mRNA_M-pyrifera_M_contig76836.18105.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76836.18105.1
Unique NamemRNA_M-pyrifera_M_contig76836.18105.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76836.18105.1 vs. uniprot
Match: A0A7R9V4K0_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V4K0_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 1.530e-17
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:   91 YTAALSLNPADAKLYSNRSLARLQLNNPIEALRDARMAAKLNPDWPKAHYRVGCAFAALKRWEKAAMAFGEAFHLDQTNQQVKAKLKHAVANARAQRAAK 390
            Y  +L      A +++NR+ ARL+L  P +AL+DA +A  L+P + KA YR G A+AALKRWE AA+AF EA +LDQ N++V+A  + A+A  R +  AK
Sbjct:   48 YGESLRHATRSAPVWANRAAARLRLGLPEDALQDAVVARTLDPAYVKAWYREGSAYAALKRWEDAAVAFFEASNLDQGNEEVRAAFQSAIAEGRKEHQAK 147          
BLAST of mRNA_M-pyrifera_M_contig76836.18105.1 vs. uniprot
Match: UPI001455483D (tetratricopeptide repeat protein 28-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455483D)

HSP 1 Score: 84.3 bits (207), Expect = 3.110e-17
Identity = 48/114 (42.11%), Postives = 67/114 (58.77%), Query Frame = 1
Query:   16 EKAVVLREEGNALVKASKWREAEETYTAALSLNPADAKLYSNRSLARLQLNNPIEALRDARMAAKLNPDWPKAHYRVGCAFAALKRWEKAAMAFGEAFHLDQTNQQVKAKLKHA 357
            EKA   RE GNA +K     EA   YT A+  NP D +LYSNRSL+ LQ++    AL DA+ A KLNP+WPK H+R G    +   +++A  ++  A  LD  + ++K  L+ A
Sbjct:    4 EKAEESRERGNACMKKGSPTEAFFYYTEAIKWNPTDPRLYSNRSLSFLQIDQHYHALEDAKKAIKLNPNWPKGHFRKGEVEMSTGHYQEAVCSYQVAVSLDDKDPKLKEALEKA 117          
BLAST of mRNA_M-pyrifera_M_contig76836.18105.1 vs. uniprot
Match: UPI000F55367E (stress-induced-phosphoprotein 1-like n=2 Tax=Pocilloporidae TaxID=46729 RepID=UPI000F55367E)

HSP 1 Score: 83.6 bits (205), Expect = 3.850e-16
Identity = 46/117 (39.32%), Postives = 73/117 (62.39%), Query Frame = 1
Query:   19 KAVVLREEGNALVKASKWREAEETYTAALSLNPADAKLYSNRSLARLQLNNPIEALRDARMAAKLNPDWPKAHYRVGCAFAALKRWEKAAMAFGEAFHLDQTNQQVKAKLKHAVANA 369
            KA  L+++GN  ++A+ + +A E YT A+SL+P++  LYSNRS    +     +AL DA+   +L PDW K + R+G A + LKR+++A  A+ +   LD  N Q+K+ L+ A A A
Sbjct:    6 KAAELKDKGNKFLQANDFAKAIECYTEAISLDPSNHVLYSNRSAGYAKDKKYEQALSDAKKCVELKPDWGKGYSRLGAALSFLKRYDEAEKAYTKGLQLDPENAQLKSGLEEARAMA 122          
BLAST of mRNA_M-pyrifera_M_contig76836.18105.1 vs. uniprot
Match: A0A250WY79_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WY79_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 6.660e-16
Identity = 45/105 (42.86%), Postives = 68/105 (64.76%), Query Frame = 1
Query:   79 AEETYTAALSLNPADAKLYSNRSLARLQLNNPIEALRDARMAAKLNPDWPKAHYRVGCAFAALKRWEKAAMAFGEAFHLDQTNQQVKAKLKHAVANARAQRAAKK 393
            A E Y+ +L     ++ +++NRS+A L+  + + AL DAR++  L+P + KA YR GCA+AALKRWE AA+AF E  +LD  NQ +    K+A+A  R + +A K
Sbjct:  369 AVEQYSKSLRHATRNSVVWANRSMAYLRAGDALMALSDARISRALDPTYVKAWYREGCAYAALKRWEDAALAFFEGSNLDPKNQDIAKAFKNAIAEGRREASAAK 473          
BLAST of mRNA_M-pyrifera_M_contig76836.18105.1 vs. uniprot
Match: A0A1S3JSM2_LINUN (heat shock protein STI1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JSM2_LINUN)

