mRNA_M-pyrifera_M_contig76842.18107.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76842.18107.1
Unique NamemRNA_M-pyrifera_M_contig76842.18107.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76842.18107.1 vs. uniprot
Match: A0A7D5M5P1_9ARCH (Uncharacterized protein n=1 Tax=Nitrosopumilus ureiphilus TaxID=1470067 RepID=A0A7D5M5P1_9ARCH)

HSP 1 Score: 94.4 bits (233), Expect = 7.230e-18
Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:  322 VKVETP---PGTPVLNTIASGIDSVELDWTAPTWAGGAAITDYLVRYSTDGIS-WTTFADGVGTGTSATVTGLTPGVEYRFKIEAVNANGTSAGSAIKKTTP 615
            V V TP   P  PV  TI  G   V L WTAP+  GG+ ITDY++ YS+DG S WTTF DG  T TSATVTGLT GV+Y F++ AVN+ G+ A S     TP
Sbjct: 1570 VSVATPYTVPKIPVDVTITPGNSQVLLSWTAPSSNGGSPITDYIIDYSSDGGSNWTTFEDGTSTDTSATVTGLTNGVQYSFRVSAVNSAGSGAVSVTASDTP 1671
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BLAST of mRNA_M-pyrifera_M_contig76842.18107.1 vs. uniprot
Match: A0A382YYM9_9ZZZZ (Fibronectin type-III domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382YYM9_9ZZZZ)

HSP 1 Score: 87.8 bits (216), Expect = 4.640e-17
Identity = 46/95 (48.42%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:  334 TPPGTP--VLNTIASGIDSVELDWTAPTWAGGAAITDYLVRYSTDGISWTTFADGVGTGTSATVTGLTPGVEYRFKIEAVNANGTSAGSAIKKTT 612
            T PG P  +  ++  G   + L WTAP+  GG AI+DY+V YSTD  +WTTFADG+    SATVTGL     Y F++ AVNA GT   S    TT
Sbjct:  127 TVPGAPTALAGSLPGGAGEIALTWTAPSSNGGLAISDYVVEYSTDETTWTTFADGLSLALSATVTGLANSTAYTFRVSAVNAAGTGIASTTSATT 221
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BLAST of mRNA_M-pyrifera_M_contig76842.18107.1 vs. uniprot
Match: A0A4P5RD85_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A4P5RD85_9ACTN)

HSP 1 Score: 90.9 bits (224), Expect = 8.650e-17
Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:  340 PGTPVLNTIASGIDSVELDWTAPTWAGGAAITDYLVRYSTDGISWTTFADGVGTGTSATVTGLTPGVEYRFKIEAVNANGTSAGSAIKKTTP 615
            P  P   +  +G     L WTA +  GG+AITDYL+ YSTD ++W+TFADG  TGTSATVTGLT G+ Y F++ A+NA  T + S+    TP
Sbjct:  423 PAAPTGISATAGNTETTLSWTAAS-NGGSAITDYLIEYSTDNLTWSTFADGTSTGTSATVTGLTNGILYYFRVSAINAVDTGSSSSAVSATP 513
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BLAST of mRNA_M-pyrifera_M_contig76842.18107.1 vs. uniprot
Match: A0A2D9PRI3_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D9PRI3_9ACTN)

HSP 1 Score: 88.2 bits (217), Expect = 2.110e-16
Identity = 52/93 (55.91%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:  334 TPPGTPVLNTIASGIDSVELDWTAPTWAGGAAITDYLVRYSTD-GISWTTFADGVGTGTSATVTGLTPGVEYRFKIEAVNANG----TSAGSA 597
            T PGT       +G   V L WTAPT  GG+AITDY V  S+D G +WTTFADG  T  SATVTGLT G  Y F++ AVNA G    TSA SA
Sbjct:  250 TTPGTATALAGTAGDAQVALSWTAPTDTGGSAITDYTVESSSDTGTTWTTFADGTSTTASATVTGLTNGTAYTFRVTAVNAQGSGTATSASSA 342
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BLAST of mRNA_M-pyrifera_M_contig76842.18107.1 vs. uniprot
Match: UPI000A009F6E (fibronectin type III domain-containing protein n=1 Tax=Demequina sp. NBRC 110054 TaxID=1570343 RepID=UPI000A009F6E)

