mRNA_M-pyrifera_M_contig76884.18110.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76884.18110.1
Unique NamemRNA_M-pyrifera_M_contig76884.18110.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76884.18110.1 vs. uniprot
Match: A0A351ERC1_9ACTN (Taurine dioxygenase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351ERC1_9ACTN)

HSP 1 Score: 127 bits (318), Expect = 2.870e-36
Identity = 59/76 (77.63%), Postives = 67/76 (88.16%), Query Frame = 1
Query:    1 YASFRVSTLTPHLGAEVEGLDLAVPLDEQQRADVVQAFADWGVLVFRDQELDREAHKAFGRHFGELHVHPMNFARK 228
            Y SF VSTLTPHLGA+VEGLDL+ PLD  Q  D+ QAFADWGVLVFR+Q LDREAHKAFGR+FG+LHVHPMN++RK
Sbjct:   21 YDSFMVSTLTPHLGAQVEGLDLSQPLDAPQLHDLHQAFADWGVLVFRNQHLDREAHKAFGRYFGDLHVHPMNYSRK 96          
BLAST of mRNA_M-pyrifera_M_contig76884.18110.1 vs. uniprot
Match: A0A6P2BCS0_9GAMM (Taurine dioxygenase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6P2BCS0_9GAMM)

HSP 1 Score: 113 bits (283), Expect = 5.190e-29
Identity = 52/75 (69.33%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    1 YASFRVSTLTPHLGAEVEGLDLAVPLDEQQRADVVQAFADWGVLVFRDQELDREAHKAFGRHFGELHVHPMNFAR 225
            Y +F V+ LTPHLGAE+ G+DL+  L  +  AD+ +AFADWGVLVFR+Q LDREAHKAFGRHFG LHVHPMN AR
Sbjct:   18 YGTFEVTPLTPHLGAEIRGVDLSQTLAGELLADLRRAFADWGVLVFREQHLDREAHKAFGRHFGHLHVHPMNHAR 92          
BLAST of mRNA_M-pyrifera_M_contig76884.18110.1 vs. uniprot
Match: A0A7C1UHK1_9ACTN (Taurine dioxygenase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1UHK1_9ACTN)

HSP 1 Score: 110 bits (276), Expect = 4.750e-28
Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 YASFRVSTLTPHLGAEVEGLDLAVPLDEQQRADVVQAFADWGVLVFRDQELDREAHKAFGRHFGELHVHPMNFAR 225
            Y +  V TLTPH+GAEV G+DL+ PL   Q AD+ +A+ADW VLVFRDQ+LDRE HKAFGRHFG LHVHPMN  R
Sbjct:   12 YETISVKTLTPHIGAEVRGVDLSEPLSPAQVADIRRAWADWQVLVFRDQQLDREQHKAFGRHFGTLHVHPMNHFR 86          
BLAST of mRNA_M-pyrifera_M_contig76884.18110.1 vs. uniprot
Match: A0A3C2AYP6_9ACTN (Taurine dioxygenase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2AYP6_9ACTN)

HSP 1 Score: 109 bits (273), Expect = 2.000e-27
Identity = 51/75 (68.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    1 YASFRVSTLTPHLGAEVEGLDLAVPLDEQQRADVVQAFADWGVLVFRDQELDREAHKAFGRHFGELHVHPMNFAR 225
            Y  F V  LTPH+GAEV+GLDL+ PLD    A + QA+ADW VLVFRDQ LDREAHK FGR FG LH HPMN+AR
Sbjct:   31 YDGFTVQPLTPHIGAEVDGLDLSQPLDPDVAASLRQAWADWSVLVFRDQHLDREAHKRFGRTFGTLHTHPMNYAR 105          
BLAST of mRNA_M-pyrifera_M_contig76884.18110.1 vs. uniprot
Match: A0A6L7XW00_9GAMM (Taurine dioxygenase n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7XW00_9GAMM)

HSP 1 Score: 105 bits (263), Expect = 4.400e-26
Identity = 46/71 (64.79%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    1 YASFRVSTLTPHLGAEVEGLDLAVPLDEQQRADVVQAFADWGVLVFRDQELDREAHKAFGRHFGELHVHPM 213
            Y +F V++LTPH+GAEVEG+DLA PL  +Q  D+  A+ DW VLVFRDQ++DR+ HKAFGR FG LHVHPM
Sbjct:   18 YRTFEVNSLTPHIGAEVEGVDLAQPLSNEQAQDIHDAWMDWKVLVFRDQQIDRDQHKAFGRRFGRLHVHPM 88          
BLAST of mRNA_M-pyrifera_M_contig76884.18110.1 vs. uniprot
Match: A0A7C8CKP4_9DELT (Taurine dioxygenase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C8CKP4_9DELT)

