mRNA_M-pyrifera_M_contig76891.18113.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76891.18113.1
Unique NamemRNA_M-pyrifera_M_contig76891.18113.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76891.18113.1 vs. uniprot
Match: A0A5A8DS19_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DS19_CAFRO)

HSP 1 Score: 176 bits (445), Expect = 6.360e-53
Identity = 80/112 (71.43%), Postives = 90/112 (80.36%), Query Frame = 1
Query:    7 RTVVGDAEALPFADNAFDTVVDTFGLCSMDSPVSALREMRRVCKPDGKILLLEHGRGTWDIVNYLLDRNAQKHADKFGCWYNRDIPALIAASGLRVVSRTRWHFGTTLVYEC 342
            R V   AEALP  D  FDTV DTFGLCSMD PV AL EM+RVCKP GKILLLEHG GTW+ +N LL+R+A KH  K+GCWYNRD+ A++ ASGLRVVSR+RWHFGTT VYEC
Sbjct:  136 RVVKASAEALPLDDGEFDTVADTFGLCSMDDPVGALLEMQRVCKPGGKILLLEHGIGTWEFINGLLERSAPKHFAKWGCWYNRDVDAIVKASGLRVVSRSRWHFGTTYVYEC 247          
BLAST of mRNA_M-pyrifera_M_contig76891.18113.1 vs. uniprot
Match: A0A7R9UFL9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFL9_9STRA)

HSP 1 Score: 140 bits (354), Expect = 2.410e-40
Identity = 63/104 (60.58%), Postives = 84/104 (80.77%), Query Frame = 1
Query:   16 VGDAEALPFADNAFDTVVDTFGLCSMDSPVSALREMRRVCKPDGKILLLEHGRGTWDIVNYLLDRNAQKHADKFGCWYNRDIPALIAASGLRVVSRTRWHFGTT 327
            V DA ALPF DN+FDTVVDTFGLCS++ PV A++EM+RVCKP+G+ILLLEHGR  +D +  L D+NA+KHA ++GC++N+DI A++  + L V +R  WHFGTT
Sbjct:   54 VADAHALPFPDNSFDTVVDTFGLCSIEDPVKAVQEMQRVCKPEGQILLLEHGRSPYDWLAKLQDKNAEKHAQRWGCYWNKDIGAILQKAELDVKARYDWHFGTT 157          
BLAST of mRNA_M-pyrifera_M_contig76891.18113.1 vs. uniprot
Match: A0A7S1U426_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U426_9STRA)

HSP 1 Score: 139 bits (350), Expect = 3.200e-40
Identity = 63/104 (60.58%), Postives = 82/104 (78.85%), Query Frame = 1
Query:   16 VGDAEALPFADNAFDTVVDTFGLCSMDSPVSALREMRRVCKPDGKILLLEHGRGTWDIVNYLLDRNAQKHADKFGCWYNRDIPALIAASGLRVVSRTRWHFGTT 327
            V DA  LP+AD++FDTVVDTFGLCSM+ PV A+REM RVCKP G ILLLEHGR  +D +  + D++A+KHA ++GC++N+DI  ++ A+GL V SR  WHFGTT
Sbjct:   17 VADAHQLPYADDSFDTVVDTFGLCSMEDPVRAVREMMRVCKPGGAILLLEHGRSPYDWLAKIQDKDAEKHAQRWGCYWNKDIGGILDAAGLDVQSRWDWHFGTT 120          
BLAST of mRNA_M-pyrifera_M_contig76891.18113.1 vs. uniprot
Match: A0A7S1QTC6_NEODS (Hypothetical protein (Fragment) n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1QTC6_NEODS)

