mRNA_M-pyrifera_M_contig76278.17982.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76278.17982.1
Unique NamemRNA_M-pyrifera_M_contig76278.17982.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig76278.17982.1 vs. uniprot
Match: A0A1B6Y6A2_9BACT (GTPase Era n=4 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A1B6Y6A2_9BACT)

HSP 1 Score: 402 bits (1034), Expect = 1.710e-139
Identity = 195/259 (75.29%), Postives = 231/259 (89.19%), Query Frame = 1 
Query:    1 ITTHKAQTTRHQIVGIHSEDNAQIIFLDTPGIINPKYELQKAMMRFVEKAEKDADIILFIVEVSENNIPDYAFDELRRFQKKVILVINKVDTEEQKVVEHLSEFLNSRFPFFGTVFVSALDGQGVKGLLNTLVKALPEGPPFYPKDELSEHPLRFFASELIREQLFLQYHEELPYSATVEIIQYEERDDLDYINAEVIVNRMSQKGMIIGKGGKAIKQLGIESRKSIEEFVDRKIFLDLHVKVRDKWRDNPNMVKNFGY 777
            ITTHKAQTTRHQI+GIHSE+N+QIIFLDTPGII+PKYELQKAMMRFVEKAEK+AD+ILFIVE  ENN+P+YAFD L++ +K V+LVINK+D   Q+ +E L++ LN  F F  TV++SAL+G+GV GL+ ++ K L  GPPFYPKDELSEHP+RFFA+ELIREQ+FLQYHEELPYSATV++I YEER+DLDYINAEVIVNR SQKGMIIGKGG+AIKQLG  +R+SIEEFV RK+FLDLHVKVRDKWR+N NMV+NFGY
Sbjct:   37 ITTHKAQTTRHQIIGIHSEENSQIIFLDTPGIIHPKYELQKAMMRFVEKAEKEADVILFIVEAKENNMPEYAFDSLKQMKKPVVLVINKIDESNQEQIEKLAKDLNDYFEFNATVYISALNGEGVPGLMESISKLLLPGPPFYPKDELSEHPVRFFAAELIREQVFLQYHEELPYSATVDVIIYEEREDLDYINAEVIVNRNSQKGMIIGKGGRAIKQLGTAARESIEEFVGRKVFLDLHVKVRDKWRENENMVRNFGY 295
[Close]
BLAST of mRNA_M-pyrifera_M_contig76278.17982.1 vs. uniprot
Match: UPI000362D403 (GTPase Era n=1 Tax=Balneola vulgaris TaxID=287535 RepID=UPI000362D403)

HSP 1 Score: 400 bits (1029), Expect = 9.870e-139
Identity = 195/259 (75.29%), Postives = 227/259 (87.64%), Query Frame = 1 
Query:    1 ITTHKAQTTRHQIVGIHSEDNAQIIFLDTPGIINPKYELQKAMMRFVEKAEKDADIILFIVEVSENNIPDYAFDELRRFQKKVILVINKVDTEEQKVVEHLSEFLNSRFPFFGTVFVSALDGQGVKGLLNTLVKALPEGPPFYPKDELSEHPLRFFASELIREQLFLQYHEELPYSATVEIIQYEERDDLDYINAEVIVNRMSQKGMIIGKGGKAIKQLGIESRKSIEEFVDRKIFLDLHVKVRDKWRDNPNMVKNFGY 777
            ITTHK QTTRHQI+GIHSE+N+QIIFLDTPGII+PKYELQKAMMRFVEKAE++AD+ILFIV+  E N+P+YAFD L+  +K VILV+NK+DT EQ+ VE L+  LN  + F  TVF+SAL+G G+ GL+  + K LP GPPFYPKDELSEHP+RFF SELIREQ+FLQYHEELPYSATV+IIQYEER+DLDYINAEVIVNR SQKGMIIGKGGKAIK+LG+ SR +IEEFV RK+FLDLHVKVRDKWR+  NMV+NFGY
Sbjct:   37 ITTHKPQTTRHQIIGIHSEENSQIIFLDTPGIIHPKYELQKAMMRFVEKAEREADVILFIVDAHEKNMPEYAFDTLKHLRKPVILVVNKIDTAEQETVEALAAALNEDYEFNSTVFISALEGVGMSGLMEGISKLLPPGPPFYPKDELSEHPVRFFVSELIREQVFLQYHEELPYSATVDIIQYEEREDLDYINAEVIVNRSSQKGMIIGKGGKAIKKLGMASRATIEEFVGRKVFLDLHVKVRDKWREKENMVRNFGY 295
[Close]
BLAST of mRNA_M-pyrifera_M_contig76278.17982.1 vs. uniprot
Match: A0A3M8G2H0_9BACT (GTPase Era n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3M8G2H0_9BACT)