HSP 1 Score: 80.5 bits (197), Expect = 7.390e-16
Identity = 43/107 (40.19%), Postives = 65/107 (60.75%), Query Frame = 1
Query:   19 KAVVLREEGNALVKASKWREAEETYTAALSLNPADAKLYSNRSLARLQLNNPIEALRDARMAAKLNPDWPKAHYRVGCAFAALKRWEKAAMAFGEAFHLDQTNQQVK 339
            K+  L+E+GN  VKA K+ EA   Y+ A+ + P D KLYSNRS+A L++     AL+DA    +L PDWPK ++R G      + +E A M++  A+ LD  ++ +K
Sbjct:    4 KSESLKEQGNECVKAGKYEEAILHYSHAIKIQPNDYKLYSNRSMAFLKIQQYYHALQDAYETIRLKPDWPKGYFRKGEVEFHTEHYETAYMSYKRAYSLDSEDKTLK 110          
BLAST of mRNA_M-pyrifera_M_contig76836.18105.1 vs. uniprot
Match: UPI000D1C2AA7 (ankyrin-2-like n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C2AA7)

HSP 1 Score: 82.4 bits (202), Expect = 8.540e-16
Identity = 44/115 (38.26%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   16 EKAVVLREEGNALVKASKWREAEETYTAALSLNPADAKLYSNRSLARLQLNNPIEALRDARMAAKLNPDWPKAHYRVGCAFAALKRWEKAAMAFGEAFHLDQTNQQVKAKLKHAV 360
            +KA   +  G        +  A + YT AL +NP DA LYSNRS+  ++     +AL+DA+ A  L PDW KA YR G A   L+R+E+AA AF +  +L+  N++++   + AV
Sbjct:  318 DKASEAKSRGTEAFNRKDYLIAIDAYTQALDINPTDASLYSNRSVCWIRTGQAEQALKDAKAAVDLRPDWAKARYREGVALRLLERYEEAATAFYDGINLEPNNKELQEAFRLAV 432          
BLAST of mRNA_M-pyrifera_M_contig76836.18105.1 vs. uniprot
Match: UPI0019D54B44 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D54B44)

HSP 1 Score: 82.4 bits (202), Expect = 9.460e-16
Identity = 43/106 (40.57%), Postives = 62/106 (58.49%), Query Frame = 1
Query:   10 EEEKAVVLREEGNALVKASKWREAEETYTAALSLNPADAKLYSNRSLARLQLNNPIEALRDARMAAKLNPDWPKAHYRVGCAFAALKRWEKAAMAFGEAFHLDQTN 327
            +E+K   L+  G   V    +  A + YT A+ L+PADA LYSNRSL  L++   ++AL DA     L P+WPK +YR G A  +LK +++A  AF +   LD +N
Sbjct:  373 DEDKKAQLKMHGGKAVARMDYAGALKFYTEAIMLDPADATLYSNRSLCHLKIGEKVDALVDANTCISLRPEWPKGYYRKGAAHMSLKEYKEARDAFMDGLKLDPSN 478          
BLAST of mRNA_M-pyrifera_M_contig76836.18105.1 vs. uniprot
Match: A0A6J1WYD1_GALME (small glutamine-rich tetratricopeptide repeat-containing protein alpha-like n=1 Tax=Galleria mellonella TaxID=7137 RepID=A0A6J1WYD1_GALME)

