mRNA_M-pyrifera_M_contig76928.18130.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76928.18130.1
Unique NamemRNA_M-pyrifera_M_contig76928.18130.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76928.18130.1 vs. uniprot
Match: A0A0G4G0W2_VITBC (Uncharacterized protein n=5 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G0W2_VITBC)

HSP 1 Score: 72.8 bits (177), Expect = 9.650e-12
Identity = 43/137 (31.39%), Postives = 79/137 (57.66%), Query Frame = 1 
Query:   46 RRARLEARRNKLCRHLAEAIRGFDNAVAHLARERHIIAGDLASASLRLRTLQAEEALLEELQVTGRGLMDRASKARSERERLGKAVRDCRQRVAERSAEIAEWDAREAELKASLQEMLSGHPPDAVEALTKIFRRKI 456
            RR RL   +  + +H+   I  FD+A++ LA+ER  +  DL +A ++   L  E  LL EL+     L  ++ K R+++    ++++DC++++A++ AEI +W   E  L+A   EM+  + P  +  L KI++RK+
Sbjct: 1542 RRQRLMHEKKVMEKHMLRLIETFDSALSTLAKERTKLESDLKNAEIKRLVLNEELQLLNELEERDAALYKKSQKCRADKNANLQSIKDCQEQLADKKAEIEQWQQEEQNLQAEFTEMVGENSP-FLAPLLKIYKRKV 1677
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BLAST of mRNA_M-pyrifera_M_contig76928.18130.1 vs. uniprot
Match: A0A2R5GDY3_9STRA (Echinoderm microtubule-associated protein-like 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GDY3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.450e-11
Identity = 45/152 (29.61%), Postives = 78/152 (51.32%), Query Frame = 1 
Query:   40 HIRRARLEARRNKLCRHLAEAIRGFDNAVAHLARERHIIAGDLASASLRLRTLQAEEALLEELQVTGRGLMDRASKARSERERLGKAVRDCRQRVAERSAEIAEWDAREAELKASLQEMLSGHPPDAVEALTKIFRRKIRRARADGD-DSDS 492
            + +R +L   ++++     E++R FD+AV  L +ER  +  DL +A LR   L  E+ LL E +     L  +    R ++  +   +  C++ +A + AE+A W  ++  +      ++ G    A   L KIF+RKI+R +  GD DSDS
Sbjct: 1253 NTKRKQLLFEKSRILERSLESVRAFDSAVYELRKERAQLDADLVAAELRQILLFREQQLLNEFEKKDHALSSKLDSCRQQKSEVLAEITSCQENLAAKKAELAIWQEKDRVIFEEFHTLVGGDANPASAQLLKIFKRKIKRVKQQGDGDSDS 1404
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BLAST of mRNA_M-pyrifera_M_contig76928.18130.1 vs. uniprot
Match: A0A8K1C771_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C771_PYTOL)

HSP 1 Score: 63.9 bits (154), Expect = 1.110e-8
Identity = 44/146 (30.14%), Postives = 79/146 (54.11%), Query Frame = 1 
Query:   43 IRRARLEARRNKLCRHLAEAIRGFDNAVAHLARERHIIAGDLASASLRLRTLQAEEALLEELQVTGRGLMDRASKARSERERLGKAVRDCRQRVAERSAEIAEWDAREAELKASLQEMLSGH----PPDAVEALTKIFRRKIRRAR 468
            IR  +++   ++L R   + IR FD+AVAHL RE+  +        LRL TL  E +LLE+ +     L  +  K++SE+  +   +RD ++ ++ +  ++ EW  +E  ++     +++G     P     AL KIF++KI+RA+
Sbjct: 1511 IRIYQIKQEIHRLQRKQRDEIRAFDDAVAHLRREKMRLDVVFKQCELRLFTLWHELSLLEQFESRENLLSSKLDKSKSEKALIVAEIRDIQENMSHKKKDVEEWGKQERAIQTEFLTLVNGANGTTPHPQFLALQKIFKKKIKRAK 1656
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BLAST of mRNA_M-pyrifera_M_contig76928.18130.1 vs. uniprot
Match: K3X7R6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7R6_GLOUD)

