mRNA_M-pyrifera_M_contig76596.18048.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76596.18048.1
Unique NamemRNA_M-pyrifera_M_contig76596.18048.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76596.18048.1 vs. uniprot
Match: D8LPR5_ECTSI (Pex2_Pex12 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPR5_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.140e-35
Identity = 70/85 (82.35%), Postives = 72/85 (84.71%), Query Frame = 1
Query:    1 RRSQLPXXXXXXXXXXXXXGGCGVPADSGACPACGGVRVNAALCVASGFVFCYRCLSGHVREHGECPVTGLACGEEGIVRLFDDE 255
            RRSQLP  XXXXXX     GGCGVP+DSGACPACGG RVN ALC ASGFVFCY CLS HVREHGECPVTGLAC EEGIVRLFDD+
Sbjct:  401 RRSQLPSPXXXXXXPLAAPGGCGVPSDSGACPACGGARVNPALCAASGFVFCYGCLSAHVREHGECPVTGLACQEEGIVRLFDDD 485          
BLAST of mRNA_M-pyrifera_M_contig76596.18048.1 vs. uniprot
Match: A0A7S0CGI9_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CGI9_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 5.010e-12
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   70 VPADSGACPACGGVRVNAALCVASGFVFCYRCLSGHVREHGECPVTGLACGEEGIVRLFD 249
            +P+D   CP C    VN  +   SG+VFCYRC+  HVR+HG CP++G++C E  I+ L++
Sbjct:   50 LPSDKSLCPLCKQSIVNP-VAATSGYVFCYRCIVMHVRQHGTCPISGMSCSESRIIPLYE 108          
BLAST of mRNA_M-pyrifera_M_contig76596.18048.1 vs. uniprot
Match: A0A7S3PVV8_9STRA (Peroxin-12 (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVV8_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.140e-11
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   70 VPADSGACPACGGVRVNAALCVASGFVFCYRCLSGHVREHGE-CPVTGLACGEEGIVRLFDDEGARGVE 273
            +P +   CP C   RVN     +SG+VFC++CL  H+REH E CPVTGL C E  +VRLF+  G  G +
Sbjct:  357 LPNNKSLCPICFQKRVNPTAS-SSGYVFCFKCLVTHIREHAEECPVTGLRCTENQVVRLFEPNGQVGED 424          
BLAST of mRNA_M-pyrifera_M_contig76596.18048.1 vs. uniprot
Match: U6KY55_EIMTE (Peroxin-12 n=2 Tax=Eimeria TaxID=5800 RepID=U6KY55_EIMTE)

HSP 1 Score: 65.5 bits (158), Expect = 2.260e-10
Identity = 32/63 (50.79%), Postives = 39/63 (61.90%), Query Frame = 1
Query:   70 VPADSGACPACGGVRVNAALCVASGFVFCYRCLSGHVREHGECPVTGLACGEEGIVRLFDDEG 258
            +P D   CP C   R  AA C+ SG+VFCYRC+ G VR+H  CPVTGL   E  I RL++  G
Sbjct:  606 LPQDPRICPICHFPREGAA-CIPSGYVFCYRCIVGFVRQHRRCPVTGLPTEEASIRRLYEARG 667          
BLAST of mRNA_M-pyrifera_M_contig76596.18048.1 vs. uniprot
Match: M2XWD0_GALSU (Peroxisome assembly protein 12 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XWD0_GALSU)

HSP 1 Score: 60.8 bits (146), Expect = 8.400e-9
Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 1
Query:   61 GCGVPADSGACPACGGVRVNAALCVASGFVFCYRCLSGHVREHGECPVTGLACGEEGIVRLFDDE 255
            G  +PAD   CP C   R N A+CV+SG+VFCY+CL   V    +CPVT +      I RLF ++
Sbjct:  278 GISLPADRTLCPLCHQPRRNPAVCVSSGYVFCYQCLFTFVERESQCPVTKMPSTIHDIQRLFHEQ 342          
BLAST of mRNA_M-pyrifera_M_contig76596.18048.1 vs. uniprot
Match: UPI001EB0163B (peroxisome assembly protein 12-like n=3 Tax=Haliotis TaxID=6452 RepID=UPI001EB0163B)

HSP 1 Score: 59.3 bits (142), Expect = 2.960e-8
Identity = 22/52 (42.31%), Postives = 33/52 (63.46%), Query Frame = 1
Query:   91 CPACGGVRVNAALCVASGFVFCYRCLSGHVREHGECPVTGLACGEEGIVRLF 246
            CP CG  R N      SG+VFCY C+ G+V++HG+CPVT      + ++++F
Sbjct:  288 CPICGRTRTNDTALSVSGYVFCYPCILGYVKQHGQCPVTQFPATPDHLIKIF 339          
BLAST of mRNA_M-pyrifera_M_contig76596.18048.1 vs. uniprot
Match: UPI0018D089EC (peroxisome assembly protein 12 n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D089EC)