HSP 1 Score: 80.1 bits (196), Expect = 2.060e-15
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   31 LREEGNALVKASKWREAEETYTAALSLNPADAKLYSNRSLARLQLNNPIEALRDARMAAKLNPDWPKAHYRVGCAFAALKRWEKAAMAFGEAFHLDQTNQQVKAKLKHA 357
            L+ EGN L+KA K REA E Y+ A+ L+P ++  + NR+ A  +L     A+ D   A  L PD+ KAH R+G A  AL R  +A  AF  A  L+  N+  K  L+HA
Sbjct:   78 LKNEGNELMKAEKHREALEKYSRAIELDPRNSVFFCNRAAAHFKLGEHEAAVADCTAALALQPDYGKAHGRLGLALTALDRHREARAAFARASQLEPDNESYKQNLRHA 186          
BLAST of mRNA_M-pyrifera_M_contig76836.18105.1 vs. uniprot
Match: UPI001F5C328B (ankyrin repeat and protein kinase domain-containing protein 1-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C328B)

HSP 1 Score: 80.9 bits (198), Expect = 3.240e-15
Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   43 GNALVKASKWREAEETYTAALSLNPADAKLYSNRSLARLQLNNPIEALRDARMAAKLNPDWPKAHYRVGCAFAALKRWEKAAMAFGEAFHLDQTNQQV 336
            G   V+   +  A + Y+ A+ ++PADA LYSNRSL  L+     +AL DA  + ++ PDWPK HYR G AF  LK +++A  AF  A  LD  N+++
Sbjct:  370 GAKAVEEKDYAAATKFYSEAIKVDPADAALYSNRSLCHLKSGKAQDALVDANASIRVRPDWPKGHYRKGAAFMVLKEYKEACDAFMAAVKLDPENEEM 467          
BLAST of mRNA_M-pyrifera_M_contig76836.18105.1 vs. uniprot
Match: A0A0N7KHT9_ORYSJ (Os03g0679800 protein (Fragment) n=9 Tax=Oryza TaxID=4527 RepID=A0A0N7KHT9_ORYSJ)

HSP 1 Score: 79.0 bits (193), Expect = 1.290e-14
Identity = 41/82 (50.00%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   91 YTAALSLNPADAKLYSNRSLARLQLNNPIEALRDARMAAKLNPDWPKAHYRVGCAFAALKRWEKAAMAFGEAFHLDQTNQQV 336
            YT A+ L+PADA LYSNRSL  L+     EAL DA    KL P+W K HYR GCA  ALK +E+A  AF     L+  N ++
Sbjct:  298 YTEAMKLDPADATLYSNRSLCHLRSGAAQEALLDANDCIKLKPEWTKGHYRKGCAHMALKEYEEACTAFMAGTKLNPLNDEM 379          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76836.18105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9V4K0_9CHLO1.530e-1747.00Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
UPI001455483D3.110e-1742.11tetratricopeptide repeat protein 28-like n=1 Tax=A... [more]
UPI000F55367E3.850e-1639.32stress-induced-phosphoprotein 1-like n=2 Tax=Pocil... [more]
A0A250WY79_9CHLO6.660e-1642.86Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A1S3JSM2_LINUN7.390e-1640.19heat shock protein STI1 n=1 Tax=Lingula unguis Tax... [more]
UPI000D1C2AA78.540e-1638.26ankyrin-2-like n=2 Tax=Selaginella moellendorffii ... [more]
UPI0019D54B449.460e-1640.57serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A6J1WYD1_GALME2.060e-1541.28small glutamine-rich tetratricopeptide repeat-cont... [more]
UPI001F5C328B3.240e-1541.84ankyrin repeat and protein kinase domain-containin... [more]
A0A0N7KHT9_ORYSJ1.290e-1450.00Os03g0679800 protein (Fragment) n=9 Tax=Oryza TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76836contigM-pyrifera_M_contig76836:524..919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score88.2
Seed ortholog evalue3.1e-15
Seed eggNOG ortholog4555.Si022662m
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046982,GO:0046983
EggNOG free text desc.TPR repeat
EggNOG OGs37HMC@33090,3GDWU@35493,3IBP0@38820,3KS75@4447,COG0457@1,KOG0548@2759,KOG2449@1,KOG2449@2759
COG Functional cat.EGO
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816667.8331783-CDS-M-pyrifera_M_contig76836:523..9191622816667.8331783-CDS-M-pyrifera_M_contig76836:523..919Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76836 524..919 -
1692278108.24514-CDS-M-pyrifera_M_contig76836:523..9191692278108.24514-CDS-M-pyrifera_M_contig76836:523..919Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76836 524..919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76836.18105.1prot_M-pyrifera_M_contig76836.18105.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76836 524..919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76836.18105.1

