mRNA_M-pyrifera_M_contig76895.18115.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76895.18115.1
Unique NamemRNA_M-pyrifera_M_contig76895.18115.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig76895.18115.1 vs. uniprot
Match: A0A3R7JQW2_9STRA (C-CAP/cofactor C-like domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JQW2_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 7.720e-20
Identity = 44/118 (37.29%), Postives = 64/118 (54.24%), Query Frame = 1 
Query:    1 QPFELQDLDSCTVVLGDVTSQVTADGLRNCRILVGGCSGAVFLRDCRDCVVVVAAHQVRLXXXXXXXXSVCSMEDIALENCNRVSFAPFCAAFPGASAVFSAAGLEVGRGKWDAVFDF 354
            QPF+L DL+ CT++L D   QV  D L NCR+ +G  S +VFLR+C +C   +A  Q+R          + S+ D  +E   ++ FAPF  A+ G    F+ A LE     W  ++DF
Sbjct:   46 QPFDLSDLEGCTIMLLDQIDQVQVDNLTNCRVFIGPSSESVFLRNCTNCTFTIACKQLRTRDCSGCSTYLYSLTDPIIETSQQMQFAPFNGAYCGLGRHFADARLEPANNHWSQIYDF 163
[Close]
BLAST of mRNA_M-pyrifera_M_contig76895.18115.1 vs. uniprot
Match: H3GSA8_PHYRM (Dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GSA8_PHYRM)

HSP 1 Score: 93.6 bits (231), Expect = 1.010e-19
Identity = 48/118 (40.68%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:    1 QPFELQDLDSCTVVLGDVTSQVTADGLRNCRILVGGCSGAVFLRDCRDCVVVVAAHQVRLXXXXXXXXSVCSMEDIALENCNRVSFAPFCAAFPGASAVFSAAGLEVGRGKWDAVFDF 354
            QPF+L DL+ CTV+L D  +QV  D L NCR+ VG  S +VF+R+C +CV  +A  Q+R          + S+ D  +E   +++FAPF  A+ G    F  AGLE     W  V+DF
Sbjct:   46 QPFDLSDLEGCTVLLLDHINQVQIDNLSNCRVFVGPSSESVFVRNCTNCVFTIACKQLRTRDCSGCNIYLYSLTDPIIETSQQMTFAPFNGAYCGIERNFKDAGLEPANNHWSQVYDF 163
[Close]
BLAST of mRNA_M-pyrifera_M_contig76895.18115.1 vs. uniprot
Match: A0A2P4XVN9_9STRA (Dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XVN9_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.480e-19
Identity = 47/118 (39.83%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:    1 QPFELQDLDSCTVVLGDVTSQVTADGLRNCRILVGGCSGAVFLRDCRDCVVVVAAHQVRLXXXXXXXXSVCSMEDIALENCNRVSFAPFCAAFPGASAVFSAAGLEVGRGKWDAVFDF 354
            QPF++ DL+ CTV+L D  +QV  D L NCR+ VG  S AVF+R+C +CV  +A  Q+R          + S+ D  +E   +++FAPF  A+ G    F+ A LE     W  V+DF
Sbjct:   46 QPFDISDLEGCTVMLLDHINQVQIDNLSNCRVFVGPSSEAVFVRNCTNCVFTIACKQLRTRDCSSCSIYLYSLTDPIIETSQQITFAPFNGAYCGIERNFTDAHLEPANNHWSQVYDF 163
[Close]
BLAST of mRNA_M-pyrifera_M_contig76895.18115.1 vs. uniprot
Match: A0A329SGU1_9STRA (C-CAP/cofactor C-like domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SGU1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.510e-19
Identity = 48/122 (39.34%), Postives = 68/122 (55.74%), Query Frame = 1 
Query:    1 QPFELQDLDSCTVVLGDVTSQVTADGLRNCRILVGGCSGAVFLRDCRDCVVVVAAHQVRLXXXXXXXXSVCSMEDIALENCNRVSFAPFCAAFPGASAVFSAAGLEVGRGKWDAVFDFTPGE 366
            QPF+L DL+ CTV+L D  +QV  D L NCR+ VG  S +VF+R+C +CV  +A  Q+R          + S+ D  +E   +++FAPF  A+ G    FS A LE     W  ++DF   E
Sbjct:   46 QPFDLSDLEGCTVMLLDHINQVQIDNLSNCRVFVGPSSESVFVRNCTNCVFTIACKQLRTRDCSGCSLYLYSLTDPIIETSQQMAFAPFNGAYCGIERNFSDARLEPTNNHWSQLYDFNDPE 167
[Close]
BLAST of mRNA_M-pyrifera_M_contig76895.18115.1 vs. uniprot
Match: A0A8J5MHL8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MHL8_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 6.500e-19
Identity = 48/122 (39.34%), Postives = 68/122 (55.74%), Query Frame = 1 
Query:    1 QPFELQDLDSCTVVLGDVTSQVTADGLRNCRILVGGCSGAVFLRDCRDCVVVVAAHQVRLXXXXXXXXSVCSMEDIALENCNRVSFAPFCAAFPGASAVFSAAGLEVGRGKWDAVFDFTPGE 366
            QPF+L DL+ CTV+L D  +QV  D L NCR+ VG  S +VF+R+C +CV  +A  Q+R          + S+ D  +E   +++FAPF  A+ G    FS A LE     W  ++DF   E
Sbjct:   46 QPFDLSDLEGCTVMLLDYINQVQIDSLSNCRVFVGPSSESVFVRNCTNCVFTIACKQLRTRDCSGCSLYLYSLTDPIIETSQQMAFAPFNGAYCGIERNFSDARLEPTNNHWSQLYDFNDPE 167
[Close]
BLAST of mRNA_M-pyrifera_M_contig76895.18115.1 vs. uniprot
Match: A0A7S1C1T6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C1T6_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.140e-18
Identity = 50/122 (40.98%), Postives = 68/122 (55.74%), Query Frame = 1 
Query:    1 QPFELQDLDSCTVVLGDVTSQVTADGLRNCRILVGGCSGAVFLRDCRDCVVVVAAHQVRLXXXXXXXXSVCSMEDIALENCNRVSFAPFCAAFPGASAVFSAAGLEVGRGKWDAVFDFTPGE 366
            QPF L+ LD CTV+L D + QV  D ++N ++ +G    +VF+RDC D V  +A  Q+R XXX      + S  D  +E   R+ FAPF  A+PG    F A+ L+     W  VFDF  GE
Sbjct:   34 QPFNLERLDDCTVMLLDYSDQVQVDFVKNSKVFIGPSCESVFVRDCSDTVFTIACKQLRTXXXSNCTFFLYSQTDPIIETSTRMRFAPFNGAYPGIEDGFRASRLDPVNNHWKNVFDFNKGE 155
[Close]
BLAST of mRNA_M-pyrifera_M_contig76895.18115.1 vs. uniprot
Match: D0NPG8_PHYIT (C-CAP/cofactor C-like domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NPG8_PHYIT)

