mRNA_M-pyrifera_M_contig76425.18017.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76425.18017.1
Unique NamemRNA_M-pyrifera_M_contig76425.18017.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76425.18017.1 vs. uniprot
Match: D8LGQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGQ3_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 4.230e-31
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 1
Query:    1 QNDDGWTPLHACCHSKSTAGIGLKILEEVVALGGDLNLKTTRGPGSFNSGFTPLHMASAYG 183
            QN+DGWTPLHACCHS +TA IGL+ILEEVVA+GGDLNL+T RGPG+FNSGFTPLHMA AYG
Sbjct:  110 QNEDGWTPLHACCHSATTAAIGLRILEEVVAMGGDLNLRTKRGPGNFNSGFTPLHMACAYG 170          
BLAST of mRNA_M-pyrifera_M_contig76425.18017.1 vs. uniprot
Match: A0A7S3UV44_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UV44_HETAK)

HSP 1 Score: 85.9 bits (211), Expect = 1.830e-18
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 1
Query:    1 QNDDGWTPLHACCHSKSTAGIGLKILEEVVALGG-DLNLKTTRGPGSFNSGFTPLHMASAYG 183
            QN+ GW PLHACCHS++TA  G+ ++E + A GG D N +T RGPG FN+G+TPLH+A+AYG
Sbjct:  119 QNEAGWLPLHACCHSQATAAAGVALIEAMAASGGADWNARTARGPGPFNAGWTPLHIAAAYG 180          
BLAST of mRNA_M-pyrifera_M_contig76425.18017.1 vs. uniprot
Match: A0A8K1C971_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C971_PYTOL)

HSP 1 Score: 83.6 bits (205), Expect = 2.640e-17
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    4 NDDGWTPLHACCHSKSTAGIGLKILEEVVALGGDLNLKTTRGPGSFNSGFTPLHMASAYG 183
            N+DGWTPLHACCH+++    G+ IL+E+V    DL+L T RGPGSF  GFTPLH+A AYG
Sbjct:  117 NNDGWTPLHACCHTQNAQEAGITILKELVDRKADLSLVTRRGPGSFACGFTPLHIAVAYG 176          
BLAST of mRNA_M-pyrifera_M_contig76425.18017.1 vs. uniprot
Match: A0A7S2WT85_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WT85_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.660e-17
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    4 NDDGWTPLHACCHSKSTAGIGLKILEEVVALGGDLNLKTTRGPGSFNSGFTPLHMASAYG 183
            N+DGWTPLH+CCHS +T   GL ILEE+      L +KT RGP + NSG+T LHMASAYG
Sbjct:  107 NEDGWTPLHSCCHSHTTVSAGLAILEEMSYRNASLEVKTKRGPSAHNSGWTALHMASAYG 166          
BLAST of mRNA_M-pyrifera_M_contig76425.18017.1 vs. uniprot
Match: A0A7S2XYQ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYQ7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 6.320e-17
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    4 NDDGWTPLHACCHSKSTAGIGLKILEEVV--ALGGDL-NLKTTRGPGSFNSGFTPLHMASAYG 183
            N++GW PLHACCH++  AG G +IL+E+V    G DL N KT RGPG +N G+TPLHMA AYG
Sbjct:   77 NENGWLPLHACCHNQGLAGAGCEILDEMVRKGAGADLINAKTKRGPGPYNKGWTPLHMACAYG 139          
BLAST of mRNA_M-pyrifera_M_contig76425.18017.1 vs. uniprot
Match: K3X801_GLOUD (U-box domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X801_GLOUD)

