mRNA_M-pyrifera_M_contig76897.18116.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76897.18116.1
Unique NamemRNA_M-pyrifera_M_contig76897.18116.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76897.18116.1 vs. uniprot
Match: A0A1X7UZK0_AMPQE (AA_permease_C domain-containing protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UZK0_AMPQE)

HSP 1 Score: 80.5 bits (197), Expect = 1.230e-16
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 1
Query:   10 GALAVLSLLPFALLHRFPTPPENLPSTFQCPLVPTIPLLAIAINLTMLAGLKADAWFRLAIWTAIGIALYLLYGIRYSILRSIQPE 267
            G +A L  +    +  +     N P+TF+CPL+P IP L IAIN+ MLAGLK+ AW RL IW AIGI +Y+ YGI  S +R   P+
Sbjct:   55 GGVAFLLFIALCFMKTY-----NTPTTFKCPLLPLIPCLGIAINMYMLAGLKSAAWIRLGIWLAIGILIYVFYGIWNSKMRDYVPK 135          
BLAST of mRNA_M-pyrifera_M_contig76897.18116.1 vs. uniprot
Match: A0A812VIK8_9DINO (Slc7a2 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VIK8_9DINO)

HSP 1 Score: 83.6 bits (205), Expect = 2.260e-16
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   13 ALAVLSLLPFALLHRFPTPPENLPSTFQCPLVPTIPLLAIAINLTMLAGLKADAWFRLAIWTAIGIALYLLYGIRYSILR 252
            ALAV +L    L   +  PP N+P TFQCP VP +P L IA+NL M+AGL   AW RL  WT +G+ +Y LY +R+S LR
Sbjct:  489 ALAVAALA-LCLYMWWAFPPVNVPPTFQCPAVPFVPCLGIAVNLVMMAGLDPSAWLRLGAWTLVGLVIYFLYSVRFSKLR 567          
BLAST of mRNA_M-pyrifera_M_contig76897.18116.1 vs. uniprot
Match: UPI0005C33C44 (uncharacterized protein LOC100636953 n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI0005C33C44)

HSP 1 Score: 81.6 bits (200), Expect = 1.050e-15
Identity = 42/86 (48.84%), Postives = 54/86 (62.79%), Query Frame = 1
Query:   10 GALAVLSLLPFALLHRFPTPPENLPSTFQCPLVPTIPLLAIAINLTMLAGLKADAWFRLAIWTAIGIALYLLYGIRYSILRSIQPE 267
            G +A L  +    +  +     N P+TF+CPLVP IP L IAIN+ MLAGLK+ AW RL IW AIGI +Y+ YGI  S +R   P+
Sbjct:  465 GGVAFLFFIALCFMKTY-----NTPTTFKCPLVPLIPCLGIAINMYMLAGLKSAAWIRLGIWLAIGILIYVFYGIWNSKMRDYVPK 545          
BLAST of mRNA_M-pyrifera_M_contig76897.18116.1 vs. uniprot
Match: A0A1X7UZ20_AMPQE (AA_permease_C domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UZ20_AMPQE)

HSP 1 Score: 80.9 bits (198), Expect = 2.060e-15
Identity = 42/85 (49.41%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   10 GALAVLSLLPFALLHRFPTPPENLPSTFQCPLVPTIPLLAIAINLTMLAGLKADAWFRLAIWTAIGIALYLLYGIRYSILRSIQP 264
            G +A L  +    +  +     N P+TF+CPLVP IP L IAIN+ MLAGLK+ AW RL IW AIGI +Y+ YGI  S +R   P
Sbjct:  465 GGVAFLFFIALCFMKTY-----NTPTTFKCPLVPLIPCLGIAINMYMLAGLKSAAWIRLGIWLAIGILIYVFYGIWNSKMRDYIP 544          
BLAST of mRNA_M-pyrifera_M_contig76897.18116.1 vs. uniprot
Match: L8GUL6_ACACA (AA_permease_C domain-containing protein (Fragment) n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GUL6_ACACA)

HSP 1 Score: 70.5 bits (171), Expect = 3.820e-13
Identity = 30/59 (50.85%), Postives = 44/59 (74.58%), Query Frame = 1
Query:   76 NLPSTFQCPLVPTIPLLAIAINLTMLAGLKADAWFRLAIWTAIGIALYLLYGIRYSILR 252
            NLP+TF CPLVP IP + + +N+ ++  L  +A++R+ +WTAIG+A+Y  YGIR S LR
Sbjct:    3 NLPTTFSCPLVPLIPSVGVLVNIYLITSLPIEAFYRVLVWTAIGLAIYFGYGIRNSALR 61          
BLAST of mRNA_M-pyrifera_M_contig76897.18116.1 vs. uniprot
Match: A0A4Y2AA19_ARAVE (Cationic amino acid transporter 4 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2AA19_ARAVE)