HSP 1 Score: 88.6 bits (218), Expect = 2.590e-18
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:    1 QPFELQDLDSCTVVLGDVTSQVTADGLRNCRILVGGCSGAVFLRDCRDCVVVVAAHQVRLXXXXXXXXSVCSMEDIALENCNRVSFAPFCAAFPGASAVFSAAGLEVGRGKWDAVFDF 354
            QPF++ DL+ CTV+L D  +QV  D L NCR+ VG  S +VF+R+C +CV  +A  Q+R          + S+ D  +E   +++FAPF  A+ G    F+ A LE     W  ++DF
Sbjct:   46 QPFDVSDLEGCTVMLLDHINQVQIDNLANCRVFVGPSSESVFVRNCSNCVFTIACKQLRTRDCSGCSIYLYSLTDPIIETSQQMTFAPFNGAYCGIERNFTDARLEPANNHWSQLYDF 163
[Close]
BLAST of mRNA_M-pyrifera_M_contig76895.18115.1 vs. uniprot
Match: D0N6N9_PHYIT (Palmitoyltransferase n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N6N9_PHYIT)

HSP 1 Score: 88.6 bits (218), Expect = 5.500e-18
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:    1 QPFELQDLDSCTVVLGDVTSQVTADGLRNCRILVGGCSGAVFLRDCRDCVVVVAAHQVRLXXXXXXXXSVCSMEDIALENCNRVSFAPFCAAFPGASAVFSAAGLEVGRGKWDAVFDF 354
            QPF++ DL+ CTV+L D  +QV  D L NCR+ VG  S +VF+R+C +CV  +A  Q+R          + S+ D  +E   +++FAPF  A+ G    F+ A LE     W  ++DF
Sbjct:   46 QPFDVSDLEGCTVMLLDHINQVQIDNLANCRVFVGPSSESVFVRNCSNCVFTIACKQLRTRDCSGCSIYLYSLTDPIIETSQQMTFAPFNGAYCGIERNFTDARLEPANNHWSQLYDF 163
[Close]
BLAST of mRNA_M-pyrifera_M_contig76895.18115.1 vs. uniprot
Match: A0A6A4F3U8_9STRA (C-CAP/cofactor C-like domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F3U8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.140e-17
Identity = 47/119 (39.50%), Postives = 67/119 (56.30%), Query Frame = 1 
Query:    1 QPFELQDLDSCTVVLGDVTSQVTADGLRNCRILVGGCSGAVFLRDCRDCVVVVAAHQVRLXXXXXXXXSVCSMEDIALENCNRV-SFAPFCAAFPGASAVFSAAGLEVGRGKWDAVFDF 354
            QPF+L DLD CTV+L D  +QV  D L NCR+ +G  S +VF+R+C +CV  +A  Q+R          + S+ D  +E   ++ +FAPF  A+ G    F+ A LE     W  V+DF
Sbjct:   46 QPFDLSDLDGCTVMLLDHINQVQIDNLSNCRVFIGPSSESVFVRNCSNCVFTIACKQLRTRDCSSCAIYLYSLTDPIIETSQQMMTFAPFNGAYCGIERNFADARLEPTNNHWSQVYDF 164
[Close]
BLAST of mRNA_M-pyrifera_M_contig76895.18115.1 vs. uniprot
Match: A0A7S2NXE0_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2NXE0_9DINO)