HSP 1 Score: 56.2 bits (134), Expect = 3.560e-7
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   91 CPAC-GGVRVNAALCVASGFVFCYRCLSGHVREHGECPVTGLACGEEGIVRLF 246
            CP C    R+   L V SG++FCY C+S HVR+ GECPVT L   E+ +VRL+
Sbjct:  271 CPVCLQAWRIPTVLPV-SGYIFCYMCISRHVRQAGECPVTHLPAAEDSLVRLY 322          
BLAST of mRNA_M-pyrifera_M_contig76596.18048.1 vs. uniprot
Match: A0A0M3QT81_DROBS (Peroxisome assembly protein 12 n=1 Tax=Drosophila busckii TaxID=30019 RepID=A0A0M3QT81_DROBS)

HSP 1 Score: 55.1 bits (131), Expect = 8.650e-7
Identity = 21/55 (38.18%), Postives = 34/55 (61.82%), Query Frame = 1
Query:   85 GACPACGGVRVNAALCVASGFVFCYRCLSGHVREHGECPVTGLACGEEGIVRLFD 249
            G CP C  V      C  SG+V+C++C+  H+++HG CP+T  A   E +VR+++
Sbjct:  242 GECPICLLVLQTPTACAVSGYVYCWKCIVTHLKQHGSCPITKYAITLEDLVRIYE 296          
BLAST of mRNA_M-pyrifera_M_contig76596.18048.1 vs. uniprot
Match: A0A433U6C4_ELYCH (Peroxisome assembly protein 12 n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433U6C4_ELYCH)

HSP 1 Score: 55.1 bits (131), Expect = 9.470e-7
Identity = 22/55 (40.00%), Postives = 34/55 (61.82%), Query Frame = 1
Query:   91 CPACGGVRVNAALCVASGFVFCYRCLSGHVREHGECPVTGLACGEEGIVRLFDDE 255
            CP C   RVN+     SG+VFCY C++ HVR+   CP+TG     E +V++++ +
Sbjct:  295 CPLCMRQRVNSTALSVSGYVFCYLCITEHVRKEKCCPITGYPATSEHLVKIYEQD 349          
BLAST of mRNA_M-pyrifera_M_contig76596.18048.1 vs. uniprot
Match: A0A1W4V273_DROFC (Peroxisome assembly protein 12 n=1 Tax=Drosophila ficusphila TaxID=30025 RepID=A0A1W4V273_DROFC)

HSP 1 Score: 54.7 bits (130), Expect = 1.190e-6
Identity = 22/56 (39.29%), Postives = 34/56 (60.71%), Query Frame = 1
Query:   82 SGACPACGGVRVNAALCVASGFVFCYRCLSGHVREHGECPVTGLACGEEGIVRLFD 249
            +G CP C         C  SG+VFC++C+  H++EHG CPVT  A   + +VR+++
Sbjct:  241 TGDCPVCLLPIQTPTACSVSGYVFCWKCIVSHMKEHGTCPVTQYAISLDDLVRIYE 296          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76596.18048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPR5_ECTSI1.140e-3582.35Pex2_Pex12 domain-containing protein n=2 Tax=Ectoc... [more]
A0A7S0CGI9_9STRA5.010e-1245.00Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S3PVV8_9STRA6.140e-1147.83Peroxin-12 (Fragment) n=1 Tax=Chaetoceros debilis ... [more]
U6KY55_EIMTE2.260e-1050.79Peroxin-12 n=2 Tax=Eimeria TaxID=5800 RepID=U6KY55... [more]
M2XWD0_GALSU8.400e-944.62Peroxisome assembly protein 12 n=1 Tax=Galdieria s... [more]
UPI001EB0163B2.960e-842.31peroxisome assembly protein 12-like n=3 Tax=Haliot... [more]
UPI0018D089EC3.560e-750.94peroxisome assembly protein 12 n=1 Tax=Plutella xy... [more]
A0A0M3QT81_DROBS8.650e-738.18Peroxisome assembly protein 12 n=1 Tax=Drosophila ... [more]
A0A433U6C4_ELYCH9.470e-740.00Peroxisome assembly protein 12 n=1 Tax=Elysia chlo... [more]
A0A1W4V273_DROFC1.190e-639.29Peroxisome assembly protein 12 n=1 Tax=Drosophila ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76596contigM-pyrifera_M_contig76596:193..474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue2.5e-30
Seed eggNOG ortholog2880.D8LPR5
Preferred namePEX12
KEGG koko:K03327,ko:K06653,ko:K13345
KEGG TC2.A.66.1,3.A.20.1
KEGG Pathwayko04111,ko04146,map04111,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0006082,GO:0006464,GO:0006513,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009062,GO:0009653,GO:0009790,GO:0009791,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016054,GO:0016558,GO:0016567,GO:0016740,GO:0017038,GO:0019395,GO:0019538,GO:0019752,GO:0019787,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030258,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032991,GO:0033036,GO:0033365,GO:0034440,GO:0034613,GO:0036211,GO:0042579,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044743,GO:0045184,GO:0046395,GO:0046872,GO:0046907,GO:0046914,GO:0048137,GO:0048232,GO:0048468,GO:0048515,GO:0048598,GO:0048609,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051301,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0055114,GO:0061630,GO:0061659,GO:0065002,GO:0070647,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0098588,GO:0098805,GO:0140096,GO:1901564,GO:1901575,GO:1990351,GO:1990415,GO:1990429
EggNOG free text desc.protein import into peroxisome matrix
EggNOG OGsKOG0826@1,KOG0826@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04121
Exons1
Model size282
Cds size282
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.9235764-CDS-M-pyrifera_M_contig76596:192..4741622816664.9235764-CDS-M-pyrifera_M_contig76596:192..474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76596 193..474 +
1692278106.612553-CDS-M-pyrifera_M_contig76596:192..4741692278106.612553-CDS-M-pyrifera_M_contig76596:192..474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76596 193..474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76596.18048.1prot_M-pyrifera_M_contig76596.18048.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76596 193..474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76596.18048.1

