mRNA_M-pyrifera_M_contig7691.18125.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7691.18125.1
Unique NamemRNA_M-pyrifera_M_contig7691.18125.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7691.18125.1 vs. uniprot
Match: D8LJN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJN8_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 3.260e-7
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   13 CSPNPCQNGGSCAMDVGGGSICTCTSGFGGLFCQTDTS 126
            C+PNPC N GSC +D  GG  C+C+S +GG+ C+TDT+
Sbjct:  383 CNPNPCLNEGSCEVDPNGGYSCSCSSSYGGMNCETDTT 420
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BLAST of mRNA_M-pyrifera_M_contig7691.18125.1 vs. uniprot
Match: UPI0013902961 (neurogenic locus notch homolog protein 1 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013902961)

HSP 1 Score: 51.2 bits (121), Expect = 2.910e-6
Identity = 24/40 (60.00%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:    7 SACSPNPCQNGGSCAMDVG--GGSICTCTSGFGGLFCQTD 120
            S CSPNPC+NGG CA D+G   G  C C SGF G  CQ+D
Sbjct:  756 SPCSPNPCENGGKCADDLGQDSGYRCVCRSGFSGARCQSD 795
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BLAST of mRNA_M-pyrifera_M_contig7691.18125.1 vs. uniprot
Match: G3N5G0_GASAC (FAT atypical cadherin 3a n=9 Tax=Gasterosteus aculeatus TaxID=69293 RepID=G3N5G0_GASAC)

HSP 1 Score: 49.7 bits (117), Expect = 1.020e-5
Identity = 20/42 (47.62%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    1 DLSACSPNPCQNGGSCAMDVGGGSICTCTSGFGGLFCQTDTS 126
            +++AC PNPCQNGG+C   +G   +C+C  GF GL C+ D +
Sbjct: 4098 EITACIPNPCQNGGAC-RPIGNAFLCSCRRGFKGLICEEDVN 4138
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BLAST of mRNA_M-pyrifera_M_contig7691.18125.1 vs. uniprot
Match: A0A821E1S3_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A821E1S3_9BILA)

HSP 1 Score: 47.0 bits (110), Expect = 1.070e-5
Identity = 20/34 (58.82%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:   13 CSPNPCQNGGSCAMDVGGGSICTCTSGFGGLFCQ 114
            C PNPC+NGGSCA+  GGG  C C +GF G  C+
Sbjct:   12 CLPNPCRNGGSCAVVPGGGFRCICGAGFTGARCE 45
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BLAST of mRNA_M-pyrifera_M_contig7691.18125.1 vs. uniprot
Match: UPI000F4EA386 (inactive serine protease PAMR1 n=1 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI000F4EA386)

HSP 1 Score: 49.3 bits (116), Expect = 1.400e-5
Identity = 21/38 (55.26%), Postives = 25/38 (65.79%), Query Frame = 1 
Query:    1 DLSACSPNPCQNGGSCAMDVGGGSICTCTSGFGGLFCQ 114
            +LS CSPNPC NGG CA+D      C C +GF GL C+
Sbjct:  251 ELSVCSPNPCMNGGICALDTVQTFHCACQAGFTGLLCE 288
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BLAST of mRNA_M-pyrifera_M_contig7691.18125.1 vs. uniprot
Match: A0A7N8WJ68_9TELE (FAT atypical cadherin 3a n=1 Tax=Mastacembelus armatus TaxID=205130 RepID=A0A7N8WJ68_9TELE)

HSP 1 Score: 48.1 bits (113), Expect = 3.580e-5
Identity = 20/42 (47.62%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:    1 DLSACSPNPCQNGGSCAMDVGGGSICTCTSGFGGLFCQTDTS 126
            +++AC PNPCQNGG C   +G   +C+C  GF GL C+ D +
Sbjct: 4062 EITACVPNPCQNGGMC-KPIGNAFLCSCRRGFKGLTCEEDVN 4102
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BLAST of mRNA_M-pyrifera_M_contig7691.18125.1 vs. uniprot
Match: A0A7N8XVU5_9TELE (FAT atypical cadherin 3a n=1 Tax=Mastacembelus armatus TaxID=205130 RepID=A0A7N8XVU5_9TELE)

HSP 1 Score: 48.1 bits (113), Expect = 3.580e-5
Identity = 20/42 (47.62%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:    1 DLSACSPNPCQNGGSCAMDVGGGSICTCTSGFGGLFCQTDTS 126
            +++AC PNPCQNGG C   +G   +C+C  GF GL C+ D +
Sbjct: 4058 EITACVPNPCQNGGMC-KPIGNAFLCSCRRGFKGLTCEEDVN 4098
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BLAST of mRNA_M-pyrifera_M_contig7691.18125.1 vs. uniprot
Match: A0A7N8X7Q2_9TELE (FAT atypical cadherin 3a n=1 Tax=Mastacembelus armatus TaxID=205130 RepID=A0A7N8X7Q2_9TELE)