HSP 1 Score: 89.7 bits (221), Expect = 2.260e-16
Identity = 44/96 (45.83%), Postives = 56/96 (58.33%), Query Frame = 1 
Query:  334 TPPGTPVLNTIASGIDSVELDWTAPTWAGGAAITDYLVRYSTDGISWTTFADGVGTGTSATVTGLTPGVEYRFKIEAVNANGTSAGSAIKKTTPRT 621
            T P  P      +G  + +L W AP   GG AITDY++ +   G +W TFADG  T T+ATVTGLT G  Y F++ AVN NGT   S++   TP T
Sbjct:  731 TTPDAPASLVATAGNTAAQLSWDAPMDDGGLAITDYVIEFRETGGAWDTFADGASTDTTATVTGLTNGTTYEFRVSAVNTNGTGTASSVASATPAT 826
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BLAST of mRNA_M-pyrifera_M_contig76842.18107.1 vs. uniprot
Match: A0A2E6UN29_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E6UN29_9ACTN)

HSP 1 Score: 88.6 bits (218), Expect = 5.150e-16
Identity = 57/119 (47.90%), Postives = 70/119 (58.82%), Query Frame = 1 
Query:  370 SGIDSVELDWTAPTWAGGAAITDYLVRYSTD-GISWTTFADGVGTGTSATVTGLTPGVEYRFKIEAVNANGTSAGSA-----IKKTTPRTEQTPLTVSAERFSTGSS---TVPTVTGGS 699
            +G   V L WTAPT  GG+A+TDY V YS+D G +WTTFADG  T  SATVTGLT G  Y F++  VNA GT   S      +  TTP     P +V+A    T ++   T P+ TGGS
Sbjct:  435 AGDTQVALTWTAPTDNGGSAVTDYTVEYSSDSGTTWTTFADGTSTTASATVTGLTNGTSYTFRVSPVNAQGTGTASTASAAVVPVTTPGA---PTSVAATADGTSATVTWTAPSSTGGS 550
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BLAST of mRNA_M-pyrifera_M_contig76842.18107.1 vs. uniprot
Match: A0A6I2XCC2_9ACTN (Uncharacterized protein (Fragment) n=2 Tax=root TaxID=1 RepID=A0A6I2XCC2_9ACTN)

HSP 1 Score: 85.9 bits (211), Expect = 5.220e-16
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:  340 PGTPVLNTIASGIDSVELDWTAPTWAGGAAITDYLVRYSTD-GISWTTFADGVGTGTSATVTGLTPGVEYRFKIEAVNANGTSAGSAI 600
            PG P      SG   V L WTAP+  GG +ITDY+V+YS++ GISW+TF DG  T T+ATVTGLT G  Y F++ AVN +G+   S +
Sbjct:   43 PGAPTSVVGVSGDTQVSLSWTAPSSNGGESITDYVVQYSSNSGISWSTFTDGTSTTTTATVTGLTNGSSYTFRVSAVNDHGSGNYSEV 130
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BLAST of mRNA_M-pyrifera_M_contig76842.18107.1 vs. uniprot
Match: A0A6I3DS40_9ACTN (S8 family serine peptidase (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A6I3DS40_9ACTN)

HSP 1 Score: 88.2 bits (217), Expect = 8.100e-16
Identity = 48/101 (47.52%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:  337 PPGTPVLNTIASGI---DSVELDWTAPTWAGGAAITDYLVRYST-----DGISWTTFADGVGTGTSATVTGLTPGVEYRFKIEAVNANGTSAGSAIKKTTP 615
            P   P   +  +GI    S  L W AP++ GG AITDY+V Y+T     + + WTTFADGV   T+ATVTGLT G +Y+F++ AVNA G  A S+I   TP
Sbjct:  451 PNSAPAAPSSLTGIGYNQSARLSWVAPSFNGGEAITDYVVEYATTSAGSNALVWTTFADGVSVSTTATVTGLTNGTQYQFRVSAVNAVGRGAASSIATVTP 551
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BLAST of mRNA_M-pyrifera_M_contig76842.18107.1 vs. uniprot
Match: A0A388P285_9ACTN (Aqualysin-1 n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A388P285_9ACTN)