HSP 1 Score: 140 bits (354), Expect = 3.730e-39
Identity = 62/104 (59.62%), Postives = 79/104 (75.96%), Query Frame = 1
Query:   16 VGDAEALPFADNAFDTVVDTFGLCSMDSPVSALREMRRVCKPDGKILLLEHGRGTWDIVNYLLDRNAQKHADKFGCWYNRDIPALIAASGLRVVSRTRWHFGTT 327
            V  +E+LPF DN+FDTVVD FGLCS D P  ALREM RVCKPDG+++L+EHGRGTW  +N+ LD+ A +HA  +GCW+NRDI   +  +G++ VSR   HFGTT
Sbjct:  163 VCSSESLPFPDNSFDTVVDVFGLCSYDQPTLALREMSRVCKPDGQLVLIEHGRGTWARINWYLDKWAPRHASSWGCWWNRDIRRYLRLAGIQTVSREEKHFGTT 266          
BLAST of mRNA_M-pyrifera_M_contig76891.18113.1 vs. uniprot
Match: B7FUN7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FUN7_PHATC)

HSP 1 Score: 139 bits (350), Expect = 1.210e-38
Identity = 67/115 (58.26%), Postives = 81/115 (70.43%), Query Frame = 1
Query:    1 KWRTVVGDAEALPFADNAFDTVVDTFGLCSMDSPVSALREMRRVCKPDGKILLLEHGRG-TWDIVNYLLDRNAQKHADKFGCWYNRDIPALIAASGLRVVSRTRWHFGTTLVYEC 342
            ++  +  D+  L   +NAFDTVVDTFGLCS D PV  L+EM RVCKP GKILLLEHGR  TWD V   LD++A++HA  +GC +NRD+ A+IAASGL V    RWHFGTT    C
Sbjct:  143 RFAVIEADSARLSLPENAFDTVVDTFGLCSYDDPVLVLKEMARVCKPSGKILLLEHGRSKTWDFVTDHLDKHAEQHAANWGCVWNRDLDAVIAASGLNVRVLNRWHFGTTYYIVC 257          
BLAST of mRNA_M-pyrifera_M_contig76891.18113.1 vs. uniprot
Match: G0U1D7_TRYVY (Uncharacterized protein n=1 Tax=Trypanosoma vivax (strain Y486) TaxID=1055687 RepID=G0U1D7_TRYVY)

HSP 1 Score: 134 bits (337), Expect = 8.360e-38
Identity = 60/100 (60.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:   28 EALPFADNAFDTVVDTFGLCSMDSPVSALREMRRVCKPDGKILLLEHGRGTWDIVNYLLDRNAQKHADKFGCWYNRDIPALIAASGLRVVSRTRWHFGTT 327
            E LPF+DN+FD +V+ FGLCS D PV ALREM RVCKPDG +LLLEHG+G W+ +N  LD+ A +HA  +GCW+NRDI   I  +GL +V R   HFGTT
Sbjct:   44 EQLPFSDNSFDVIVEMFGLCSYDDPVRALREMSRVCKPDGHLLLLEHGKGRWERINGYLDKWAPRHAKVWGCWWNRDIRRCIRLAGLTIVKREERHFGTT 143          
BLAST of mRNA_M-pyrifera_M_contig76891.18113.1 vs. uniprot
Match: G0USD6_TRYCI (Uncharacterized protein n=1 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=G0USD6_TRYCI)

HSP 1 Score: 133 bits (335), Expect = 9.020e-38
Identity = 64/101 (63.37%), Postives = 74/101 (73.27%), Query Frame = 1
Query:   25 AEALPFADNAFDTVVDTFGLCSMDSPVSALREMRRVCKPDGKILLLEHGRGTWDIVNYLLDRNAQKHADKFGCWYNRDIPALIAASGLRVVSRTRWHFGTT 327
            AE +PF DN+FDTVVD FGLCS D PV ALREM RVCKP G +LLLEHG+G    VN  LD+ AQ+HA+ +GCW+NRDI   I  SGL VV +   HFGTT
Sbjct:   21 AEQMPFMDNSFDTVVDMFGLCSYDDPVRALREMSRVCKPGGHLLLLEHGKGNCCRVNNYLDKWAQRHANVWGCWWNRDIQRYIRLSGLTVVKKEEKHFGTT 121          
BLAST of mRNA_M-pyrifera_M_contig76891.18113.1 vs. uniprot
Match: A0A7S2DMV5_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2DMV5_9DINO)