HSP 1 Score: 103 bits (258), Expect = 2.540e-25
Identity = 48/72 (66.67%), Postives = 56/72 (77.78%), Query Frame = 1
Query:    1 YASFRVSTLTPHLGAEVEGLDLAVPLDEQQRADVVQAFADWGVLVFRDQELDREAHKAFGRHFGELHVHPMN 216
            Y+SFR+ +LTPH+GAEV  LDLA PLD QQ  D+  AF DW VLVFRDQ + R+ HKAFGRHFG LH HPM+
Sbjct:   18 YSSFRLRSLTPHMGAEVLDLDLANPLDAQQSRDLDDAFRDWKVLVFRDQAISRDQHKAFGRHFGMLHSHPMH 89          
BLAST of mRNA_M-pyrifera_M_contig76884.18110.1 vs. uniprot
Match: A0A6L8ATH7_9GAMM (Taurine dioxygenase n=3 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8ATH7_9GAMM)

HSP 1 Score: 103 bits (257), Expect = 3.390e-25
Identity = 47/71 (66.20%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 YASFRVSTLTPHLGAEVEGLDLAVPLDEQQRADVVQAFADWGVLVFRDQELDREAHKAFGRHFGELHVHPM 213
            Y +FRV+TLTPH+GAEV GLDLA PL  +Q  DV  A+ DW VLVFRDQ L+R+ HKAF R FG LH HPM
Sbjct:   18 YRTFRVNTLTPHIGAEVRGLDLAQPLSNEQAQDVNDAWLDWKVLVFRDQHLERDQHKAFARRFGSLHTHPM 88          
BLAST of mRNA_M-pyrifera_M_contig76884.18110.1 vs. uniprot
Match: A0A382I6Z8_9ZZZZ (TauD domain-containing protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382I6Z8_9ZZZZ)

HSP 1 Score: 100 bits (249), Expect = 3.440e-24
Identity = 43/69 (62.32%), Postives = 52/69 (75.36%), Query Frame = 1
Query:   13 RVSTLTPHLGAEVEGLDLAVPLDEQQRADVVQAFADWGVLVFRDQELDREAHKAFGRHFGELHVHPMNF 219
            ++  LTPH+G E+ G+DL  PLD Q  + + Q+F DW VLVFRDQ+LDRE HKAFGR FG LH HPMNF
Sbjct:    2 KIKPLTPHIGVEITGVDLGSPLDNQTMSAIHQSFLDWMVLVFRDQQLDREQHKAFGRRFGRLHTHPMNF 70          
BLAST of mRNA_M-pyrifera_M_contig76884.18110.1 vs. uniprot
Match: A0A7V1ILA4_9DELT (Taurine dioxygenase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V1ILA4_9DELT)

HSP 1 Score: 100 bits (250), Expect = 3.780e-24
Identity = 43/72 (59.72%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 YASFRVSTLTPHLGAEVEGLDLAVPLDEQQRADVVQAFADWGVLVFRDQELDREAHKAFGRHFGELHVHPMN 216
            + +F + TLTPH+GAE+ GLDL+ PL+++Q A++ +AF DW VLV RDQ+L RE HKAFGR FG LHVHP++
Sbjct:   18 FETFSLRTLTPHIGAEIRGLDLSKPLEDEQMAELREAFRDWMVLVIRDQDLTREQHKAFGRRFGRLHVHPLH 89          
BLAST of mRNA_M-pyrifera_M_contig76884.18110.1 vs. uniprot
Match: A0A523M5U9_9GAMM (Taurine dioxygenase n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523M5U9_9GAMM)