HSP 1 Score: 58.5 bits (140), Expect = 7.990e-7
Identity = 41/137 (29.93%), Postives = 73/137 (53.28%), Query Frame = 1 
Query:   76 KLCRHLAEAIRGFDNAVAHLARERHIIAGDLASASLRLRTLQAEEALLEELQVTGRGLMDRASKARSERERLGKAVRDCRQRVAERSAEIAEWDAREAELKASLQEMLSG------HPPDAVEALTKIFRRKIRRAR 468
            K+ R   + IR FD+A+AHL RE+  +   L    LRL TL +E  LLE+ +     L  +  K++ E+ ++   + + ++ ++ +  E  EW  +E  +++     ++G      HP  A  AL KIF++KI+R +
Sbjct: 1455 KIERKKQDEIRAFDDAIAHLRREKMKLEVILKKCELRLFTLLSELVLLEQFENKENLLSSKLDKSKGEKAQIVAEINEIQENLSNKKKEHEEWSKQEKAIQSEFLTTVNGNNGSTQHPNFA--ALQKIFKKKIKRPK 1589
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BLAST of mRNA_M-pyrifera_M_contig76928.18130.1 vs. uniprot
Match: A0A8J5XMN0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XMN0_DIALT)

HSP 1 Score: 57.0 bits (136), Expect = 2.690e-6
Identity = 43/139 (30.94%), Postives = 69/139 (49.64%), Query Frame = 1 
Query:   52 ARLEARRNKLCRHLAEAIRGFDNAVAHLARERHIIAGDLASASLRLRTLQAEEALLEELQVTGRGLMDRASKARSERERLGKAVRDCRQRVAERSAEIAEWDAREAELKASLQEMLSGHPPDAVEALTKIFRRKIRRAR 468
            ARL A R  + R  A     FD+A A L  E   +  DL +  +R   L  E  LL+E +     L  R    R+E+  L   + +C++R++ +  EI     ++ E+ A     +  +  +A +AL KIFRRK++RA+
Sbjct: 1253 ARLRAERALITRRQARTRETFDSAAAELLAEHLKLIADLQATDMRRLLLFRELQLLKEFEKRDLALAKRLELKRAEKAELVARISECQERLSAKRLEIERLLTKDKEIMAEYNAAVGDNNKNA-DALQKIFRRKVKRAK 1390
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76928.18130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0G4G0W2_VITBC9.650e-1231.39Uncharacterized protein n=5 Tax=Vitrella brassicaf... [more]
A0A2R5GDY3_9STRA4.450e-1129.61Echinoderm microtubule-associated protein-like 1 n... [more]
A0A8K1C771_PYTOL1.110e-830.14Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X7R6_GLOUD7.990e-729.93Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8J5XMN0_DIALT2.690e-630.94Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76928contigM-pyrifera_M_contig76928:413..934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue9.2e-07
Seed eggNOG ortholog65071.PYU1_T013265
Preferred nameCFAP44
Hectar predicted targeting categoryother localisation
GOsGO:0001539,GO:0006928,GO:0008150,GO:0009987,GO:0040011,GO:0048870,GO:0051179,GO:0051674,GO:0060285
EggNOG free text desc.Protein 3.4F-V. Source PGD
EggNOG OGs1MA7N@121069,COG2319@1,KOG2106@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size522
Cds size522
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816669.3185718-CDS-M-pyrifera_M_contig76928:412..9341622816669.3185718-CDS-M-pyrifera_M_contig76928:412..934Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76928 413..934 +
1692278109.0575922-CDS-M-pyrifera_M_contig76928:412..9341692278109.0575922-CDS-M-pyrifera_M_contig76928:412..934Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76928 413..934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76928.18130.1prot_M-pyrifera_M_contig76928.18130.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76928 413..934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76928.18130.1