HSP 1 Score: 133 bits (334), Expect = 1.580e-37
Identity = 60/115 (52.17%), Postives = 84/115 (73.04%), Query Frame = 1
Query:    7 RTVVGDAEALPFADNAFDTVVDTFGLCSMDSPVSALREMRRVCKPDGKILLLEHGRGTWDIVNYLLDRNAQKHADKFGCWYNRDIPALIAASGLRVVSRTRWHFGTTLVYECARN 351
            R  +  ++ L F D +FD+VVDTFG+CS +SPV +LREMRRV K DG++LLLEHG  +W+++  LL+R AQ+H +KFGC+ NR+I AL+  +GL +V   R HFGTT +  C R+
Sbjct:   28 RLKLASSQKLDFPDCSFDSVVDTFGVCSFESPVESLREMRRVVKEDGQVLLLEHGASSWELMQGLLNRGAQRHVEKFGCYPNRNIRALVEEAGLHIVKDERKHFGTTYLLVCKRS 142          
BLAST of mRNA_M-pyrifera_M_contig76891.18113.1 vs. uniprot
Match: A0A0S4KJ69_BODSA (Methyltransferase, putative (Fragment) n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4KJ69_BODSA)

HSP 1 Score: 139 bits (349), Expect = 1.930e-37
Identity = 64/101 (63.37%), Postives = 77/101 (76.24%), Query Frame = 1
Query:   25 AEALPFADNAFDTVVDTFGLCSMDSPVSALREMRRVCKPDGKILLLEHGRGTWDIVNYLLDRNAQKHADKFGCWYNRDIPALIAASGLRVVSRTRWHFGTT 327
            AE LPF  N+FDTVVD FGLCS D PV AL EM RVCKP+GKILLLEHG+G+WD +N  LD+ A +HA  +GCW+NRDI   +  SG++VVSR   HFGT+
Sbjct:  231 AEKLPFPTNSFDTVVDMFGLCSFDDPVKALLEMSRVCKPEGKILLLEHGKGSWDKLNNYLDKWAPRHASMWGCWWNRDIRRYLRLSGVQVVSREEKHFGTS 331          
BLAST of mRNA_M-pyrifera_M_contig76891.18113.1 vs. uniprot
Match: A0A0L1KZG9_9EUGL (Uncharacterized protein n=1 Tax=Perkinsela sp. CCAP 1560/4 TaxID=1314962 RepID=A0A0L1KZG9_9EUGL)

HSP 1 Score: 135 bits (340), Expect = 3.230e-37
Identity = 59/107 (55.14%), Postives = 76/107 (71.03%), Query Frame = 1
Query:   22 DAEALPFADNAFDTVVDTFGLCSMDSPVSALREMRRVCKPDGKILLLEHGRGTWDIVNYLLDRNAQKHADKFGCWYNRDIPALIAASGLRVVSRTRWHFGTTLVYEC 342
            D+E LPFAD+ FDTV+DTFGLCS D P+ ALREM RVCKP+GK+LLLEHG+G    +N  LD+ A  HA  +GCW+NRDI  ++  +G+  +     HFGTT +  C
Sbjct:  137 DSEVLPFADDTFDTVIDTFGLCSYDEPIQALREMSRVCKPEGKLLLLEHGKGNKSWLNNYLDKMAPSHALNWGCWWNRDIQRMVRLAGIECIEEKNMHFGTTQMRIC 243          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76891.18113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DS19_CAFRO6.360e-5371.43Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A7R9UFL9_9STRA2.410e-4060.58Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1U426_9STRA3.200e-4060.58Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1QTC6_NEODS3.730e-3959.62Hypothetical protein (Fragment) n=1 Tax=Neobodo de... [more]
B7FUN7_PHATC1.210e-3858.26Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
G0U1D7_TRYVY8.360e-3860.00Uncharacterized protein n=1 Tax=Trypanosoma vivax ... [more]
G0USD6_TRYCI9.020e-3863.37Uncharacterized protein n=1 Tax=Trypanosoma congol... [more]
A0A7S2DMV5_9DINO1.580e-3752.17Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A0S4KJ69_BODSA1.930e-3763.37Methyltransferase, putative (Fragment) n=1 Tax=Bod... [more]
A0A0L1KZG9_9EUGL3.230e-3755.14Uncharacterized protein n=1 Tax=Perkinsela sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76891contigM-pyrifera_M_contig76891:637..990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.8
Seed ortholog evalue8.1e-31
Seed eggNOG ortholog2850.Phatr34078
KEGG koko:K17803
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0031967,GO:0031975,GO:0032259,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2XCPM@2836,COG0500@1,KOG4300@2759
COG Functional cat.Q
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Exons1
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816668.115284-CDS-M-pyrifera_M_contig76891:636..9901622816668.115284-CDS-M-pyrifera_M_contig76891:636..990Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76891 637..990 -
1692278108.3716314-CDS-M-pyrifera_M_contig76891:636..9901692278108.3716314-CDS-M-pyrifera_M_contig76891:636..990Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76891 637..990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76891.18113.1prot_M-pyrifera_M_contig76891.18113.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76891 637..990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76891.18113.1