HSP 1 Score: 71.6 bits (174), Expect = 3.420e-12
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    1 WAVGALAVL-----SLLPFALLHRFPTPPENLPSTFQCPLVPTIPLLAIAINLTMLAGLKADAWFRLAIWTAIGIALYLLYGIRYS 243
            WAV  +AVL     S     L+H+      N P  ++ PLVP IP L++++N+ ++  LK+  W R+AIW A+G+ +YL YG+R+S
Sbjct:  515 WAVALIAVLLICVISSFVLILMHK----QSNAPLKYKVPLVPLIPALSVSVNIILIVSLKSATWIRMAIWVAVGLIIYLFYGMRHS 596          
BLAST of mRNA_M-pyrifera_M_contig76897.18116.1 vs. uniprot
Match: L8GST8_ACACA (Cationic amino acid transporter, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GST8_ACACA)

HSP 1 Score: 70.5 bits (171), Expect = 8.170e-12
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 1
Query:    1 WAVGALAVLSLLPFALLHRFPTPPENLPSTFQCPLVPTIPLLAIAINLTMLAGLKADAWFRLAIWTAIGIALYLLYGIRYSILRSIQPEDNK 276
            ++     +L++LP A  + F T    +P TF+CPLVP  P+L I  N+ ++A L A  W+RL  W A+G+ +YL YGIR S L   Q E N+
Sbjct:  354 YSAAIFGLLAVLPIA--YFFKTTQTFVPETFKCPLVPLTPILGILSNIYLMANLTAATWWRLFGWLALGLCIYLGYGIRNSRLAKRQNEYNE 443          
BLAST of mRNA_M-pyrifera_M_contig76897.18116.1 vs. uniprot
Match: L8GV49_ACACA (Amino acid permease n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GV49_ACACA)

HSP 1 Score: 70.5 bits (171), Expect = 8.680e-12
Identity = 30/59 (50.85%), Postives = 44/59 (74.58%), Query Frame = 1
Query:   76 NLPSTFQCPLVPTIPLLAIAINLTMLAGLKADAWFRLAIWTAIGIALYLLYGIRYSILR 252
            NLP+TF CPLVP IP + + +N+ ++  L  +A++R+ +WTAIG+A+Y  YGIR S LR
Sbjct:  479 NLPTTFSCPLVPLIPSVGVLVNIYLITSLPIEAFYRVLVWTAIGLAIYFGYGIRNSALR 537          
BLAST of mRNA_M-pyrifera_M_contig76897.18116.1 vs. uniprot
Match: H2U7X1_TAKRU (AA_permease_C domain-containing protein n=2 Tax=Takifugu rubripes TaxID=31033 RepID=H2U7X1_TAKRU)

HSP 1 Score: 69.7 bits (169), Expect = 1.610e-11
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    1 WAVGALAVLS---LLPFALLHRFPTPPENLPSTFQCPLVPTIPLLAIAINLTMLAGLKADAWFRLAIWTAIGIALYLLYGIRYSILRS 255
            W+V  + +L    L+  AL+ R   P     +TF  PLVP +P+L+I IN  ++  L  D W R AIW A+G+A+Y +YGIR+S  R+
Sbjct:  490 WSVALVCILGTIVLINTALIFR--QPQNGTKATFMMPLVPFLPILSIFINSYLMVQLGPDTWIRYAIWMAVGLAIYFIYGIRFSTQRT 575          
BLAST of mRNA_M-pyrifera_M_contig76897.18116.1 vs. uniprot
Match: A0A2P5NSV4_9HYPH (Amino acid permease n=1 Tax=Methylocystis sp. TaxID=1911079 RepID=A0A2P5NSV4_9HYPH)