HSP 1 Score: 400 bits (1028), Expect = 1.400e-138
Identity = 197/259 (76.06%), Postives = 226/259 (87.26%), Query Frame = 1 
Query:    1 ITTHKAQTTRHQIVGIHSEDNAQIIFLDTPGIINPKYELQKAMMRFVEKAEKDADIILFIVEVSENNIPDYAFDELRRFQKKVILVINKVDTEEQKVVEHLSEFLNSRFPFFGTVFVSALDGQGVKGLLNTLVKALPEGPPFYPKDELSEHPLRFFASELIREQLFLQYHEELPYSATVEIIQYEERDDLDYINAEVIVNRMSQKGMIIGKGGKAIKQLGIESRKSIEEFVDRKIFLDLHVKVRDKWRDNPNMVKNFGY 777
            I THKAQTTRHQI+GI SED+ QIIFLDTPGIINPKYELQKAMMRFVEKAEKDADI+LFIV+  ++  PD+AF EL+  +K V+L+INK+D  EQ   E L++ L S F F  T+FVSAL G G++GL+ +L K+L  GPPFYPKDELSEHPLRFFASELIREQLFLQYHEELPYSATVE+IQYEER+DLDYINAE+IVNR SQKGMIIGKGGKAIKQLG E+RKSIEEFVDRK+FLDLHVKVR+KWR+N +MV+N GY
Sbjct:   36 IATHKAQTTRHQIIGIFSEDDVQIIFLDTPGIINPKYELQKAMMRFVEKAEKDADIVLFIVDAGDSKFPDHAFSELKNLRKPVLLIINKIDLHEQGKAESLAKELQSHFEFTDTIFVSALTGIGLEGLMESLKKSLHPGPPFYPKDELSEHPLRFFASELIREQLFLQYHEELPYSATVEVIQYEEREDLDYINAEIIVNRKSQKGMIIGKGGKAIKQLGTEARKSIEEFVDRKVFLDLHVKVREKWRENEHMVRNLGY 294
[Close]
BLAST of mRNA_M-pyrifera_M_contig76278.17982.1 vs. uniprot
Match: A0A3D1GEI2_9BACT (GTPase Era n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1GEI2_9BACT)

HSP 1 Score: 389 bits (998), Expect = 5.330e-134
Identity = 189/259 (72.97%), Postives = 222/259 (85.71%), Query Frame = 1 
Query:    1 ITTHKAQTTRHQIVGIHSEDNAQIIFLDTPGIINPKYELQKAMMRFVEKAEKDADIILFIVEVSENNIPDYAFDELRRFQKKVILVINKVDTEEQKVVEHLSEFLNSRFPFFGTVFVSALDGQGVKGLLNTLVKALPEGPPFYPKDELSEHPLRFFASELIREQLFLQYHEELPYSATVEIIQYEERDDLDYINAEVIVNRMSQKGMIIGKGGKAIKQLGIESRKSIEEFVDRKIFLDLHVKVRDKWRDNPNMVKNFGY 777
            ITTHKAQTTRHQIVGIHS++++Q+IFLDTPGIINPKYELQKAMM+FVEKAEKDAD+ILFI E  +   PD  F +LR  +K VILV+NK+D  EQ+     +E LN RF F  TV++SAL+  G++ LL+ + K +  GPPFYPKDELSEHP+RFFASELIREQLFLQYHEE+PYS TVE+IQYEERDDLDYINAE+IVNR SQKGMIIGKGGKAIK+LG+E+RKSIE FVDRK+FLDLHVKVR+KWR+N NMV+N GY
Sbjct:   36 ITTHKAQTTRHQIVGIHSDEHSQLIFLDTPGIINPKYELQKAMMKFVEKAEKDADVILFIAEADDTRFPDDTFQQLRNLKKPVILVLNKIDKTEQESAAKTAEELNERFNFSETVYISALNNSGIEHLLDMVTKLVQPGPPFYPKDELSEHPVRFFASELIREQLFLQYHEEIPYSCTVEVIQYEERDDLDYINAEIIVNRNSQKGMIIGKGGKAIKKLGMEARKSIEVFVDRKVFLDLHVKVREKWRENENMVRNLGY 294
[Close]
BLAST of mRNA_M-pyrifera_M_contig76278.17982.1 vs. uniprot
Match: A0A6A8Q1N6_9BACT (GTPase Era n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6A8Q1N6_9BACT)