HSP 1 Score: 82.0 bits (201), Expect = 9.300e-17
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    4 NDDGWTPLHACCHSKSTAGIGLKILEEVVALGGDLNLKTTRGPGSFNSGFTPLHMASAYG 183
            N D WTPLH+CCH+ +    G+ IL+E+VA   DLNL T RGPGSF+ G+TPLH+A AYG
Sbjct:  129 NFDNWTPLHSCCHTLNAQEAGISILQELVAQKADLNLVTKRGPGSFSCGWTPLHIACAYG 188          
BLAST of mRNA_M-pyrifera_M_contig76425.18017.1 vs. uniprot
Match: A0A7S3ZT12_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZT12_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.270e-16
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    4 NDDGWTPLHACCHSKSTAGIGLKILEEVVALGGDLNLKTTRGPGSFNSGFTPLHMASAYG 183
            N+DGWTPLHACCH+  T G  L IL+E+V     L  KT RGPG++ SG+T LHMA+AYG
Sbjct:   93 NEDGWTPLHACCHNHQTMGAALDILKELVKRKASLERKTVRGPGAYASGWTVLHMAAAYG 152          
BLAST of mRNA_M-pyrifera_M_contig76425.18017.1 vs. uniprot
Match: A0A2D4BES5_PYTIN (U-box domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BES5_PYTIN)

HSP 1 Score: 81.6 bits (200), Expect = 1.270e-16
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    4 NDDGWTPLHACCHSKSTAGIGLKILEEVVALGGDLNLKTTRGPGSFNSGFTPLHMASAYG 183
            N+DGWTPLHACCH+ +    G+ IL+E+V    +LNL T RGPGSF+ G+TPLH+A AYG
Sbjct:  143 NNDGWTPLHACCHTLNAQDAGIAILKELVDRKENLNLTTRRGPGSFSCGWTPLHIAVAYG 202          
BLAST of mRNA_M-pyrifera_M_contig76425.18017.1 vs. uniprot
Match: A0A485LJM7_9STRA (Aste57867_22255 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJM7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.720e-16
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    4 NDDGWTPLHACCHSKSTAGIGLKILEEVVALGG--DLNLKTTRGPGSFNSGFTPLHMASAYG 183
            N DGWTPLHA CH+ +    G  IL+ ++A  G  DLNLKT+RGPGSF+SG+TPLH+A AYG
Sbjct:  122 NKDGWTPLHASCHTLNAVDAGKAILKAMLAQDGSVDLNLKTSRGPGSFSSGYTPLHIACAYG 183          
BLAST of mRNA_M-pyrifera_M_contig76425.18017.1 vs. uniprot
Match: A0A418AF41_9STRA (U-box domain-containing protein (Fragment) n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AF41_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.820e-16
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    4 NDDGWTPLHACCHSKSTAGIGLKILEEVVAL--GGDLNLKTTRGPGSFNSGFTPLHMASAYG 183
            N+DGWTPLHA CH+ +    G  IL+ V+A     DLN+KT+RGPGSF+SG+TPLH+A AYG
Sbjct:   63 NNDGWTPLHASCHTLNAVDAGKAILKAVLAQDPSADLNIKTSRGPGSFSSGYTPLHIACAYG 124          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76425.18017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LGQ3_ECTSI4.230e-3183.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3UV44_HETAK1.830e-1859.68Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8K1C971_PYTOL2.640e-1761.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2WT85_9STRA2.660e-1761.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2XYQ7_9STRA6.320e-1760.32Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
K3X801_GLOUD9.300e-1760.00U-box domain-containing protein n=1 Tax=Globispora... [more]
A0A7S3ZT12_9STRA1.270e-1660.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2D4BES5_PYTIN1.270e-1660.00U-box domain-containing protein n=2 Tax=Pythium in... [more]
A0A485LJM7_9STRA1.720e-1661.29Aste57867_22255 protein n=1 Tax=Aphanomyces stella... [more]
A0A418AF41_9STRA2.820e-1659.68U-box domain-containing protein (Fragment) n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76425contigM-pyrifera_M_contig76425:374..934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue2.3e-24
Seed eggNOG ortholog2880.D8LGQ3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ankyrin repeats
EggNOG OGs2D5WU@1,2SZZ8@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816663.6853104-CDS-M-pyrifera_M_contig76425:373..4781622816663.6853104-CDS-M-pyrifera_M_contig76425:373..478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76425 374..478 -
1692278106.0459344-CDS-M-pyrifera_M_contig76425:373..4781692278106.0459344-CDS-M-pyrifera_M_contig76425:373..478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76425 374..478 -
1622816663.6986105-CDS-M-pyrifera_M_contig76425:853..9341622816663.6986105-CDS-M-pyrifera_M_contig76425:853..934Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76425 854..934 -
1692278106.0633392-CDS-M-pyrifera_M_contig76425:853..9341692278106.0633392-CDS-M-pyrifera_M_contig76425:853..934Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76425 854..934 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76425.18017.1prot_M-pyrifera_M_contig76425.18017.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76425 374..934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76425.18017.1