>prot_M-pyrifera_M_contig76928.18130.1 ID=prot_M-pyrifera_M_contig76928.18130.1|Name=mRNA_M-pyrifera_M_contig76928.18130.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
AAVPSEEDVGEWTHIRRARLEARRNKLCRHLAEAIRGFDNAVAHLARERH
IIAGDLASASLRLRTLQAEEALLEELQVTGRGLMDRASKARSERERLGKA
VRDCRQRVAERSAEIAEWDAREAELKASLQEMLSGHPPDAVEALTKIFRR
KIRRARADGDDSDSGSEADFDLAA
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mRNA from alignment at M-pyrifera_M_contig76928:413..934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76928.18130.1 ID=mRNA_M-pyrifera_M_contig76928.18130.1|Name=mRNA_M-pyrifera_M_contig76928.18130.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig76928:413..934+ (Macrocystis pyrifera P11B4 male)
GCAGCTGTGCCTTCAGAAGAAGATGTTGGGGAGTGGACACATATTCGACG
GGCACGACTTGAAGCGAGACGAAATAAACTGTGTCGCCATCTTGCAGAAG
CGATTCGTGGGTTTGACAATGCTGTTGCACATCTTGCAAGGGAGCGACAC
ATTATTGCTGGTGATCTCGCATCAGCATCATTGCGTCTGCGAACACTGCA
AGCAGAAGAAGCATTGCTTGAAGAATTGCAAGTGACTGGAAGAGGACTGA
TGGATCGTGCAAGTAAGGCACGTTCAGAACGAGAGCGACTTGGAAAAGCA
GTACGTGATTGCAGACAACGAGTTGCAGAACGATCAGCTGAAATTGCTGA
ATGGGATGCAAGGGAAGCAGAGTTGAAAGCAAGTTTGCAAGAGATGCTCT
CTGGACATCCACCTGATGCTGTGGAAGCACTGACCAAGATCTTCCGTCGA
AAGATTCGACGTGCAAGAGCTGATGGGGATGATTCTGATTCAGGATCAGA
AGCTGACTTTGATCTTGCTGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76928:413..934+

>mRNA_M-pyrifera_M_contig76928.18130.1 ID=mRNA_M-pyrifera_M_contig76928.18130.1|Name=mRNA_M-pyrifera_M_contig76928.18130.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig76928:413..934+ (Macrocystis pyrifera P11B4 male)
GCAGCTGTGCCTTCAGAAGAAGATGTTGGGGAGTGGACACATATTCGACG
GGCACGACTTGAAGCGAGACGAAATAAACTGTGTCGCCATCTTGCAGAAG
CGATTCGTGGGTTTGACAATGCTGTTGCACATCTTGCAAGGGAGCGACAC
ATTATTGCTGGTGATCTCGCATCAGCATCATTGCGTCTGCGAACACTGCA
AGCAGAAGAAGCATTGCTTGAAGAATTGCAAGTGACTGGAAGAGGACTGA
TGGATCGTGCAAGTAAGGCACGTTCAGAACGAGAGCGACTTGGAAAAGCA
GTACGTGATTGCAGACAACGAGTTGCAGAACGATCAGCTGAAATTGCTGA
ATGGGATGCAAGGGAAGCAGAGTTGAAAGCAAGTTTGCAAGAGATGCTCT
CTGGACATCCACCTGATGCTGTGGAAGCACTGACCAAGATCTTCCGTCGA
AAGATTCGACGTGCAAGAGCTGATGGGGATGATTCTGATTCAGGATCAGA
AGCTGACTTTGATCTTGCTGCGGCAGCTGTGCCTTCAGAAGAAGATGTTG
GGGAGTGGACACATATTCGACGGGCACGACTTGAAGCGAGACGAAATAAA
CTGTGTCGCCATCTTGCAGAAGCGATTCGTGGGTTTGACAATGCTGTTGC
ACATCTTGCAAGGGAGCGACACATTATTGCTGGTGATCTCGCATCAGCAT
CATTGCGTCTGCGAACACTGCAAGCAGAAGAAGCATTGCTTGAAGAATTG
CAAGTGACTGGAAGAGGACTGATGGATCGTGCAAGTAAGGCACGTTCAGA
ACGAGAGCGACTTGGAAAAGCAGTACGTGATTGCAGACAACGAGTTGCAG
AACGATCAGCTGAAATTGCTGAATGGGATGCAAGGGAAGCAGAGTTGAAA
GCAAGTTTGCAAGAGATGCTCTCTGGACATCCACCTGATGCTGTGGAAGC
ACTGACCAAGATCTTCCGTCGAAAGATTCGACGTGCAAGAGCTGATGGGG
ATGATTCTGATTCAGGATCAGAAGCTGACTTTGATCTTGCTGCG
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