mRNA_M-pyrifera_M_contig76949.18136.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76949.18136.1
Unique NamemRNA_M-pyrifera_M_contig76949.18136.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76949.18136.1 vs. uniprot
Match: A0A6H5K2D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2D4_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 3.480e-27
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 1 
Query:   10 GVLLWLTDRASKHKTLRVWTQYLLEDYPAYLAFRVGSRTGNYELCVAALRALAPIFVATGRTNYQRLVMD-LTNVTRMTDKDRETIGTIFTSSYSGKYFTRVF 315
             V  WL  RAS H+TL++WT +LLEDYPAYLA R+G RTGNY +CV ALR LAP+  ATG+TNY  L ++ LT + R+   + ETIGT+FT+S+S + +T  F
Sbjct:  558 SVTAWLRQRASTHQTLKLWTPFLLEDYPAYLALRMGGRTGNYPMCVMALRKLAPMVGATGKTNYVTLCINHLTTLARIPANNLETIGTLFTASFSDRDYTNYF 660
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BLAST of mRNA_M-pyrifera_M_contig76949.18136.1 vs. uniprot
Match: A0A6H5LD09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD09_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.690e-22
Identity = 50/121 (41.32%), Postives = 69/121 (57.02%), Query Frame = 1 
Query:    1 MTEGVLLWLTDRASKHKTLRVWTQYLLEDYPAYLAFRVGSRTGNYELCVAALRALAPIFVATGRTNYQRLVMD-LTNVTRMTDKDRETIGTIFTSSYSGKYFTRVFLDEFKKWGTGM*RAL 360
            + +GV+ W+  RA  HKT  VW Q+LL DYPAY+AF    RTGN+ L +  LR +APIF   G   YQ LV+  LT V+R +  D   +  +F  S     F R+ LDE ++    + +AL
Sbjct:   25 VVDGVVRWIVARAESHKTFAVWEQFLLHDYPAYIAFHTALRTGNFSLRLEGLRRIAPIFFIAGEDKYQFLVVGHLTEVSRYSRNDMRVVSDLFFVSLGPDMFARIGLDERQEGSNRLYKAL 145
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BLAST of mRNA_M-pyrifera_M_contig76949.18136.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.550e-22
Identity = 52/124 (41.94%), Postives = 74/124 (59.68%), Query Frame = 1 
Query:    1 MTEGVLLWLTDRASKHKTLRVWTQYLLEDYPAYLAFRVGSRTGNYELCVAALRALAPIFVATGRTNYQRLVMD-LTNVTRMTDKDRETIGTIFTSSYSGKYFTRVFLDEFKKWGTGM*RALCER 369
            + +GV+ W+  R   HKT  VW Q+LL DYPAY+AFR   RTGN+ L +  LR +APIF  TG+  YQ LV+D LT V+R +  D   +  +F+ S     F R+ LDE ++    + + L +R
Sbjct: 1024 VVDGVVRWIVARTESHKTFAVWKQFLLHDYPAYIAFRTALRTGNFRLRLEGLRRIAPIFFITGKDKYQFLVVDHLTEVSRYSRNDMRVVSELFSVSLGPDTFARIGLDERQEVSNRLYKTLTKR 1147
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BLAST of mRNA_M-pyrifera_M_contig76949.18136.1 vs. uniprot
Match: A0A6H5L1K3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1K3_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.120e-21
Identity = 51/124 (41.13%), Postives = 74/124 (59.68%), Query Frame = 1 
Query:    1 MTEGVLLWLTDRASKHKTLRVWTQYLLEDYPAYLAFRVGSRTGNYELCVAALRALAPIFVATGRTNYQRLVMD-LTNVTRMTDKDRETIGTIFTSSYSGKYFTRVFLDEFKKWGTGM*RALCER 369
            + +GV+ W+  RA  HK   VW Q+LL DYPAY+AFR   RTGN+ L +  LR +APIF  TG+  YQ LV+D LT V+R +  D   +  +F+ S     F R+ LD+ ++    + + L +R
Sbjct:  350 VVDGVVRWIVARAESHKAFAVWKQFLLHDYPAYIAFRTALRTGNFRLRLEGLRRIAPIFFITGKDKYQFLVVDHLTEVSRYSRNDMRVVSELFSVSLGPDTFARIGLDKRQEVSNRLYKTLTKR 473
