mRNA_M-pyrifera_M_contig7695.18137.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7695.18137.1
Unique NamemRNA_M-pyrifera_M_contig7695.18137.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7695.18137.1 vs. uniprot
Match: D7FP69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP69_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 1.720e-30
Identity = 61/73 (83.56%), Postives = 67/73 (91.78%), Query Frame = 2 
Query:    2 GYSKSDIILGLVFRAKSLSLSVAGIQKVSAVGVENVDLSPIVGSNHFNYNRRMPEILSLLALDDCSKYIARGD 220
            GYSKSD+I+GLVFRAKSLSLSV+GIQKVSAVGVENVDLS +VGSNHFNYNR+MPEIL LL LD+ S YI RGD
Sbjct:  864 GYSKSDVIIGLVFRAKSLSLSVSGIQKVSAVGVENVDLSSVVGSNHFNYNRKMPEILELLDLDNTSTYIGRGD 936
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BLAST of mRNA_M-pyrifera_M_contig7695.18137.1 vs. uniprot
Match: A0A835Z4D9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D9_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 5.620e-15
Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 2 
Query:    2 GYSKSDIILGLVFRAKSLSLSVAGIQKVSAVGVENVDLSPIVGSNHFNYNRRMPEILSLLALDDCSKYIARGDR 223
            GY K D ILGL++R + LS+SVAG+Q +++  VEN DLSP + S H  Y  R+PEI++LL LDDC +Y ARG R
Sbjct:  183 GYFKKDGILGLIYRIRRLSVSVAGLQPIASRAVENADLSPAL-SQHMQYCSRVPEIMALLQLDDCRRY-ARGAR 254
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BLAST of mRNA_M-pyrifera_M_contig7695.18137.1 vs. uniprot
Match: A0A0G4HYN8_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HYN8_9ALVE)

HSP 1 Score: 56.2 bits (134), Expect = 7.360e-7
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:    5 YSKSDIILGLVFRAKSLSLSVAGIQKVSAVGVENVDLSPIVGSNHFNYNRRMPEILSLLAL 187
            YS++D +LG ++R     + VAG+ KV   GVEN DL+  V S H  Y +R+PEIL+L+AL
Sbjct: 1240 YSRTDWVLGFLYRYMEWGIKVAGLTKVDVAGVENFDLTGFVRS-HSGYPQRIPEILTLVAL 1299
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BLAST of mRNA_M-pyrifera_M_contig7695.18137.1 vs. uniprot
Match: A0A2P4Y8C6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y8C6_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.720e-6
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 2 
Query:    2 GYSKSDIILGLVFRAKSLSLSVAGIQKVSAVGVENVDLSPIVGSNHFNYNRRMPEILSLLALD 190
            GYS  D +LG+++R +  SL+ AGI  +   GVENVDLS I+G  H  Y  ++  I+ LL L+
Sbjct:  151 GYSDKDWMLGVMYRYQGWSLNSAGIAPIDIAGVENVDLSEIIGG-HLEYKSKIGAIMDLLELE 212
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BLAST of mRNA_M-pyrifera_M_contig7695.18137.1 vs. uniprot
Match: A0A225X3U7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X3U7_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.300e-6
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 2 
Query:    2 GYSKSDIILGLVFRAKSLSLSVAGIQKVSAVGVENVDLSPIVGSNHFNYNRRMPEILSLLALD 190
            GYS  D +LG+++R +  SL+ AGI  +   GVENVDLS I+G  H  Y  ++  I+ LL L+
Sbjct:  536 GYSDKDWMLGVMYRYQGWSLNSAGIAPIDIAGVENVDLSEIIGG-HLEYKSKIGAIMDLLELE 597
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BLAST of mRNA_M-pyrifera_M_contig7695.18137.1 vs. uniprot
Match: A0A3R7IQF8_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7IQF8_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.460e-6
Identity = 27/63 (42.86%), Postives = 41/63 (65.08%), Query Frame = 2 
Query:    2 GYSKSDIILGLVFRAKSLSLSVAGIQKVSAVGVENVDLSPIVGSNHFNYNRRMPEILSLLALD 190
            GYS+ D +LG+++R +  +L+ AGI  +   GVENVDLS I+G  H  Y  ++  I+ LL L+
Sbjct:  480 GYSEKDWMLGVMYRYQGWALNSAGIAPIDIAGVENVDLSEIIGG-HLEYKSKIGAIMDLLQLE 541
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BLAST of mRNA_M-pyrifera_M_contig7695.18137.1 vs. uniprot
Match: UPI0015C2D4DF (Protein of unknown function (DUF726) n=1 Tax=Geosmithia morbida TaxID=1094350 RepID=UPI0015C2D4DF)