>prot_M-pyrifera_M_contig76596.18048.1 ID=prot_M-pyrifera_M_contig76596.18048.1|Name=mRNA_M-pyrifera_M_contig76596.18048.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
RRSQLPPPPPPPQPPLAAAGGCGVPADSGACPACGGVRVNAALCVASGFV
FCYRCLSGHVREHGECPVTGLACGEEGIVRLFDDEGARGVEGA*
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mRNA from alignment at M-pyrifera_M_contig76596:193..474+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76596.18048.1 ID=mRNA_M-pyrifera_M_contig76596.18048.1|Name=mRNA_M-pyrifera_M_contig76596.18048.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig76596:193..474+ (Macrocystis pyrifera P11B4 male)
AGAAGATCCCAGCTACCGCCGCCGCCGCCCCCGCCGCAGCCTCCGCTAGC CGCGGCGGGTGGGTGCGGAGTTCCAGCCGACTCTGGGGCGTGCCCCGCGT GTGGAGGCGTGCGCGTGAACGCCGCCTTGTGCGTCGCTTCGGGGTTTGTT TTTTGCTACCGGTGCTTGTCCGGGCACGTTCGAGAGCACGGGGAGTGCCC CGTGACGGGTTTGGCGTGTGGGGAGGAGGGGATCGTGCGTCTCTTTGACG ACGAGGGGGCGCGGGGAGTAGAGGGGGCGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76596:193..474+

>mRNA_M-pyrifera_M_contig76596.18048.1 ID=mRNA_M-pyrifera_M_contig76596.18048.1|Name=mRNA_M-pyrifera_M_contig76596.18048.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig76596:193..474+ (Macrocystis pyrifera P11B4 male)
AGAAGATCCCAGCTACCGCCGCCGCCGCCCCCGCCGCAGCCTCCGCTAGC
CGCGGCGGGTGGGTGCGGAGTTCCAGCCGACTCTGGGGCGTGCCCCGCGT
GTGGAGGCGTGCGCGTGAACGCCGCCTTGTGCGTCGCTTCGGGGTTTGTT
TTTTGCTACCGGTGCTTGTCCGGGCACGTTCGAGAGCACGGGGAGTGCCC
CGTGACGGGTTTGGCGTGTGGGGAGGAGGGGATCGTGCGTCTCTTTGACG
ACGAGGGGGCGCGGGGAGTAGAGGGGGCGTAAAGAAGATCCCAGCTACCG
CCGCCGCCGCCCCCGCCGCAGCCTCCGCTAGCCGCGGCGGGTGGGTGCGG
AGTTCCAGCCGACTCTGGGGCGTGCCCCGCGTGTGGAGGCGTGCGCGTGA
ACGCCGCCTTGTGCGTCGCTTCGGGGTTTGTTTTTTGCTACCGGTGCTTG
TCCGGGCACGTTCGAGAGCACGGGGAGTGCCCCGTGACGGGTTTGGCGTG
TGGGGAGGAGGGGATCGTGCGTCTCTTTGACGACGAGGGGGCGCGGGGAG
TAGAGGGGGCGTAA
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