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BLAST of mRNA_M-pyrifera_M_contig76949.18136.1 vs. uniprot
Match: A0A6H5JXE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE3_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.140e-21
Identity = 48/109 (44.04%), Postives = 66/109 (60.55%), Query Frame = 1 
Query:    1 MTEGVLLWLTDRASKHKTLRVWTQYLLEDYPAYLAFRVGSRTGNYELCVAALRALAPIFVATGRTNYQRLVMD-LTNVTRMTDKDRETIGTIFTSSYSGKYFTRVFLDE 324
            + +GV+ W+  RA  HKT  VW Q+LL DYPAY+AF    RTGN+ L +  LR +AP+F  TG+  Y  LV+D LT V+R +  D   +  +F+ S     F R+ LDE
Sbjct:  100 VVDGVVRWIVARAESHKTFAVWKQFLLHDYPAYIAFPTALRTGNFRLRLEGLRRIAPVFSITGKDKYHFLVVDHLTEVSRYSRNDMRVVSELFSVSLGPDTFARIGLDE 208
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BLAST of mRNA_M-pyrifera_M_contig76949.18136.1 vs. uniprot
Match: D7FIA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIA9_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.650e-21
Identity = 52/124 (41.94%), Postives = 73/124 (58.87%), Query Frame = 1 
Query:    1 MTEGVLLWLTDRASKHKTLRVWTQYLLEDYPAYLAFRVGSRTGNYELCVAALRALAPIFVATGRTNYQRLVMD-LTNVTRMTDKDRETIGTIFTSSYSGKYFTRVFLDEFKKWGTGM*RALCER 369
            + +GV+ W+  RA   KT  VW Q+LL DYPAY+AFR   RTGN+ L +  LR +APIF  TG+  YQ LV+D LT V+R    D   +  +F+ S     F R+ LDE ++    + + L +R
Sbjct:  265 VVDGVVRWIVARAESRKTFAVWKQFLLHDYPAYIAFRTALRTGNFGLRLEGLRRIAPIFFITGKDKYQFLVVDHLTEVSRYLRNDMRVVSELFSVSLGPDTFARIGLDERQEVSNRLYKTLTKR 388
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BLAST of mRNA_M-pyrifera_M_contig76949.18136.1 vs. uniprot
Match: A0A6H5K3J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J0_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.270e-21
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = 1 
Query:   13 VLLWLTDRASKHKTLRVWTQYLLEDYPAYLAFRVGSRTGNYELCVAALRALAPIFVATGRTNYQRLVMDLTNVTRMTDKDRETIGTIFTSSYSGKYFTRVFLDEFKKWGTGM*RALCER 369
            V+ W+  RA++HKT  +W Q+LL D+PAY+AFR   RTG++ L + ALR +APIF  TG+  YQ LV+DL  ++RM++ D + I  +F+ S S     R+ LDE +     M + L +R
Sbjct:  311 VVAWIKKRAAEHKTFALWQQFLLHDFPAYMAFRTALRTGDFMLRLDALRRIAPIFYITGKDRYQFLVVDLAEMSRMSESDLKVIVKLFSVSLSKDACARLGLDERQGLTNRMYKTLTKR 429
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BLAST of mRNA_M-pyrifera_M_contig76949.18136.1 vs. uniprot
Match: A0A6H5JA33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA33_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.410e-20
Identity = 50/124 (40.32%), Postives = 72/124 (58.06%), Query Frame = 1 
Query:    1 MTEGVLLWLTDRASKHKTLRVWTQYLLEDYPAYLAFRVGSRTGNYELCVAALRALAPIFVATGRTNYQRLVMD-LTNVTRMTDKDRETIGTIFTSSYSGKYFTRVFLDEFKKWGTGM*RALCER 369
            + +GV+LWL  R    KT  VW Q+LL DYPAY+AFR   RTGN+ L +  L  +APIF  TG+  YQ LV+  LT V+R +      +  +F+ S +   F R+ LDE ++    + + L +R
Sbjct:   99 VVDGVVLWLVARTGSRKTFVVWKQFLLHDYPAYIAFRTALRTGNFRLRLEGLHRIAPIFFITGKDKYQFLVVHHLTEVSRYSRNGMRVVSELFSVSLAPDTFARIGLDERQEVSNRLYKTLTKR 222
[Close]
BLAST of mRNA_M-pyrifera_M_contig76949.18136.1 vs. uniprot