HSP 1 Score: 53.9 bits (128), Expect = 4.650e-6
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 2 
Query:    5 YSKSDIILGLVFRAKSLSLSVAGIQKVSAV-GVENVDLSPIVGSNHFNYNRRMPEIL 172
            YS++D+ILGLV+RA S+S+ VAG+Q +  V GVEN+DLS  V S H  Y     EIL
Sbjct:  603 YSENDMILGLVYRAYSMSMGVAGLQPIRGVDGVENLDLSACV-SGHMRYPELTGEIL 658
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BLAST of mRNA_M-pyrifera_M_contig7695.18137.1 vs. uniprot
Match: D0NN16_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=D0NN16_PHYIT)

HSP 1 Score: 53.5 bits (127), Expect = 6.030e-6
Identity = 27/63 (42.86%), Postives = 41/63 (65.08%), Query Frame = 2 
Query:    2 GYSKSDIILGLVFRAKSLSLSVAGIQKVSAVGVENVDLSPIVGSNHFNYNRRMPEILSLLALD 190
            GYS+ D +LG+++R +  +L+ AGI  +   GVENVDLS I+G  H  Y  ++  I+ LL L+
Sbjct:  437 GYSEKDWMLGVMYRYQGWALNSAGIAPIDIAGVENVDLSEIIGG-HLEYKSKIGAIVDLLQLE 498
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BLAST of mRNA_M-pyrifera_M_contig7695.18137.1 vs. uniprot
Match: A0A0P1AGM3_PLAHL (Uncharacterized conserved protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AGM3_PLAHL)

HSP 1 Score: 53.5 bits (127), Expect = 6.210e-6
Identity = 26/63 (41.27%), Postives = 41/63 (65.08%), Query Frame = 2 
Query:    2 GYSKSDIILGLVFRAKSLSLSVAGIQKVSAVGVENVDLSPIVGSNHFNYNRRMPEILSLLALD 190
            GYS+ D +LG+++R +  +L+ AGI  +   G+ENVDLS I+G  H  Y  ++  I+ LL L+
Sbjct:  595 GYSEKDWMLGVMYRYQGWALNSAGIAPIDIAGIENVDLSEIIGG-HLEYKSKIGAIMDLLQLE 656
[Close]
BLAST of mRNA_M-pyrifera_M_contig7695.18137.1 vs. uniprot
Match: A0A3R8CUC3_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R8CUC3_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 6.220e-6
Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = 2 
Query:    2 GYSKSDIILGLVFRAKSLSLSVAGIQKVSAVGVENVDLSPIVGSNHFNYNRRMPEILSLLALD 190
            GYS++D +LG+++R    +L+ AG+  +  VGVENV+LS I+G  H  Y  ++  I+ LL LD
Sbjct:  601 GYSENDWMLGVMYRYHGWTLNSAGVAPLDIVGVENVNLSEIIGG-HLEYKSKIGAIMDLLQLD 662
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7695.18137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FP69_ECTSI1.720e-3083.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z4D9_9STRA5.620e-1555.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4HYN8_9ALVE7.360e-747.54Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A2P4Y8C6_9STRA1.720e-644.44Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A225X3U7_9STRA3.300e-644.44Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A3R7IQF8_9STRA4.460e-642.86Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
UPI0015C2D4DF4.650e-654.39Protein of unknown function (DUF726) n=1 Tax=Geosm... [more]
D0NN16_PHYIT6.030e-642.86Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A0P1AGM3_PLAHL6.210e-641.27Uncharacterized conserved protein n=1 Tax=Plasmopa... [more]
A0A3R8CUC3_9STRA6.220e-642.86Uncharacterized protein n=2 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7695contigM-pyrifera_M_contig7695:6724..7691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size331
Cds size291
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7695.18137.1prot_M-pyrifera_M_contig7695.18137.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7695 6724..7651 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816669.6427262-CDS-M-pyrifera_M_contig7695:6723..68051622816669.6427262-CDS-M-pyrifera_M_contig7695:6723..6805Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7695 6724..6805 +
1692278109.2203271-CDS-M-pyrifera_M_contig7695:6723..68051692278109.2203271-CDS-M-pyrifera_M_contig7695:6723..6805Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7695 6724..6805 +
1622816669.657246-CDS-M-pyrifera_M_contig7695:7442..76511622816669.657246-CDS-M-pyrifera_M_contig7695:7442..7651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7695 7443..7651 +
1692278109.2390664-CDS-M-pyrifera_M_contig7695:7442..76511692278109.2390664-CDS-M-pyrifera_M_contig7695:7442..7651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7695 7443..7651 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816669.6753006-UTR-M-pyrifera_M_contig7695:7651..76911622816669.6753006-UTR-M-pyrifera_M_contig7695:7651..7691Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7695 7652..7691 +
1692278109.252752-UTR-M-pyrifera_M_contig7695:7651..76911692278109.252752-UTR-M-pyrifera_M_contig7695:7651..7691Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7695 7652..7691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7695.18137.1

