKNSYGATALHVACYKGMASVVAHFINS---HQSDPGLLQAALMAADGEGSTCLHEAARKGRKG--IVQMLLNCGVDKSVKDRHGKSPADVACDKG 408
            ++K    E  D +   +    + G + + +L  + G  A  K+    T LH+AC KG    V   +++    QS  GL  A     +  G +CLH AAR GR+G  +V +L+  G D   +D+ GK+P   A ++G
Sbjct:  241 ISKIDIEERTDAAWQEMAARGETGTDLTQLLSRQTGVFARDKSLN--TPLHLACAKGHLETVEWLLDNTEGSQSSSGL-PALTNLRNAAGESCLHLAARAGRRGRKVVDLLIRRGADLESRDKKGKTPLQAAVEEG 373          
BLAST of mRNA_M-pyrifera_M_contig76971.18140.1 vs. uniprot
Match: A0A1F7FF12_9BACT (Uncharacterized protein n=1 Tax=Candidatus Riflebacteria bacterium GWC2_50_8 TaxID=1817874 RepID=A0A1F7FF12_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 9.420e-6
Identity = 40/132 (30.30%), Postives = 60/132 (45.45%), Query Frame = 1
Query:   10 VLLTKYVNNESRDTSSNALLMAVQAGKEASAMLLLENGANAAQKNSYGATALHVACYKGMASVVAHFINSHQSDPGLLQAALMAADGEGSTCLHEAARKGRKGIVQMLLNCGVDKSVKDRHGKSPADVACDK 405
            +L  K + NE        LL+AV     A A LLLE GA  AQ ++ G TA+H+A  +    +V + +N + +D       L   +  G T LH A       I  +L+N G   + KD  G +   + C +
Sbjct:  250 LLNEKNLLNEINTAGLTPLLLAVNTDNNAVASLLLEAGAELAQTDTRGNTAMHLASQRNNRKLVEYLLNHNNTD-------LDPVNHLGQTPLHVAIETLNPQIAGILINAGASLNRKDSRGNNLLHMICQR 374          
BLAST of mRNA_M-pyrifera_M_contig76971.18140.1 vs. uniprot
Match: UPI0012D3ECCA (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like n=1 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D3ECCA)

HSP 1 Score: 53.5 bits (127), Expect = 1.830e-5
Identity = 36/117 (30.77%), Postives = 58/117 (49.57%), Query Frame = 1
Query:   58 NALLMAVQAGKEASAMLLLENGANAAQKNSYGATALHVACYKGMASVVAHFINSHQSDPGLLQAALMAADGEGSTCLHEAARKGRKGIVQMLLNCGVDKSVKDRHGKSPADVACDKG 408
            +AL  A  A KE    LLL++GA+A   ++ G +  H+   KG+   +   +++           L   D  G T LH A    +   V++L+  G D ++K + GK+P D+A DKG
Sbjct:  282 SALHSASYAMKEDIVKLLLDHGAHANAMDAEGLSPFHIMASKGLNHAIRKVLDNW------FNINLKTTDANGWTPLHCAVVANQSDTVKLLIFRGADVNIKSKDGKTPKDIATDKG 392          
BLAST of mRNA_M-pyrifera_M_contig76971.18140.1 vs. uniprot
Match: A0A804QXT1_MAIZE (MSP domain-containing protein n=5 Tax=Andropogoneae TaxID=147429 RepID=A0A804QXT1_MAIZE)

HSP 1 Score: 53.1 bits (126), Expect = 2.180e-5
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 1
Query:  250 ALMAADGEGSTCLHEAARKGRKGIVQMLLNCGVDKSVKDRHGKSPADVACDKGVRELL 423
            AL A D EG T LH  A  G    V +L++ G D S  D  G++P DVA DKG +E++
Sbjct:  206 ALAARDREGRTVLHAVAAAGEAEAVAVLVDMGADTSAVDARGRTPLDVARDKGYQEVV 263          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76971.18140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5HZ97_9HYME6.040e-935.29Uncharacterized protein (Fragment) n=1 Tax=Trichog... [more]
A0A6H5HVD7_9HYME2.010e-833.91Uncharacterized protein n=2 Tax=Trichogramma TaxID... [more]
A0A315DXC9_9BURK2.530e-732.52Uncharacterized protein n=1 Tax=Limnohabitans sp. ... [more]
A0A3M7QCX9_BRAPC3.090e-735.11Transient receptor potential cation channel subfam... [more]
UPI0019C86A311.380e-630.56Ankyrin repeat domain-containing protein n=1 Tax=G... [more]
A0A821BFQ5_9BILA4.900e-646.00NAD(P)(+)--arginine ADP-ribosyltransferase n=1 Tax... [more]
A0A0G4GWH4_VITBC5.090e-630.15Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A1F7FF12_9BACT9.420e-630.30Uncharacterized protein n=1 Tax=Candidatus Rifleba... [more]
UPI0012D3ECCA1.830e-530.77serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A804QXT1_MAIZE2.180e-544.83MSP domain-containing protein n=5 Tax=Andropogonea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76971contigM-pyrifera_M_contig76971:415..846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816669.7983196-CDS-M-pyrifera_M_contig76971:414..8461622816669.7983196-CDS-M-pyrifera_M_contig76971:414..846Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76971 415..846 +
1692278109.3048878-CDS-M-pyrifera_M_contig76971:414..8461692278109.3048878-CDS-M-pyrifera_M_contig76971:414..846Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76971 415..846 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76971.18140.1prot_M-pyrifera_M_contig76971.18140.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76971 415..846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76971.18140.1