Match: A0A6H5KQU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQU3_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 4.210e-20
Identity = 49/124 (39.52%), Postives = 74/124 (59.68%), Query Frame = 1 
Query:    1 MTEGVLLWLTDRASKHKTLRVWTQYLLEDYPAYLAFRVGSRTGNYELCVAALRALAPIFVATGRTNYQRLVMD-LTNVTRMTDKDRETIGTIFTSSYSGKYFTRVFLDEFKKWGTGM*RALCER 369
            +  GV+ W+  RA  HKT  VW Q+LL DYPAY+AFR   RTGN+ L + AL  +APIF +TG+  YQ LV+D LT V+R +  +   +  +F+ S       ++ +DE ++    + + L +R
Sbjct:  285 VVHGVIRWIEARAEAHKTFAVWKQFLLHDYPAYIAFRTALRTGNFRLRLDALHRIAPIFYSTGKDEYQFLVVDHLTEVSRYSRNEMRVVSELFSVSLGPDTCAQIGVDERQEVANRLHKTLTKR 408
[Close]
BLAST of mRNA_M-pyrifera_M_contig76949.18136.1 vs. uniprot
Match: A0A6H5KTG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG2_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 8.420e-20
Identity = 49/123 (39.84%), Postives = 70/123 (56.91%), Query Frame = 1 
Query:    1 MTEGVLLWLTDRASKHKTLRVWTQYLLEDYPAYLAFRVGSRTGNYELCVAALRALAPIFVATGRTNYQRLVMDLTNVTRMTDKDRETIGTIFTSSYSGKYFTRVFLDEFKKWGTGM*RALCER 369
            + +GV+ W+  R   HKT  VW Q+LL DYPAY+AFR   RTGN+ L +  LR +APIF  TG+  YQ LV     V+R +  D   +  +F+ S     F R+ LDE ++    + + L +R
Sbjct:   25 VVDGVVRWIVARTESHKTFAVWKQFLLHDYPAYIAFRTALRTGNFRLRLEGLRRIAPIFFITGKDKYQFLV-----VSRYSRNDMRVVSELFSVSLGPDTFARIGLDERQEVSNRLYKTLTKR 142
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76949.18136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5K2D4_9PHAE3.480e-2755.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LD09_9PHAE1.690e-2241.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6D9_9PHAE2.550e-2241.94Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1K3_9PHAE1.120e-2141.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXE3_9PHAE1.140e-2144.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIA9_ECTSI2.650e-2141.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3J0_9PHAE3.270e-2142.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA33_9PHAE2.410e-2040.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQU3_9PHAE4.210e-2039.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTG2_9PHAE8.420e-2039.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76949contigM-pyrifera_M_contig76949:68..618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue1.4e-19
Seed eggNOG ortholog2880.D7FIA9
Hectar predicted targeting categoryother localisation
EggNOG OGs2D5KK@1,2SYVY@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size551
Cds size351
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816669.5965366-CDS-M-pyrifera_M_contig76949:67..4181622816669.5965366-CDS-M-pyrifera_M_contig76949:67..418Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76949 68..418 +
1692278109.1972845-CDS-M-pyrifera_M_contig76949:67..4181692278109.1972845-CDS-M-pyrifera_M_contig76949:67..418Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76949 68..418 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816669.6080713-UTR-M-pyrifera_M_contig76949:418..6181622816669.6080713-UTR-M-pyrifera_M_contig76949:418..618Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig76949 419..618 +