>prot_M-pyrifera_M_contig7695.18137.1 ID=prot_M-pyrifera_M_contig7695.18137.1|Name=mRNA_M-pyrifera_M_contig7695.18137.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
RVLQVGHHPGPGFPSEEPVAFGRRDPEGVCGGRGKRGPITHSGFEPLQLQ
PTNARDTLFASARRLLQVHRPGRPTGSRLFDATFSFNFKCKHGGPD*
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mRNA from alignment at M-pyrifera_M_contig7695:6724..7691+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7695.18137.1 ID=mRNA_M-pyrifera_M_contig7695.18137.1|Name=mRNA_M-pyrifera_M_contig7695.18137.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=968bp|location=Sequence derived from alignment at M-pyrifera_M_contig7695:6724..7691+ (Macrocystis pyrifera P11B4 male)
CGGGTACTCCAAGTCGGACATCATCCTGGGCCTGGTTTTCCGAGCGAAGA
GCCTGTCGCTTTCGGTCGCAGGGATCCAGAAGGTGTGTCAGACATGACCT
CGTATATTTCGTGTGTGTTTCTTCATGTTTTGAGTTTTGGGGGGGGGGGT
GTTTGCGTTTCAGACATGGCTATAATATAAGGCGTGCGTGTTGTTTGTTA
GTGAAATCGATGTTTTTGGTGTTGTGTTTGTTGATGATGCCATTGCCGAT
GCTCGTACGCTTTGTGTTCGTGTGTGTTTTCATTTTGTTTGTTTTCTTGA
CATTGATGTTGTTGTGGTTTGCTGTTGTCGTTGTGCCCGTTGCCGTTGCT
GCCGCTGCCACTTTTGCAGTGTTTATTGCCCTGACGCGCAGGGGTTCACA
CGCGACATGTGCCGCGAGTGTCCCTAGAGAAACACAGCTTACAACTTATT
TTTTCGGAGCCTTTTTGTTTTCTTTATTTTGATTTGTATTATCAAGATCA
TTACGACTCCCGCACGAACACAGCTTAGGTGGCCCTTTTTTTTTCGTGCT
CGCATACACGACCCGATTTATTTTTCGCGTTTTATTCAAGGAGCTCATTA
GGTTCTCAGATAACCTCCTTTTCGTTGCTGCTGCTGTTGCTGCTGCTGCT
GTCCTCGTGGTGGTGTTATTATTCTCCGTGTTGGTTGGTGGTGGTGGTGG
CCGTGGTTGCGGGGAGCAGGTGTCTGCGGTGGGCGTGGAAAACGTGGACC
TATCACCCATAGTGGGTTCGAACCACTTCAACTACAACCGACGAATGCCA
GAGATACTCTCTTTGCTAGCGCTCGACGACTGCTCCAAGTACATCGCCCG
GGGCGACCGACGGGATCTCGACTCTTCGACGCGACTTTCAGCTTCAACTT
CAAGTGCAAGCATGGCGGGCCTGATTGATTTGAGCGGTTGATTGGTGGTT
TGTCGCATGTGGAGGTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7695:6724..7691+

>mRNA_M-pyrifera_M_contig7695.18137.1 ID=mRNA_M-pyrifera_M_contig7695.18137.1|Name=mRNA_M-pyrifera_M_contig7695.18137.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig7695:6724..7691+ (Macrocystis pyrifera P11B4 male)
CGGGTACTCCAAGTCGGACATCATCCTGGGCCTGGTTTTCCGAGCGAAGA
GCCTGTCGCTTTCGGTCGCAGGGATCCAGAAGCGGGTACTCCAAGTCGGA
CATCATCCTGGGCCTGGTTTTCCGAGCGAAGAGCCTGTCGCTTTCGGTCG
CAGGGATCCAGAAGGTGTCTGCGGTGGGCGTGGAAAACGTGGACCTATCA
CCCATAGTGGGTTCGAACCACTTCAACTACAACCGACGAATGCCAGAGAT
ACTCTCTTTGCTAGCGCTCGACGACTGCTCCAAGTACATCGCCCGGGGCG
ACCGACGGGATCTCGACTCTTCGACGCGACTTTCAGCTTCAACTTCAAGT
GCAAGCATGGCGGGCCTGATTGAGTGTCTGCGGTGGGCGTGGAAAACGTG
GACCTATCACCCATAGTGGGTTCGAACCACTTCAACTACAACCGACGAAT
GCCAGAGATACTCTCTTTGCTAGCGCTCGACGACTGCTCCAAGTACATCG
CCCGGGGCGACCGACGGGATCTCGACTCTTCGACGCGACTTTCAGCTTCA
ACTTCAAGTGCAAGCATGGCGGGCCTGATTGA
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