>prot_M-pyrifera_M_contig76971.18140.1 ID=prot_M-pyrifera_M_contig76971.18140.1|Name=mRNA_M-pyrifera_M_contig76971.18140.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
ERGVLLTKYVNNESRDTSSNALLMAVQAGKEASAMLLLENGANAAQKNSY
GATALHVACYKGMASVVAHFINSHQSDPGLLQAALMAADGEGSTCLHEAA
RKGRKGIVQMLLNCGVDKSVKDRHGKSPADVACDKGVRELLAC*
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mRNA from alignment at M-pyrifera_M_contig76971:415..846+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76971.18140.1 ID=mRNA_M-pyrifera_M_contig76971.18140.1|Name=mRNA_M-pyrifera_M_contig76971.18140.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig76971:415..846+ (Macrocystis pyrifera P11B4 male)
GAGAGAGGTGTGCTGCTCACGAAGTACGTGAACAACGAGAGCCGCGACAC CTCCTCCAATGCCCTCCTCATGGCTGTGCAGGCGGGGAAGGAGGCGAGCG CGATGCTATTGCTCGAGAACGGAGCCAATGCAGCACAGAAGAACTCCTAC GGCGCCACTGCACTGCATGTGGCATGCTACAAGGGAATGGCCTCCGTTGT GGCCCACTTCATCAACTCACACCAGAGCGACCCAGGACTCCTGCAGGCAG CCTTGATGGCAGCAGACGGCGAAGGGAGCACTTGTCTGCACGAGGCAGCC AGGAAGGGCCGCAAGGGCATTGTGCAGATGCTCCTCAACTGTGGAGTGGA CAAGAGCGTGAAGGATCGCCACGGCAAGTCACCTGCCGACGTGGCGTGTG ACAAGGGGGTCAGAGAGCTCCTTGCGTGTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76971:415..846+

>mRNA_M-pyrifera_M_contig76971.18140.1 ID=mRNA_M-pyrifera_M_contig76971.18140.1|Name=mRNA_M-pyrifera_M_contig76971.18140.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig76971:415..846+ (Macrocystis pyrifera P11B4 male)
GAGAGAGGTGTGCTGCTCACGAAGTACGTGAACAACGAGAGCCGCGACAC
CTCCTCCAATGCCCTCCTCATGGCTGTGCAGGCGGGGAAGGAGGCGAGCG
CGATGCTATTGCTCGAGAACGGAGCCAATGCAGCACAGAAGAACTCCTAC
GGCGCCACTGCACTGCATGTGGCATGCTACAAGGGAATGGCCTCCGTTGT
GGCCCACTTCATCAACTCACACCAGAGCGACCCAGGACTCCTGCAGGCAG
CCTTGATGGCAGCAGACGGCGAAGGGAGCACTTGTCTGCACGAGGCAGCC
AGGAAGGGCCGCAAGGGCATTGTGCAGATGCTCCTCAACTGTGGAGTGGA
CAAGAGCGTGAAGGATCGCCACGGCAAGTCACCTGCCGACGTGGCGTGTG
ACAAGGGGGTCAGAGAGCTCCTTGCGTGTTAGGAGAGAGGTGTGCTGCTC
ACGAAGTACGTGAACAACGAGAGCCGCGACACCTCCTCCAATGCCCTCCT
CATGGCTGTGCAGGCGGGGAAGGAGGCGAGCGCGATGCTATTGCTCGAGA
ACGGAGCCAATGCAGCACAGAAGAACTCCTACGGCGCCACTGCACTGCAT
GTGGCATGCTACAAGGGAATGGCCTCCGTTGTGGCCCACTTCATCAACTC
ACACCAGAGCGACCCAGGACTCCTGCAGGCAGCCTTGATGGCAGCAGACG
GCGAAGGGAGCACTTGTCTGCACGAGGCAGCCAGGAAGGGCCGCAAGGGC
ATTGTGCAGATGCTCCTCAACTGTGGAGTGGACAAGAGCGTGAAGGATCG
CCACGGCAAGTCACCTGCCGACGTGGCGTGTGACAAGGGGGTCAGAGAGC
TCCTTGCGTGTTAG
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