1692278109.2096126-UTR-M-pyrifera_M_contig76949:418..6181692278109.2096126-UTR-M-pyrifera_M_contig76949:418..618Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig76949 419..618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76949.18136.1prot_M-pyrifera_M_contig76949.18136.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76949 68..418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76949.18136.1

>prot_M-pyrifera_M_contig76949.18136.1 ID=prot_M-pyrifera_M_contig76949.18136.1|Name=mRNA_M-pyrifera_M_contig76949.18136.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
MTEGVLLWLTDRASKHKTLRVWTQYLLEDYPAYLAFRVGSRTGNYELCVA
ALRALAPIFVATGRTNYQRLVMDLTNVTRMTDKDRETIGTIFTSSYSGKY
FTRVFLDEFKKWGTGM*
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mRNA from alignment at M-pyrifera_M_contig76949:68..618+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76949.18136.1 ID=mRNA_M-pyrifera_M_contig76949.18136.1|Name=mRNA_M-pyrifera_M_contig76949.18136.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=551bp|location=Sequence derived from alignment at M-pyrifera_M_contig76949:68..618+ (Macrocystis pyrifera P11B4 male)
ATGACTGAAGGTGTCCTTCTCTGGCTTACAGACCGAGCAAGTAAGCACAA
GACGTTGAGAGTTTGGACTCAATACTTGTTGGAGGATTACCCTGCTTACC
TCGCGTTTCGGGTGGGTAGTCGCACGGGAAACTACGAGCTATGCGTGGCC
GCGCTGCGCGCGTTGGCGCCCATTTTCGTGGCCACGGGCAGGACCAACTA
CCAGCGCCTGGTCATGGATCTTACGAACGTGACAAGGATGACGGATAAGG
ACAGGGAAACGATTGGCACTATATTCACGTCTTCCTACAGCGGCAAGTAC
TTCACGCGTGTCTTCCTGGACGAATTCAAGAAATGGGGAACAGGGATGTG
AAGAGCGCTATGCGAAAGATAACGGAGGCGTTCGTGGCCAAGCTGCCAGC
TATCTGTGAGTGTAGGGCAAAGGCCGCGCGGGAATTCGACGAGCACCTGC
GTCCGGAATACAAGGAACTCGATGTCGTACCCGGAATCATCAAAGACAGA
GCAGGTGGGGTGGCAAAGGTCCTTCCCTGGTTGAAGGCATCCCCTGCTTT
C
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76949:68..618+

>mRNA_M-pyrifera_M_contig76949.18136.1 ID=mRNA_M-pyrifera_M_contig76949.18136.1|Name=mRNA_M-pyrifera_M_contig76949.18136.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig76949:68..618+ (Macrocystis pyrifera P11B4 male)
ATGACTGAAGGTGTCCTTCTCTGGCTTACAGACCGAGCAAGTAAGCACAA
GACGTTGAGAGTTTGGACTCAATACTTGTTGGAGGATTACCCTGCTTACC
TCGCGTTTCGGGTGGGTAGTCGCACGGGAAACTACGAGCTATGCGTGGCC
GCGCTGCGCGCGTTGGCGCCCATTTTCGTGGCCACGGGCAGGACCAACTA
CCAGCGCCTGGTCATGGATCTTACGAACGTGACAAGGATGACGGATAAGG
ACAGGGAAACGATTGGCACTATATTCACGTCTTCCTACAGCGGCAAGTAC
TTCACGCGTGTCTTCCTGGACGAATTCAAGAAATGGGGAACAGGGATGTG
AATGACTGAAGGTGTCCTTCTCTGGCTTACAGACCGAGCAAGTAAGCACA
AGACGTTGAGAGTTTGGACTCAATACTTGTTGGAGGATTACCCTGCTTAC
CTCGCGTTTCGGGTGGGTAGTCGCACGGGAAACTACGAGCTATGCGTGGC
CGCGCTGCGCGCGTTGGCGCCCATTTTCGTGGCCACGGGCAGGACCAACT
ACCAGCGCCTGGTCATGGATCTTACGAACGTGACAAGGATGACGGATAAG
GACAGGGAAACGATTGGCACTATATTCACGTCTTCCTACAGCGGCAAGTA
CTTCACGCGTGTCTTCCTGGACGAATTCAAGAAATGGGGAACAGGGATGT
GA
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