HSP 1 Score: 88.2 bits (217), Expect = 8.320e-16
Identity = 64/162 (39.51%), Postives = 83/162 (51.23%), Query Frame = 1 
Query:  139 VTYDQRVVGAWSTFYLESSTGKYRAEVNDATAEGFETTTRESFEVAMTVDGVTVDTDIDIEVKVETPPGTP--VLNTIASGIDSVELDWTAPTWAGGAAITDYLVRYSTD-GISWTTFADGVGTGTSATVTGLTPGVEYRFKIEAVNANGTSAGSAIKKTTP 615
            + Y       WSTF   +S+         AT  G   +T   F V+  V         D    +   PG P  VL T  +   SV L W+AP   GG+AITDY+V +S+D GIS++ FADGV T  SATVTGLT G  Y F+++AVN+ GT A S +    P
Sbjct:  406 IEYSSNSGTTWSTFNDGTSSA------TSATVTGLVNSTTYLFRVSA-VSSAGTSAPSDTATAITGVPGAPNSVLPTALN--TSVRLTWSAPLLNGGSAITDYVVEFSSDAGISYSVFADGVSTSLSATVTGLTNGTSYLFRVKAVNSIGTGAASGVISAIP 558
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BLAST of mRNA_M-pyrifera_M_contig76842.18107.1 vs. uniprot
Match: A0A6L6CF13_9ACTN (S8 family serine peptidase (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A6L6CF13_9ACTN)

HSP 1 Score: 87.8 bits (216), Expect = 8.720e-16
Identity = 47/101 (46.53%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:  337 PPGTPVLNTIASGI---DSVELDWTAPTWAGGAAITDYLVRYST-----DGISWTTFADGVGTGTSATVTGLTPGVEYRFKIEAVNANGTSAGSAIKKTTP 615
            P   P   +  +GI    S  L W AP++ GG A+TDY+V Y+T     + + WTTFADGV   T+ATVTGLT G +Y+F++ AVNA G  A S+I   TP
Sbjct:  451 PNSAPAAPSSLTGIGYNQSARLSWVAPSFNGGEAVTDYVVEYATTSAGSNALVWTTFADGVSVSTTATVTGLTNGTQYQFRVSAVNAVGRGAASSIATVTP 551
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76842.18107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D5M5P1_9ARCH7.230e-1853.92Uncharacterized protein n=1 Tax=Nitrosopumilus ure... [more]
A0A382YYM9_9ZZZZ4.640e-1748.42Fibronectin type-III domain-containing protein (Fr... [more]
A0A4P5RD85_9ACTN8.650e-1750.00Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A2D9PRI3_9ACTN2.110e-1655.91Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
UPI000A009F6E2.260e-1645.83fibronectin type III domain-containing protein n=1... [more]
A0A2E6UN29_9ACTN5.150e-1647.90Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6I2XCC2_9ACTN5.220e-1651.14Uncharacterized protein (Fragment) n=2 Tax=root Ta... [more]
A0A6I3DS40_9ACTN8.100e-1647.52S8 family serine peptidase (Fragment) n=1 Tax=Acti... [more]
A0A388P285_9ACTN8.320e-1639.51Aqualysin-1 n=1 Tax=Acidimicrobiaceae bacterium Ta... [more]
A0A6L6CF13_9ACTN8.720e-1646.53S8 family serine peptidase (Fragment) n=1 Tax=Acti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76842contigM-pyrifera_M_contig76842:153..1013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score81.3
Seed ortholog evalue8.3e-13
Seed eggNOG ortholog318161.Sden_0223
Preferred nameoprH
KEGG rclassRC00078,RC00275,RC02555
KEGG koko:K01083,ko:K02014,ko:K16087,ko:K16966,ko:K17049,ko:K17052
KEGG TC1.B.14,1.B.14.2,5.A.3.8,5.A.3.9
KEGG ReactionR03371,R05745,R09500
KEGG Pathwayko00562,ko00642,ko00920,ko01100,ko01120,ko01220,map00562,map00642,map00920,map01100,map01120,map01220
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0042597,GO:0044464
EggNOG free text desc.Dystroglycan-type cadherin domain protein
EggNOG OGs1MU7T@1224,1RNK8@1236,2QA62@267890,COG2010@1,COG2010@2,COG2931@1,COG2931@2,COG3637@1,COG3637@2,COG5184@1,COG5184@2
EC3.1.3.8
COG Functional cat.MQ
Best tax levelShewanellaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Exons1
Model size861
Cds size861
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816667.9004338-CDS-M-pyrifera_M_contig76842:152..10131622816667.9004338-CDS-M-pyrifera_M_contig76842:152..1013Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76842 153..1013 -
1692278108.280563-CDS-M-pyrifera_M_contig76842:152..10131692278108.280563-CDS-M-pyrifera_M_contig76842:152..1013Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76842 153..1013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76842.18107.1prot_M-pyrifera_M_contig76842.18107.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76842 153..1013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76842.18107.1