HSP 1 Score: 80.9 bits (198), Expect = 1.020e-15
Identity = 44/119 (36.97%), Postives = 64/119 (53.78%), Query Frame = 1 
Query:    1 QPFELQDLDSCTVVLGDVTSQVTADGLRNCRILVGGCSGAVFLRDCRDCVVVVAAHQVRLXXXXXXXXSVCSMEDIALENCNRVSFAPFCAAFPGASAVFSAAGLEVGRGKWDAVFDFT 357
            Q  +L  L  C V L   T+QV  D  +   ILVG C  +VF+RDC DC + +AA Q+R          + S  +  +E+   ++FAP+CA++PG  A F     +  R  W+A+FDFT
Sbjct:   79 QQVQLDTLQDCEVYLCTKTAQVFVDCCKGSVILVGPCESSVFVRDCEDCEIWLAAQQLRTRDCKRCKFYLYSKTEPIIESSEDLAFAPWCASYPGCCADFKDFRFDPQRNFWNALFDFT 197
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76895.18115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3R7JQW2_9STRA7.720e-2037.29C-CAP/cofactor C-like domain-containing protein n=... [more]
H3GSA8_PHYRM1.010e-1940.68Dolichyl-phosphate beta-glucosyltransferase n=1 Ta... [more]
A0A2P4XVN9_9STRA3.480e-1939.83Dolichyl-phosphate beta-glucosyltransferase n=1 Ta... [more]
A0A329SGU1_9STRA4.510e-1939.34C-CAP/cofactor C-like domain-containing protein n=... [more]
A0A8J5MHL8_9STRA6.500e-1939.34Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A7S1C1T6_9STRA1.140e-1840.98Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
D0NPG8_PHYIT2.590e-1838.14C-CAP/cofactor C-like domain-containing protein n=... [more]
D0N6N9_PHYIT5.500e-1838.14Palmitoyltransferase n=1 Tax=Phytophthora infestan... [more]
A0A6A4F3U8_9STRA1.140e-1739.50C-CAP/cofactor C-like domain-containing protein n=... [more]
A0A7S2NXE0_9DINO1.020e-1536.97Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76895contigM-pyrifera_M_contig76895:380..754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue7.1e-17
Seed eggNOG ortholog164328.Phyra79866
Preferred nameALG5
KEGG rclassRC00005,RC02795
KEGG koko:K00729,ko:K03027,ko:K18272,ko:K18932
KEGG ReactionR00435,R00441,R00442,R00443,R01005
KEGG Pathwayko00230,ko00240,ko00510,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map00510,map01100,map03020,map04623,map05169
KEGG ModuleM00055,M00181,M00182
Hectar predicted targeting categoryother localisation
GOsGO:0001667,GO:0001703,GO:0001704,GO:0001707,GO:0003002,GO:0003674,GO:0003824,GO:0004576,GO:0004581,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006493,GO:0006629,GO:0006807,GO:0006928,GO:0006996,GO:0007009,GO:0007029,GO:0007030,GO:0007043,GO:0007275,GO:0007368,GO:0007369,GO:0007389,GO:0007498,GO:0007509,GO:0008078,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009888,GO:0009953,GO:0009987,GO:0010004,GO:0010256,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016477,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0019991,GO:0022607,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0034329,GO:0034330,GO:0034645,GO:0035251,GO:0036211,GO:0040003,GO:0040011,GO:0042074,GO:0042175,GO:0042335,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043297,GO:0043412,GO:0043413,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045216,GO:0046527,GO:0048332,GO:0048598,GO:0048646,GO:0048729,GO:0048856,GO:0048870,GO:0051179,GO:0051674,GO:0061024,GO:0070085,GO:0071704,GO:0071840,GO:0090130,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Tubulin binding cofactor C
EggNOG OGs3QCRW@4776,COG0463@1,COG5273@1,KOG1311@2759,KOG2512@1,KOG2512@2759,KOG2977@2759
EC2.3.1.225,2.4.1.117
COG Functional cat.O
CAZyGT2
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko01003,ko03021,ko04147
Exons1
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816668.1812582-CDS-M-pyrifera_M_contig76895:379..7541622816668.1812582-CDS-M-pyrifera_M_contig76895:379..754Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76895 380..754 +
1692278108.4067776-CDS-M-pyrifera_M_contig76895:379..7541692278108.4067776-CDS-M-pyrifera_M_contig76895:379..754Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76895 380..754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76895.18115.1prot_M-pyrifera_M_contig76895.18115.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76895 380..754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76895.18115.1