HSP 1 Score: 100 bits (249), Expect = 3.990e-24
Identity = 43/71 (60.56%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    1 YASFRVSTLTPHLGAEVEGLDLAVPLDEQQRADVVQAFADWGVLVFRDQELDREAHKAFGRHFGELHVHPM 213
            Y +  V+T+TPH+GAE+ G+DL+ PL  +Q ++V QA+ DW VLVFRDQ LDR+ HKAF R FG+LHVHPM
Sbjct:    3 YETIDVTTITPHIGAEIHGVDLSTPLSNEQFSEVYQAWLDWKVLVFRDQHLDRDQHKAFARRFGKLHVHPM 73          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76884.18110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A351ERC1_9ACTN2.870e-3677.63Taurine dioxygenase (Fragment) n=1 Tax=Acidimicrob... [more]
A0A6P2BCS0_9GAMM5.190e-2969.33Taurine dioxygenase n=1 Tax=Gammaproteobacteria ba... [more]
A0A7C1UHK1_9ACTN4.750e-2868.00Taurine dioxygenase n=1 Tax=Acidimicrobiales bacte... [more]
A0A3C2AYP6_9ACTN2.000e-2768.00Taurine dioxygenase n=1 Tax=Acidimicrobiaceae bact... [more]
A0A6L7XW00_9GAMM4.400e-2664.79Taurine dioxygenase n=2 Tax=Gammaproteobacteria ba... [more]
A0A7C8CKP4_9DELT2.540e-2566.67Taurine dioxygenase n=1 Tax=Myxococcales bacterium... [more]
A0A6L8ATH7_9GAMM3.390e-2566.20Taurine dioxygenase n=3 Tax=Gammaproteobacteria ba... [more]
A0A382I6Z8_9ZZZZ3.440e-2462.32TauD domain-containing protein n=1 Tax=marine meta... [more]
A0A7V1ILA4_9DELT3.780e-2459.72Taurine dioxygenase n=1 Tax=Deltaproteobacteria ba... [more]
A0A523M5U9_9GAMM3.990e-2460.56Taurine dioxygenase n=2 Tax=Gammaproteobacteria ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76884contigM-pyrifera_M_contig76884:789..1016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score76.6
Seed ortholog evalue5.4e-12
Seed eggNOG ortholog384676.PSEEN2720
KEGG rclassRC01331
KEGG koko:K03119
KEGG ReactionR05320
KEGG Pathwayko00430,ko00920,map00430,map00920
Hectar predicted targeting categoryother localisation
EggNOG free text desc.taurine catabolism dioxygenase
EggNOG OGs1MV5K@1224,1RQRU@1236,COG2175@1,COG2175@2
EC1.14.11.17
COG Functional cat.Q
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816668.0066273-CDS-M-pyrifera_M_contig76884:788..10161622816668.0066273-CDS-M-pyrifera_M_contig76884:788..1016Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76884 789..1016 +
1692278108.321058-CDS-M-pyrifera_M_contig76884:788..10161692278108.321058-CDS-M-pyrifera_M_contig76884:788..1016Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76884 789..1016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76884.18110.1prot_M-pyrifera_M_contig76884.18110.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76884 789..1016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76884.18110.1

>prot_M-pyrifera_M_contig76884.18110.1 ID=prot_M-pyrifera_M_contig76884.18110.1|Name=mRNA_M-pyrifera_M_contig76884.18110.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
YASFRVSTLTPHLGAEVEGLDLAVPLDEQQRADVVQAFADWGVLVFRDQE
LDREAHKAFGRHFGELHVHPMNFARK
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mRNA from alignment at M-pyrifera_M_contig76884:789..1016+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76884.18110.1 ID=mRNA_M-pyrifera_M_contig76884.18110.1|Name=mRNA_M-pyrifera_M_contig76884.18110.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig76884:789..1016+ (Macrocystis pyrifera P11B4 male)
TACGCCAGCTTCCGCGTCTCGACCCTCACGCCGCATCTCGGGGCCGAGGT CGAGGGCCTCGATCTCGCCGTGCCGCTCGACGAACAGCAGCGAGCCGATG TCGTCCAGGCGTTCGCCGACTGGGGCGTGTTGGTGTTCCGAGATCAGGAA CTCGACCGCGAGGCGCACAAGGCATTCGGCCGCCACTTCGGTGAGTTGCA CGTACATCCGATGAACTTCGCCCGCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76884:789..1016+

>mRNA_M-pyrifera_M_contig76884.18110.1 ID=mRNA_M-pyrifera_M_contig76884.18110.1|Name=mRNA_M-pyrifera_M_contig76884.18110.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig76884:789..1016+ (Macrocystis pyrifera P11B4 male)
TACGCCAGCTTCCGCGTCTCGACCCTCACGCCGCATCTCGGGGCCGAGGT
CGAGGGCCTCGATCTCGCCGTGCCGCTCGACGAACAGCAGCGAGCCGATG
TCGTCCAGGCGTTCGCCGACTGGGGCGTGTTGGTGTTCCGAGATCAGGAA
CTCGACCGCGAGGCGCACAAGGCATTCGGCCGCCACTTCGGTGAGTTGCA
CGTACATCCGATGAACTTCGCCCGCAAGTACGCCAGCTTCCGCGTCTCGA
CCCTCACGCCGCATCTCGGGGCCGAGGTCGAGGGCCTCGATCTCGCCGTG
CCGCTCGACGAACAGCAGCGAGCCGATGTCGTCCAGGCGTTCGCCGACTG
GGGCGTGTTGGTGTTCCGAGATCAGGAACTCGACCGCGAGGCGCACAAGG
CATTCGGCCGCCACTTCGGTGAGTTGCACGTACATCCGATGAACTTCGCC
CGCAAG
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