>prot_M-pyrifera_M_contig76842.18107.1 ID=prot_M-pyrifera_M_contig76842.18107.1|Name=mRNA_M-pyrifera_M_contig76842.18107.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=287bp
TFINLEGDDPFAPLTGTVSGVDPDEDAETYDLTDSGAETGSWEFGGVTYD
QRVVGAWSTFYLESSTGKYRAEVNDATAEGFETTTRESFEVAMTVDGVTV
DTDIDIEVKVETPPGTPVLNTIASGIDSVELDWTAPTWAGGAAITDYLVR
YSTDGISWTTFADGVGTGTSATVTGLTPGVEYRFKIEAVNANGTSAGSAI
KKTTPRTEQTPLTVSAERFSTGSSTVPTVTGGSGTGAVSYTVVSGPCEVV
DGAITSTAAGVCRIVATKAGDSTYVDEVAAAIEIVVG
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mRNA from alignment at M-pyrifera_M_contig76842:153..1013-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76842.18107.1 ID=mRNA_M-pyrifera_M_contig76842.18107.1|Name=mRNA_M-pyrifera_M_contig76842.18107.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=861bp|location=Sequence derived from alignment at M-pyrifera_M_contig76842:153..1013- (Macrocystis pyrifera P11B4 male)
ACGTTCATCAACCTCGAGGGTGACGACCCGTTCGCTCCCCTCACCGGCAC
CGTCTCCGGTGTCGACCCCGACGAGGACGCCGAGACCTACGACCTCACCG
ACTCCGGCGCTGAGACCGGCAGCTGGGAGTTCGGCGGCGTCACCTACGAC
CAGCGTGTCGTGGGAGCCTGGTCGACCTTCTATCTCGAGTCCTCCACCGG
CAAGTACCGCGCCGAGGTCAACGACGCGACGGCCGAGGGATTCGAGACCA
CCACCCGTGAGTCCTTCGAGGTCGCCATGACCGTCGACGGTGTCACCGTC
GACACCGATATCGACATCGAGGTGAAGGTCGAGACCCCGCCCGGCACGCC
GGTGCTGAACACGATCGCCTCCGGGATCGACTCGGTCGAGCTCGACTGGA
CTGCCCCCACCTGGGCCGGCGGTGCGGCGATCACCGACTATCTCGTCCGC
TACTCCACCGACGGCATCAGCTGGACCACCTTCGCCGACGGTGTCGGCAC
CGGCACCTCCGCCACCGTCACCGGCCTCACCCCCGGCGTCGAATACCGCT
TCAAGATCGAGGCGGTAAACGCCAACGGCACGAGCGCCGGCTCCGCAATC
AAGAAGACCACGCCTCGCACCGAGCAGACCCCGCTCACCGTCAGCGCCGA
GCGCTTCTCGACCGGAAGCTCGACCGTCCCCACCGTCACCGGTGGCTCCG
GCACGGGTGCCGTCTCCTACACGGTCGTCAGCGGCCCGTGTGAAGTCGTC
GACGGTGCGATCACCTCGACTGCCGCCGGCGTGTGCCGCATCGTCGCCAC
CAAGGCCGGCGACAGCACCTATGTCGACGAGGTCGCCGCCGCGATCGAGA
TCGTCGTCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76842:153..1013-

