mRNA_M-pyrifera_M_contig7696.18138.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7696.18138.1
Unique NamemRNA_M-pyrifera_M_contig7696.18138.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7696.18138.1 vs. uniprot
Match: D7FVV8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVV8_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 2.970e-81
Identity = 174/306 (56.86%), Postives = 211/306 (68.95%), Query Frame = 1 
Query:    1 MRRRIAIVVTETMKDRLAGSEEKGQGKGAAGSSVARGKQDASTAAYLKAFQAAVASKVESMCDVQDAREKLEAEDLMNDIERFGDDMRTARERLRATRARVTRLSASVCNDSLRAAEAEDDRACEVLEANAEHARREREAGMPLPTAGGEGSXXXXXXXXXXXG------------FSGIDGDVLEPKVSLLIGKLSELPGPLKAVLQEIPELTASLAKTVRSVEAAMGAGQSRTEALLGKSPPAPISAVRADGGGKPSAGG-------EGRPPEEARASAREARVEQARKEWEAAGVGTFGGIFS 861
            MR R++ VV ET K  LAG +       +AG +V    QDA+T AYL+AFQAAVA KV  +C+VQDARE  E ++L+ +I +F  D+R AR RL ATRARV RLSA  C D+LR +EA DDRAC VLEA+  HARRE E G PLP    + +XXXXXXXXXXX             F G++  V+EPKVS LIGK++ELPGPLK+VLQEIPELTASLA +V+  EAA+ AGQSRTEALLGK+PP P+S+ +  G               E  PPE+ARA+AREARV+QARKEWEA GVG  GGIF+
Sbjct:    1 MRYRVSTVVDETTKKSLAGKKS----GSSAGVAVVAPAQDAATTAYLRAFQAAVADKVRDLCEVQDARESREEDELVGEIFQFSHDLRAARSRLYATRARVARLSADTCRDALRVSEAADDRACAVLEASTAHARRESETGGPLPLRIDDAAXXXXXXXXXXXXXXXXXXXXXXGIFQGLETGVVEPKVSALIGKMAELPGPLKSVLQEIPELTASLAVSVQEAEAAIKAGQSRTEALLGKAPPTPLSSKKGKGAXXXXXXXXANVVEDERYPPEDARAAAREARVQQARKEWEAIGVGVVGGIFN 302
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7696.18138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVV8_ECTSI2.970e-8156.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7696contigM-pyrifera_M_contig7696:1233..2096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002320.1
Exons1
Model size864
Cds size864
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816669.7111034-CDS-M-pyrifera_M_contig7696:1232..20961622816669.7111034-CDS-M-pyrifera_M_contig7696:1232..2096Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7696 1233..2096 +
1692278109.2695987-CDS-M-pyrifera_M_contig7696:1232..20961692278109.2695987-CDS-M-pyrifera_M_contig7696:1232..2096Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7696 1233..2096 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7696.18138.1prot_M-pyrifera_M_contig7696.18138.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7696 1233..2096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7696.18138.1

>prot_M-pyrifera_M_contig7696.18138.1 ID=prot_M-pyrifera_M_contig7696.18138.1|Name=mRNA_M-pyrifera_M_contig7696.18138.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=288bp
MRRRIAIVVTETMKDRLAGSEEKGQGKGAAGSSVARGKQDASTAAYLKAF
QAAVASKVESMCDVQDAREKLEAEDLMNDIERFGDDMRTARERLRATRAR
VTRLSASVCNDSLRAAEAEDDRACEVLEANAEHARREREAGMPLPTAGGE
GSAGGDGTGEGDGGFSGIDGDVLEPKVSLLIGKLSELPGPLKAVLQEIPE
LTASLAKTVRSVEAAMGAGQSRTEALLGKSPPAPISAVRADGGGKPSAGG
EGRPPEEARASAREARVEQARKEWEAAGVGTFGGIFS*
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mRNA from alignment at M-pyrifera_M_contig7696:1233..2096+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7696.18138.1 ID=mRNA_M-pyrifera_M_contig7696.18138.1|Name=mRNA_M-pyrifera_M_contig7696.18138.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig7696:1233..2096+ (Macrocystis pyrifera P11B4 male)