>prot_M-pyrifera_M_contig76891.18113.1 ID=prot_M-pyrifera_M_contig76891.18113.1|Name=mRNA_M-pyrifera_M_contig76891.18113.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
KWRTVVGDAEALPFADNAFDTVVDTFGLCSMDSPVSALREMRRVCKPDGK
ILLLEHGRGTWDIVNYLLDRNAQKHADKFGCWYNRDIPALIAASGLRVVS
RTRWHFGTTLVYECARN*
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mRNA from alignment at M-pyrifera_M_contig76891:637..990-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76891.18113.1 ID=mRNA_M-pyrifera_M_contig76891.18113.1|Name=mRNA_M-pyrifera_M_contig76891.18113.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig76891:637..990- (Macrocystis pyrifera P11B4 male)
AAGTGGAGAACTGTAGTGGGGGATGCAGAAGCTCTCCCATTTGCTGACAA CGCCTTTGACACTGTTGTAGATACGTTTGGTCTTTGTTCGATGGATTCTC CTGTATCTGCATTACGTGAAATGCGTCGAGTATGCAAACCTGATGGGAAA ATTCTCCTGCTGGAACATGGACGTGGAACATGGGACATTGTGAACTACTT GTTGGACAGAAATGCGCAAAAGCATGCAGACAAATTTGGATGCTGGTACA ATCGCGATATTCCAGCACTCATCGCAGCATCCGGCCTTCGTGTTGTCTCT AGAACACGATGGCACTTTGGTACCACCCTTGTCTATGAATGTGCACGAAA TTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76891:637..990-

>mRNA_M-pyrifera_M_contig76891.18113.1 ID=mRNA_M-pyrifera_M_contig76891.18113.1|Name=mRNA_M-pyrifera_M_contig76891.18113.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig76891:637..990- (Macrocystis pyrifera P11B4 male)
AAGTGGAGAACTGTAGTGGGGGATGCAGAAGCTCTCCCATTTGCTGACAA
CGCCTTTGACACTGTTGTAGATACGTTTGGTCTTTGTTCGATGGATTCTC
CTGTATCTGCATTACGTGAAATGCGTCGAGTATGCAAACCTGATGGGAAA
ATTCTCCTGCTGGAACATGGACGTGGAACATGGGACATTGTGAACTACTT
GTTGGACAGAAATGCGCAAAAGCATGCAGACAAATTTGGATGCTGGTACA
ATCGCGATATTCCAGCACTCATCGCAGCATCCGGCCTTCGTGTTGTCTCT
AGAACACGATGGCACTTTGGTACCACCCTTGTCTATGAATGTGCACGAAA
TTAGAAGTGGAGAACTGTAGTGGGGGATGCAGAAGCTCTCCCATTTGCTG
ACAACGCCTTTGACACTGTTGTAGATACGTTTGGTCTTTGTTCGATGGAT
TCTCCTGTATCTGCATTACGTGAAATGCGTCGAGTATGCAAACCTGATGG
GAAAATTCTCCTGCTGGAACATGGACGTGGAACATGGGACATTGTGAACT
ACTTGTTGGACAGAAATGCGCAAAAGCATGCAGACAAATTTGGATGCTGG
TACAATCGCGATATTCCAGCACTCATCGCAGCATCCGGCCTTCGTGTTGT
CTCTAGAACACGATGGCACTTTGGTACCACCCTTGTCTATGAATGTGCAC
GAAATTAG
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