HSP 1 Score: 69.3 bits (168), Expect = 2.130e-11
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    4 AVGALAVLSLLPFALLHRFPTPPENLPSTFQCPLVPTIPLLAIAINLTMLAGLKADAWFRLAIWTAIGIALYLLYGIRYS 243
            ++G LA  SL+  A++H   + P NL   F+ P +P IP+L I   L ++  L  D W RL IWT IG+A+YL YGI+++
Sbjct:  401 SIGTLAAFSLVCIAVIHLRKSHP-NLHRPFRAPGIPVIPILGIVSCLALMIALPLDTWLRLVIWTGIGLAIYLFYGIKHA 479          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76897.18116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1X7UZK0_AMPQE1.230e-1647.67AA_permease_C domain-containing protein n=2 Tax=Am... [more]
A0A812VIK8_9DINO2.260e-1651.25Slc7a2 protein (Fragment) n=1 Tax=Symbiodinium sp.... [more]
UPI0005C33C441.050e-1548.84uncharacterized protein LOC100636953 n=1 Tax=Amphi... [more]
A0A1X7UZ20_AMPQE2.060e-1549.41AA_permease_C domain-containing protein n=1 Tax=Am... [more]
L8GUL6_ACACA3.820e-1350.85AA_permease_C domain-containing protein (Fragment)... [more]
A0A4Y2AA19_ARAVE3.420e-1239.53Cationic amino acid transporter 4 n=1 Tax=Araneus ... [more]
L8GST8_ACACA8.170e-1241.30Cationic amino acid transporter, putative n=1 Tax=... [more]
L8GV49_ACACA8.680e-1250.85Amino acid permease n=1 Tax=Acanthamoeba castellan... [more]
H2U7X1_TAKRU1.610e-1140.91AA_permease_C domain-containing protein n=2 Tax=Ta... [more]
A0A2P5NSV4_9HYPH2.130e-1142.50Amino acid permease n=1 Tax=Methylocystis sp. TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76897contigM-pyrifera_M_contig76897:635..982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score79.0
Seed ortholog evalue1.7e-12
Seed eggNOG ortholog400682.PAC_15720191
KEGG koko:K13871
KEGG TC2.A.3.3
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.cationic amino acid transporter
EggNOG OGs38BM3@33154,3BA2V@33208,COG0531@1,KOG1286@2759
COG Functional cat.E
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko02000
Exons1
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816668.2165725-CDS-M-pyrifera_M_contig76897:634..9821622816668.2165725-CDS-M-pyrifera_M_contig76897:634..982Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76897 635..982 -
1692278108.4186606-CDS-M-pyrifera_M_contig76897:634..9821692278108.4186606-CDS-M-pyrifera_M_contig76897:634..982Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76897 635..982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76897.18116.1prot_M-pyrifera_M_contig76897.18116.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76897 635..982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76897.18116.1

>prot_M-pyrifera_M_contig76897.18116.1 ID=prot_M-pyrifera_M_contig76897.18116.1|Name=mRNA_M-pyrifera_M_contig76897.18116.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
WAVGALAVLSLLPFALLHRFPTPPENLPSTFQCPLVPTIPLLAIAINLTM
LAGLKADAWFRLAIWTAIGIALYLLYGIRYSILRSIQPEDNKISPTAQPK
HLQDTQDTPFLETLPQ
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mRNA from alignment at M-pyrifera_M_contig76897:635..982-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76897.18116.1 ID=mRNA_M-pyrifera_M_contig76897.18116.1|Name=mRNA_M-pyrifera_M_contig76897.18116.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig76897:635..982- (Macrocystis pyrifera P11B4 male)
TGGGCTGTTGGAGCTCTGGCAGTGCTCTCCCTCCTCCCATTCGCTCTCCT CCACCGGTTCCCAACGCCCCCAGAAAACCTACCATCCACATTCCAATGCC CGCTTGTCCCCACCATCCCTCTCCTCGCCATCGCAATCAACCTCACCATG CTCGCAGGACTCAAGGCTGATGCGTGGTTCAGACTCGCCATCTGGACTGC CATCGGCATCGCTCTCTACCTCCTCTACGGCATCCGCTACTCCATCCTCC GCTCCATCCAACCCGAGGACAACAAGATATCGCCCACCGCCCAACCAAAA CACCTCCAAGACACACAGGACACCCCGTTCCTCGAAACTCTCCCACAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76897:635..982-

>mRNA_M-pyrifera_M_contig76897.18116.1 ID=mRNA_M-pyrifera_M_contig76897.18116.1|Name=mRNA_M-pyrifera_M_contig76897.18116.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig76897:635..982- (Macrocystis pyrifera P11B4 male)
TGGGCTGTTGGAGCTCTGGCAGTGCTCTCCCTCCTCCCATTCGCTCTCCT
CCACCGGTTCCCAACGCCCCCAGAAAACCTACCATCCACATTCCAATGCC
CGCTTGTCCCCACCATCCCTCTCCTCGCCATCGCAATCAACCTCACCATG
CTCGCAGGACTCAAGGCTGATGCGTGGTTCAGACTCGCCATCTGGACTGC
CATCGGCATCGCTCTCTACCTCCTCTACGGCATCCGCTACTCCATCCTCC
GCTCCATCCAACCCGAGGACAACAAGATATCGCCCACCGCCCAACCAAAA
CACCTCCAAGACACACAGGACACCCCGTTCCTCGAAACTCTCCCACAATG
GGCTGTTGGAGCTCTGGCAGTGCTCTCCCTCCTCCCATTCGCTCTCCTCC
ACCGGTTCCCAACGCCCCCAGAAAACCTACCATCCACATTCCAATGCCCG
CTTGTCCCCACCATCCCTCTCCTCGCCATCGCAATCAACCTCACCATGCT
CGCAGGACTCAAGGCTGATGCGTGGTTCAGACTCGCCATCTGGACTGCCA
TCGGCATCGCTCTCTACCTCCTCTACGGCATCCGCTACTCCATCCTCCGC
TCCATCCAACCCGAGGACAACAAGATATCGCCCACCGCCCAACCAAAACA
CCTCCAAGACACACAGGACACCCCGTTCCTCGAAACTCTCCCACAA
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