ATGCGCCGTAGGATAGCCATCGTGGTGACGGAGACCATGAAGGATAGGTT
GGCTGGGTCGGAGGAGAAGGGACAGGGCAAGGGTGCTGCAGGCAGCAGCG
TGGCGAGAGGGAAGCAAGATGCATCAACAGCGGCCTACCTGAAAGCGTTC
CAGGCCGCCGTTGCCTCCAAAGTGGAGTCCATGTGCGACGTCCAGGACGC
CCGCGAGAAGCTCGAGGCGGAAGACCTCATGAACGACATCGAGCGTTTCG
GCGACGACATGCGGACCGCGAGGGAGAGGCTACGCGCCACCCGCGCGCGT
GTCACCCGGCTCTCCGCCTCCGTCTGCAACGACTCTCTGCGGGCTGCGGA
AGCCGAGGACGACCGCGCCTGCGAGGTCCTCGAGGCGAACGCGGAGCACG
CCCGGAGAGAGAGGGAGGCGGGCATGCCGTTGCCGACAGCAGGGGGCGAA
GGAAGCGCTGGAGGAGACGGCACTGGCGAAGGCGATGGCGGATTCTCCGG
AATCGATGGTGACGTACTCGAGCCCAAGGTGTCCCTATTGATAGGCAAGC
TCTCGGAGCTGCCGGGCCCGCTGAAGGCCGTGCTGCAGGAGATCCCTGAG
CTGACGGCGTCGCTGGCGAAGACCGTACGGTCGGTGGAGGCGGCGATGGG
GGCCGGGCAGAGTCGCACGGAGGCGTTACTGGGAAAGTCGCCGCCGGCGC
CGATCTCCGCGGTCAGAGCAGATGGCGGGGGAAAGCCGAGCGCGGGGGGT
GAGGGACGTCCGCCCGAGGAGGCGCGCGCGAGCGCGCGGGAGGCTCGCGT
GGAGCAGGCGAGGAAGGAGTGGGAGGCGGCGGGCGTGGGCACTTTCGGGG
GCATTTTCAGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7696:1233..2096+

>mRNA_M-pyrifera_M_contig7696.18138.1 ID=mRNA_M-pyrifera_M_contig7696.18138.1|Name=mRNA_M-pyrifera_M_contig7696.18138.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1728bp|location=Sequence derived from alignment at M-pyrifera_M_contig7696:1233..2096+ (Macrocystis pyrifera P11B4 male)
ATGCGCCGTAGGATAGCCATCGTGGTGACGGAGACCATGAAGGATAGGTT
GGCTGGGTCGGAGGAGAAGGGACAGGGCAAGGGTGCTGCAGGCAGCAGCG
TGGCGAGAGGGAAGCAAGATGCATCAACAGCGGCCTACCTGAAAGCGTTC
CAGGCCGCCGTTGCCTCCAAAGTGGAGTCCATGTGCGACGTCCAGGACGC
CCGCGAGAAGCTCGAGGCGGAAGACCTCATGAACGACATCGAGCGTTTCG
GCGACGACATGCGGACCGCGAGGGAGAGGCTACGCGCCACCCGCGCGCGT
GTCACCCGGCTCTCCGCCTCCGTCTGCAACGACTCTCTGCGGGCTGCGGA
AGCCGAGGACGACCGCGCCTGCGAGGTCCTCGAGGCGAACGCGGAGCACG
CCCGGAGAGAGAGGGAGGCGGGCATGCCGTTGCCGACAGCAGGGGGCGAA
GGAAGCGCTGGAGGAGACGGCACTGGCGAAGGCGATGGCGGATTCTCCGG
AATCGATGGTGACGTACTCGAGCCCAAGGTGTCCCTATTGATAGGCAAGC
TCTCGGAGCTGCCGGGCCCGCTGAAGGCCGTGCTGCAGGAGATCCCTGAG
CTGACGGCGTCGCTGGCGAAGACCGTACGGTCGGTGGAGGCGGCGATGGG
GGCCGGGCAGAGTCGCACGGAGGCGTTACTGGGAAAGTCGCCGCCGGCGC
CGATCTCCGCGGTCAGAGCAGATGGCGGGGGAAAGCCGAGCGCGGGGGGT
GAGGGACGTCCGCCCGAGGAGGCGCGCGCGAGCGCGCGGGAGGCTCGCGT
GGAGCAGGCGAGGAAGGAGTGGGAGGCGGCGGGCGTGGGCACTTTCGGGG
GCATTTTCAGCTGAATGCGCCGTAGGATAGCCATCGTGGTGACGGAGACC
ATGAAGGATAGGTTGGCTGGGTCGGAGGAGAAGGGACAGGGCAAGGGTGC
TGCAGGCAGCAGCGTGGCGAGAGGGAAGCAAGATGCATCAACAGCGGCCT
ACCTGAAAGCGTTCCAGGCCGCCGTTGCCTCCAAAGTGGAGTCCATGTGC
GACGTCCAGGACGCCCGCGAGAAGCTCGAGGCGGAAGACCTCATGAACGA
CATCGAGCGTTTCGGCGACGACATGCGGACCGCGAGGGAGAGGCTACGCG
CCACCCGCGCGCGTGTCACCCGGCTCTCCGCCTCCGTCTGCAACGACTCT
CTGCGGGCTGCGGAAGCCGAGGACGACCGCGCCTGCGAGGTCCTCGAGGC
GAACGCGGAGCACGCCCGGAGAGAGAGGGAGGCGGGCATGCCGTTGCCGA
CAGCAGGGGGCGAAGGAAGCGCTGGAGGAGACGGCACTGGCGAAGGCGAT
GGCGGATTCTCCGGAATCGATGGTGACGTACTCGAGCCCAAGGTGTCCCT
ATTGATAGGCAAGCTCTCGGAGCTGCCGGGCCCGCTGAAGGCCGTGCTGC
AGGAGATCCCTGAGCTGACGGCGTCGCTGGCGAAGACCGTACGGTCGGTG
GAGGCGGCGATGGGGGCCGGGCAGAGTCGCACGGAGGCGTTACTGGGAAA
GTCGCCGCCGGCGCCGATCTCCGCGGTCAGAGCAGATGGCGGGGGAAAGC
CGAGCGCGGGGGGTGAGGGACGTCCGCCCGAGGAGGCGCGCGCGAGCGCG
CGGGAGGCTCGCGTGGAGCAGGCGAGGAAGGAGTGGGAGGCGGCGGGCGT
GGGCACTTTCGGGGGCATTTTCAGCTGA
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