HSP 1 Score: 48.1 bits (113), Expect = 3.580e-5
Identity = 20/42 (47.62%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:    1 DLSACSPNPCQNGGSCAMDVGGGSICTCTSGFGGLFCQTDTS 126
            +++AC PNPCQNGG C   +G   +C+C  GF GL C+ D +
Sbjct: 4042 EITACVPNPCQNGGMC-KPIGNAFLCSCRRGFKGLTCEEDVN 4082
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BLAST of mRNA_M-pyrifera_M_contig7691.18125.1 vs. uniprot
Match: A0A4W6CNF7_LATCA (FAT atypical cadherin 3a n=1 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6CNF7_LATCA)

HSP 1 Score: 47.8 bits (112), Expect = 4.900e-5
Identity = 20/42 (47.62%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:    1 DLSACSPNPCQNGGSCAMDVGGGSICTCTSGFGGLFCQTDTS 126
            +++AC PNPCQNGG C   +G   +C+C  GF GL C+ D +
Sbjct: 4057 EITACVPNPCQNGGVC-KPIGNAFLCSCRRGFKGLTCEEDVN 4097
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BLAST of mRNA_M-pyrifera_M_contig7691.18125.1 vs. uniprot
Match: A0A8D3CRY4_SCOMX (Uncharacterized protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3CRY4_SCOMX)

HSP 1 Score: 47.8 bits (112), Expect = 4.900e-5
Identity = 20/42 (47.62%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:    1 DLSACSPNPCQNGGSCAMDVGGGSICTCTSGFGGLFCQTDTS 126
            +++AC PNPCQNGG C   +G   +C+C  GF GL C+ D +
Sbjct: 4076 EITACVPNPCQNGGVC-KPIGNAFLCSCRRGFKGLTCEEDVN 4116
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7691.18125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LJN8_ECTSI3.260e-755.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI00139029612.910e-660.00neurogenic locus notch homolog protein 1 n=1 Tax=N... [more]
G3N5G0_GASAC1.020e-547.62FAT atypical cadherin 3a n=9 Tax=Gasterosteus acul... [more]
A0A821E1S3_9BILA1.070e-558.82Hypothetical protein (Fragment) n=1 Tax=Rotaria ma... [more]
UPI000F4EA3861.400e-555.26inactive serine protease PAMR1 n=1 Tax=Tachysurus ... [more]
A0A7N8WJ68_9TELE3.580e-547.62FAT atypical cadherin 3a n=1 Tax=Mastacembelus arm... [more]
A0A7N8XVU5_9TELE3.580e-547.62FAT atypical cadherin 3a n=1 Tax=Mastacembelus arm... [more]
A0A7N8X7Q2_9TELE3.580e-547.62FAT atypical cadherin 3a n=1 Tax=Mastacembelus arm... [more]
A0A4W6CNF7_LATCA4.900e-547.62FAT atypical cadherin 3a n=1 Tax=Lates calcarifer ... [more]
A0A8D3CRY4_SCOMX4.900e-547.62Uncharacterized protein n=1 Tax=Scophthalmus maxim... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7691contigM-pyrifera_M_contig7691:12451..12579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816669.0578108-CDS-M-pyrifera_M_contig7691:12450..125791622816669.0578108-CDS-M-pyrifera_M_contig7691:12450..12579Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7691 12451..12579 -
1692278108.9143522-CDS-M-pyrifera_M_contig7691:12450..125791692278108.9143522-CDS-M-pyrifera_M_contig7691:12450..12579Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7691 12451..12579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7691.18125.1prot_M-pyrifera_M_contig7691.18125.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7691 12451..12579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7691.18125.1

>prot_M-pyrifera_M_contig7691.18125.1 ID=prot_M-pyrifera_M_contig7691.18125.1|Name=mRNA_M-pyrifera_M_contig7691.18125.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=43bp
DLSACSPNPCQNGGSCAMDVGGGSICTCTSGFGGLFCQTDTSC
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mRNA from alignment at M-pyrifera_M_contig7691:12451..12579-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7691.18125.1 ID=mRNA_M-pyrifera_M_contig7691.18125.1|Name=mRNA_M-pyrifera_M_contig7691.18125.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=129bp|location=Sequence derived from alignment at M-pyrifera_M_contig7691:12451..12579- (Macrocystis pyrifera P11B4 male)
GACCTGAGCGCATGCAGTCCTAACCCTTGCCAGAACGGAGGCTCGTGCGC
TATGGATGTCGGTGGCGGGAGTATATGCACCTGCACGTCAGGTTTCGGGG
GTCTGTTCTGCCAGACCGACACGTCATGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7691:12451..12579-

>mRNA_M-pyrifera_M_contig7691.18125.1 ID=mRNA_M-pyrifera_M_contig7691.18125.1|Name=mRNA_M-pyrifera_M_contig7691.18125.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig7691:12451..12579- (Macrocystis pyrifera P11B4 male)
GACCTGAGCGCATGCAGTCCTAACCCTTGCCAGAACGGAGGCTCGTGCGC
TATGGATGTCGGTGGCGGGAGTATATGCACCTGCACGTCAGGTTTCGGGG
GTCTGTTCTGCCAGACCGACACGTCATGTGACCTGAGCGCATGCAGTCCT
AACCCTTGCCAGAACGGAGGCTCGTGCGCTATGGATGTCGGTGGCGGGAG
TATATGCACCTGCACGTCAGGTTTCGGGGGTCTGTTCTGCCAGACCGACA
CGTCATGT
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