>mRNA_M-pyrifera_M_contig76842.18107.1 ID=mRNA_M-pyrifera_M_contig76842.18107.1|Name=mRNA_M-pyrifera_M_contig76842.18107.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1722bp|location=Sequence derived from alignment at M-pyrifera_M_contig76842:153..1013- (Macrocystis pyrifera P11B4 male)
ACGTTCATCAACCTCGAGGGTGACGACCCGTTCGCTCCCCTCACCGGCAC
CGTCTCCGGTGTCGACCCCGACGAGGACGCCGAGACCTACGACCTCACCG
ACTCCGGCGCTGAGACCGGCAGCTGGGAGTTCGGCGGCGTCACCTACGAC
CAGCGTGTCGTGGGAGCCTGGTCGACCTTCTATCTCGAGTCCTCCACCGG
CAAGTACCGCGCCGAGGTCAACGACGCGACGGCCGAGGGATTCGAGACCA
CCACCCGTGAGTCCTTCGAGGTCGCCATGACCGTCGACGGTGTCACCGTC
GACACCGATATCGACATCGAGGTGAAGGTCGAGACCCCGCCCGGCACGCC
GGTGCTGAACACGATCGCCTCCGGGATCGACTCGGTCGAGCTCGACTGGA
CTGCCCCCACCTGGGCCGGCGGTGCGGCGATCACCGACTATCTCGTCCGC
TACTCCACCGACGGCATCAGCTGGACCACCTTCGCCGACGGTGTCGGCAC
CGGCACCTCCGCCACCGTCACCGGCCTCACCCCCGGCGTCGAATACCGCT
TCAAGATCGAGGCGGTAAACGCCAACGGCACGAGCGCCGGCTCCGCAATC
AAGAAGACCACGCCTCGCACCGAGCAGACCCCGCTCACCGTCAGCGCCGA
GCGCTTCTCGACCGGAAGCTCGACCGTCCCCACCGTCACCGGTGGCTCCG
GCACGGGTGCCGTCTCCTACACGGTCGTCAGCGGCCCGTGTGAAGTCGTC
GACGGTGCGATCACCTCGACTGCCGCCGGCGTGTGCCGCATCGTCGCCAC
CAAGGCCGGCGACAGCACCTATGTCGACGAGGTCGCCGCCGCGATCGAGA
TCGTCGTCGGCACGTTCATCAACCTCGAGGGTGACGACCCGTTCGCTCCC
CTCACCGGCACCGTCTCCGGTGTCGACCCCGACGAGGACGCCGAGACCTA
CGACCTCACCGACTCCGGCGCTGAGACCGGCAGCTGGGAGTTCGGCGGCG
TCACCTACGACCAGCGTGTCGTGGGAGCCTGGTCGACCTTCTATCTCGAG
TCCTCCACCGGCAAGTACCGCGCCGAGGTCAACGACGCGACGGCCGAGGG
ATTCGAGACCACCACCCGTGAGTCCTTCGAGGTCGCCATGACCGTCGACG
GTGTCACCGTCGACACCGATATCGACATCGAGGTGAAGGTCGAGACCCCG
CCCGGCACGCCGGTGCTGAACACGATCGCCTCCGGGATCGACTCGGTCGA
GCTCGACTGGACTGCCCCCACCTGGGCCGGCGGTGCGGCGATCACCGACT
ATCTCGTCCGCTACTCCACCGACGGCATCAGCTGGACCACCTTCGCCGAC
GGTGTCGGCACCGGCACCTCCGCCACCGTCACCGGCCTCACCCCCGGCGT
CGAATACCGCTTCAAGATCGAGGCGGTAAACGCCAACGGCACGAGCGCCG
GCTCCGCAATCAAGAAGACCACGCCTCGCACCGAGCAGACCCCGCTCACC
GTCAGCGCCGAGCGCTTCTCGACCGGAAGCTCGACCGTCCCCACCGTCAC
CGGTGGCTCCGGCACGGGTGCCGTCTCCTACACGGTCGTCAGCGGCCCGT
GTGAAGTCGTCGACGGTGCGATCACCTCGACTGCCGCCGGCGTGTGCCGC
ATCGTCGCCACCAAGGCCGGCGACAGCACCTATGTCGACGAGGTCGCCGC
CGCGATCGAGATCGTCGTCGGC
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