mRNA_M-pyrifera_M_contig7690.18122.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7690.18122.1
Unique NamemRNA_M-pyrifera_M_contig7690.18122.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7690.18122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7690contigM-pyrifera_M_contig7690:11617..12177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size561
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7690.18122.1prot_M-pyrifera_M_contig7690.18122.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7690 11732..12127 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816668.910321-UTR-M-pyrifera_M_contig7690:11616..117311622816668.910321-UTR-M-pyrifera_M_contig7690:11616..11731Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7690 11617..11731 +
1692278108.8430648-UTR-M-pyrifera_M_contig7690:11616..117311692278108.8430648-UTR-M-pyrifera_M_contig7690:11616..11731Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7690 11617..11731 +
1622816668.9438326-UTR-M-pyrifera_M_contig7690:12127..121771622816668.9438326-UTR-M-pyrifera_M_contig7690:12127..12177Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7690 12128..12177 +
1692278108.8637834-UTR-M-pyrifera_M_contig7690:12127..121771692278108.8637834-UTR-M-pyrifera_M_contig7690:12127..12177Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7690 12128..12177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816668.9287086-CDS-M-pyrifera_M_contig7690:11731..121271622816668.9287086-CDS-M-pyrifera_M_contig7690:11731..12127Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7690 11732..12127 +
1692278108.8542316-CDS-M-pyrifera_M_contig7690:11731..121271692278108.8542316-CDS-M-pyrifera_M_contig7690:11731..12127Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7690 11732..12127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7690.18122.1

>prot_M-pyrifera_M_contig7690.18122.1 ID=prot_M-pyrifera_M_contig7690.18122.1|Name=mRNA_M-pyrifera_M_contig7690.18122.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MLFLMKVVDKMLVTGTHVQRHRLASFARSRPYSCFPPAIARTRYAQTFSL
RKRRQPISRATPTTSLRPCHEEIGQLFLLISELPLCPEICGPFGIHISVS
ERSLLLQTQRQMAILPKKASFPFPPPRDPTP*
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mRNA from alignment at M-pyrifera_M_contig7690:11617..12177+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7690.18122.1 ID=mRNA_M-pyrifera_M_contig7690.18122.1|Name=mRNA_M-pyrifera_M_contig7690.18122.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=561bp|location=Sequence derived from alignment at M-pyrifera_M_contig7690:11617..12177+ (Macrocystis pyrifera P11B4 male)
CTCATTTGTTGCTTTCCATAGACATTTGAACATTGACCACACATATACCC
CTTTCGAGACGGAGCACCGTTCTTACTCGTACTAGAGACACACCTCCAAC
ATTTGGGTGCTCATTATGTTGTTTCTCATGAAGGTCGTTGATAAAATGCT
CGTTACTGGCACGCACGTACAAAGACACAGACTTGCCTCATTCGCCCGTT
CTCGTCCCTACTCCTGTTTTCCGCCGGCCATCGCACGTACAAGGTACGCA
CAAACCTTCTCGCTTCGAAAACGACGACAACCCATCTCGCGCGCGACCCC
TACCACAAGCCTAAGGCCATGCCACGAAGAAATTGGTCAGCTTTTTTTAC
TCATCTCCGAGCTACCGCTTTGTCCGGAAATTTGTGGACCGTTTGGGATT
CACATCAGTGTATCTGAACGGTCCCTACTCTTGCAGACACAGCGGCAGAT
GGCGATACTACCCAAAAAAGCCTCCTTCCCTTTCCCCCCTCCTCGAGACC
CCACGCCCTGATGTGTGCCCATTCGCTCAAGATGGGAGCCCCTACCATAT
TTTACTACAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7690:11617..12177+

>mRNA_M-pyrifera_M_contig7690.18122.1 ID=mRNA_M-pyrifera_M_contig7690.18122.1|Name=mRNA_M-pyrifera_M_contig7690.18122.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig7690:11617..12177+ (Macrocystis pyrifera P11B4 male)
ATGTTGTTTCTCATGAAGGTCGTTGATAAAATGCTCGTTACTGGCACGCA
CGTACAAAGACACAGACTTGCCTCATTCGCCCGTTCTCGTCCCTACTCCT
GTTTTCCGCCGGCCATCGCACGTACAAGGTACGCACAAACCTTCTCGCTT
CGAAAACGACGACAACCCATCTCGCGCGCGACCCCTACCACAAGCCTAAG
GCCATGCCACGAAGAAATTGGTCAGCTTTTTTTACTCATCTCCGAGCTAC
CGCTTTGTCCGGAAATTTGTGGACCGTTTGGGATTCACATCAGTGTATCT
GAACGGTCCCTACTCTTGCAGACACAGCGGCAGATGGCGATACTACCCAA
AAAAGCCTCCTTCCCTTTCCCCCCTCCTCGAGACCCCACGCCCTGAATGT
TGTTTCTCATGAAGGTCGTTGATAAAATGCTCGTTACTGGCACGCACGTA
CAAAGACACAGACTTGCCTCATTCGCCCGTTCTCGTCCCTACTCCTGTTT
TCCGCCGGCCATCGCACGTACAAGGTACGCACAAACCTTCTCGCTTCGAA
AACGACGACAACCCATCTCGCGCGCGACCCCTACCACAAGCCTAAGGCCA
TGCCACGAAGAAATTGGTCAGCTTTTTTTACTCATCTCCGAGCTACCGCT
TTGTCCGGAAATTTGTGGACCGTTTGGGATTCACATCAGTGTATCTGAAC
GGTCCCTACTCTTGCAGACACAGCGGCAGATGGCGATACTACCCAAAAAA
GCCTCCTTCCCTTTCCCCCCTCCTCGAGACCCCACGCCCTGA
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