>prot_M-pyrifera_M_contig76836.18105.1 ID=prot_M-pyrifera_M_contig76836.18105.1|Name=mRNA_M-pyrifera_M_contig76836.18105.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
GKEEEEKAVVLREEGNALVKASKWREAEETYTAALSLNPADAKLYSNRSL
ARLQLNNPIEALRDARMAAKLNPDWPKAHYRVGCAFAALKRWEKAAMAFG
EAFHLDQTNQQVKAKLKHAVANARAQRAAKK*
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mRNA from alignment at M-pyrifera_M_contig76836:524..919-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76836.18105.1 ID=mRNA_M-pyrifera_M_contig76836.18105.1|Name=mRNA_M-pyrifera_M_contig76836.18105.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig76836:524..919- (Macrocystis pyrifera P11B4 male)
GGGAAGGAGGAGGAGGAGAAGGCAGTGGTGTTGCGAGAAGAAGGCAATGC GCTTGTCAAGGCCAGCAAGTGGCGAGAGGCGGAAGAGACGTATACGGCAG CGCTCTCCCTCAACCCTGCCGACGCAAAGCTCTATTCCAACCGCTCTCTG GCACGCCTACAACTCAACAACCCCATCGAAGCCCTGCGTGATGCCAGAAT GGCTGCAAAGCTCAATCCAGATTGGCCCAAAGCACACTACAGAGTCGGAT GTGCCTTCGCAGCTCTCAAACGCTGGGAAAAGGCTGCCATGGCCTTCGGA GAGGCCTTCCATCTGGACCAGACCAACCAGCAAGTCAAGGCCAAGCTCAA ACATGCCGTCGCCAACGCAAGGGCGCAGAGGGCGGCGAAGAAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76836:524..919-

>mRNA_M-pyrifera_M_contig76836.18105.1 ID=mRNA_M-pyrifera_M_contig76836.18105.1|Name=mRNA_M-pyrifera_M_contig76836.18105.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig76836:524..919- (Macrocystis pyrifera P11B4 male)
GGGAAGGAGGAGGAGGAGAAGGCAGTGGTGTTGCGAGAAGAAGGCAATGC
GCTTGTCAAGGCCAGCAAGTGGCGAGAGGCGGAAGAGACGTATACGGCAG
CGCTCTCCCTCAACCCTGCCGACGCAAAGCTCTATTCCAACCGCTCTCTG
GCACGCCTACAACTCAACAACCCCATCGAAGCCCTGCGTGATGCCAGAAT
GGCTGCAAAGCTCAATCCAGATTGGCCCAAAGCACACTACAGAGTCGGAT
GTGCCTTCGCAGCTCTCAAACGCTGGGAAAAGGCTGCCATGGCCTTCGGA
GAGGCCTTCCATCTGGACCAGACCAACCAGCAAGTCAAGGCCAAGCTCAA
ACATGCCGTCGCCAACGCAAGGGCGCAGAGGGCGGCGAAGAAATGAGGGA
AGGAGGAGGAGGAGAAGGCAGTGGTGTTGCGAGAAGAAGGCAATGCGCTT
GTCAAGGCCAGCAAGTGGCGAGAGGCGGAAGAGACGTATACGGCAGCGCT
CTCCCTCAACCCTGCCGACGCAAAGCTCTATTCCAACCGCTCTCTGGCAC
GCCTACAACTCAACAACCCCATCGAAGCCCTGCGTGATGCCAGAATGGCT
GCAAAGCTCAATCCAGATTGGCCCAAAGCACACTACAGAGTCGGATGTGC
CTTCGCAGCTCTCAAACGCTGGGAAAAGGCTGCCATGGCCTTCGGAGAGG
CCTTCCATCTGGACCAGACCAACCAGCAAGTCAAGGCCAAGCTCAAACAT
GCCGTCGCCAACGCAAGGGCGCAGAGGGCGGCGAAGAAATGA
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