>prot_M-pyrifera_M_contig76895.18115.1 ID=prot_M-pyrifera_M_contig76895.18115.1|Name=mRNA_M-pyrifera_M_contig76895.18115.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
QPFELQDLDSCTVVLGDVTSQVTADGLRNCRILVGGCSGAVFLRDCRDCV
VVVAAHQVRLQDCVDCVVSVCSMEDIALENCNRVSFAPFCAAFPGASAVF
SAAGLEVGRGKWDAVFDFTPGEGGE
back to top

mRNA from alignment at M-pyrifera_M_contig76895:380..754+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76895.18115.1 ID=mRNA_M-pyrifera_M_contig76895.18115.1|Name=mRNA_M-pyrifera_M_contig76895.18115.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig76895:380..754+ (Macrocystis pyrifera P11B4 male)
CAACCATTCGAGCTGCAAGATTTGGACTCTTGTACAGTAGTGTTGGGCGA
TGTGACGAGTCAGGTGACTGCGGACGGGCTTCGCAATTGCCGCATTTTGG
TTGGCGGTTGCTCTGGCGCGGTGTTTTTGCGCGATTGCAGGGACTGTGTG
GTGGTAGTGGCAGCGCACCAGGTTCGTCTGCAAGACTGTGTGGACTGCGT
GGTGTCAGTGTGCTCGATGGAAGACATTGCCCTGGAGAATTGCAACCGAG
TTTCATTTGCACCCTTTTGCGCCGCCTTCCCTGGGGCTTCTGCGGTTTTC
TCGGCTGCCGGGTTGGAAGTGGGTCGGGGCAAGTGGGATGCGGTGTTCGA
CTTCACCCCTGGGGAGGGAGGGGAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig76895:380..754+

>mRNA_M-pyrifera_M_contig76895.18115.1 ID=mRNA_M-pyrifera_M_contig76895.18115.1|Name=mRNA_M-pyrifera_M_contig76895.18115.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig76895:380..754+ (Macrocystis pyrifera P11B4 male)
CAACCATTCGAGCTGCAAGATTTGGACTCTTGTACAGTAGTGTTGGGCGA
TGTGACGAGTCAGGTGACTGCGGACGGGCTTCGCAATTGCCGCATTTTGG
TTGGCGGTTGCTCTGGCGCGGTGTTTTTGCGCGATTGCAGGGACTGTGTG
GTGGTAGTGGCAGCGCACCAGGTTCGTCTGCAAGACTGTGTGGACTGCGT
GGTGTCAGTGTGCTCGATGGAAGACATTGCCCTGGAGAATTGCAACCGAG
TTTCATTTGCACCCTTTTGCGCCGCCTTCCCTGGGGCTTCTGCGGTTTTC
TCGGCTGCCGGGTTGGAAGTGGGTCGGGGCAAGTGGGATGCGGTGTTCGA
CTTCACCCCTGGGGAGGGAGGGGAGCAACCATTCGAGCTGCAAGATTTGG
ACTCTTGTACAGTAGTGTTGGGCGATGTGACGAGTCAGGTGACTGCGGAC
GGGCTTCGCAATTGCCGCATTTTGGTTGGCGGTTGCTCTGGCGCGGTGTT
TTTGCGCGATTGCAGGGACTGTGTGGTGGTAGTGGCAGCGCACCAGGTTC
GTCTGCAAGACTGTGTGGACTGCGTGGTGTCAGTGTGCTCGATGGAAGAC
ATTGCCCTGGAGAATTGCAACCGAGTTTCATTTGCACCCTTTTGCGCCGC
CTTCCCTGGGGCTTCTGCGGTTTTCTCGGCTGCCGGGTTGGAAGTGGGTC
GGGGCAAGTGGGATGCGGTGTTCGACTTCACCCCTGGGGAGGGAGGGGAG
back to top