>prot_M-pyrifera_M_contig76425.18017.1 ID=prot_M-pyrifera_M_contig76425.18017.1|Name=mRNA_M-pyrifera_M_contig76425.18017.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
QNDDGWTPLHACCHSKSTAGIGLKILEEVVALGGDLNLKTTRGPGSFNSG
FTPLHMASAYG*
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mRNA from alignment at M-pyrifera_M_contig76425:374..934-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76425.18017.1 ID=mRNA_M-pyrifera_M_contig76425.18017.1|Name=mRNA_M-pyrifera_M_contig76425.18017.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=561bp|location=Sequence derived from alignment at M-pyrifera_M_contig76425:374..934- (Macrocystis pyrifera P11B4 male)
CAGAACGACGATGGGTGGACGCCGCTGCACGCATGCTGCCACAGCAAGTC AACTGCCGGGATCGGTCTCAAGATTCTCGAGGTGGGTTGCTGCCGGTCTC AGCATGATGAACTGGACATCGCCTAAGAAGCACCGGCAGACAGTAGACAA GGCAGGAACGCCCCGCGACTCCAAAACAAGAAAGGCTGTTATCGTGTCCA CCACCCTGGTACGCGGAGCACGATGTTAGATGTCGGGCACGCATAAACGG CCACACGAAGGAAACGAGAAGAAAGCCCAGGGAAACAAATAAACCAGGAA ACCTCTTGGCTAGGTCTTCGCACATCTTAATAGCTCCTCTCGATGTCTTC TTCTTGAAGACAAGACTCCTCCTTAAATATACAGCGTGTCGTGCACCAAC ACGTGGATGCGCCGCTATTTATCGCAACCAACCGCGCTTTCTCTCGCGGG GCACAGGAGGTGGTAGCTCTGGGTGGAGATCTGAACCTCAAGACCACCAG AGGGCCGGGCAGCTTCAACTCGGGCTTCACGCCGCTGCACATGGCAAGCG CGTACGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76425:374..934-

>mRNA_M-pyrifera_M_contig76425.18017.1 ID=mRNA_M-pyrifera_M_contig76425.18017.1|Name=mRNA_M-pyrifera_M_contig76425.18017.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig76425:374..934- (Macrocystis pyrifera P11B4 male)
CAGAACGACGATGGGTGGACGCCGCTGCACGCATGCTGCCACAGCAAGTC
AACTGCCGGGATCGGTCTCAAGATTCTCGAGCAGAACGACGATGGGTGGA
CGCCGCTGCACGCATGCTGCCACAGCAAGTCAACTGCCGGGATCGGTCTC
AAGATTCTCGAGGAGGTGGTAGCTCTGGGTGGAGATCTGAACCTCAAGAC
CACCAGAGGGCCGGGCAGCTTCAACTCGGGCTTCACGCCGCTGCACATGG
CAAGCGCGTACGGGTGAGAGGTGGTAGCTCTGGGTGGAGATCTGAACCTC
AAGACCACCAGAGGGCCGGGCAGCTTCAACTCGGGCTTCACGCCGCTGCA
CATGGCAAGCGCGTACGGGTGA
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