HSP 1 Score: 374 bits (959), Expect = 5.820e-128
Identity = 175/259 (67.57%), Postives = 220/259 (84.94%), Query Frame = 1 
Query:    1 ITTHKAQTTRHQIVGIHSEDNAQIIFLDTPGIINPKYELQKAMMRFVEKAEKDADIILFIVEVSENNIPDYAFDELRRFQKKVILVINKVDTEEQKVVEHLSEFLNSRFPFFGTVFVSALDGQGVKGLLNTLVKALPEGPPFYPKDELSEHPLRFFASELIREQLFLQYHEELPYSATVEIIQYEERDDLDYINAEVIVNRMSQKGMIIGKGGKAIKQLGIESRKSIEEFVDRKIFLDLHVKVRDKWRDNPNMVKNFGY 777
            ITTHK QTTRHQ++GIHS ++AQ+IFLDTPGIINPKYELQKAMMRFV KAEKDAD++LFIVE  E+N+P+YAFD L+  QK VILVINK+D + +  V+ L+  +     F  TV +SAL G+G+  L+  + K +PEGPPFYPKDELSEHP+RFF +ELIREQ++LQ+H+E+PYSATV I+QY+ERDDLDYI+A++IVN+ SQKGM+IGKGGKAIK+LG+ESRK+I+EFV RK+FLDLHVKVR+KWR+  NMV+  GY
Sbjct:   44 ITTHKPQTTRHQVLGIHSNEHAQLIFLDTPGIINPKYELQKAMMRFVNKAEKDADVVLFIVEAGEDNLPEYAFDSLKHLQKPVILVINKIDLKPKDEVQQLATKIEDMHRFEDTVLISALGGEGIPSLMEAITKYIPEGPPFYPKDELSEHPVRFFVAELIREQIYLQFHQEIPYSATVSIVQYDERDDLDYISADIIVNQKSQKGMLIGKGGKAIKKLGMESRKTIQEFVGRKVFLDLHVKVREKWREKENMVRYLGY 302
[Close]
BLAST of mRNA_M-pyrifera_M_contig76278.17982.1 vs. uniprot
Match: A0A6M1SK80_9BACT (GTPase Era n=1 Tax=Balneolaceae bacterium YR4-1 TaxID=2709311 RepID=A0A6M1SK80_9BACT)

HSP 1 Score: 352 bits (903), Expect = 1.440e-119
Identity = 169/259 (65.25%), Postives = 213/259 (82.24%), Query Frame = 1 
Query:    1 ITTHKAQTTRHQIVGIHSEDNAQIIFLDTPGIINPKYELQKAMMRFVEKAEKDADIILFIVEVSENNIPDYAFDELRRFQKKVILVINKVDTEEQKVVEHLSEFLNSRFPFFGTVFVSALDGQGVKGLLNTLVKALPEGPPFYPKDELSEHPLRFFASELIREQLFLQYHEELPYSATVEIIQYEERDDLDYINAEVIVNRMSQKGMIIGKGGKAIKQLGIESRKSIEEFVDRKIFLDLHVKVRDKWRDNPNMVKNFGY 777
            ITTHK QTTRHQI+GIHSE++ QIIFLDTPGII+P+YELQKAMMR V++A  DAD+IL IV+V E  IP+  F      QK V+LV+NK+D   +   + ++  L +++ F  T +VSAL G+G+  L+NT+ + LP GPPFYPKD LSE P+RFF +ELIREQLFLQ+H+ELPYS TV I+QY+ERDDLDYI+AEVIVNR SQKGM+IGKGGKAIK+LG  +R+SIE+F+D+K++LDLHVKVRDKWRDNPNMV+N+GY
Sbjct:   37 ITTHKPQTTRHQILGIHSEEDLQIIFLDTPGIIDPRYELQKAMMRLVDRARNDADLILLIVDVEEPQIPNRIFKAFASLQKPVMLVVNKLDKVSKPGAQAVAAELKTKYDFEETAYVSALTGEGISELMNTIKERLPAGPPFYPKDMLSEQPIRFFVAELIREQLFLQFHQELPYSCTVNIVQYDERDDLDYIDAEVIVNRESQKGMLIGKGGKAIKKLGKNARESIEQFIDKKVYLDLHVKVRDKWRDNPNMVRNYGY 295
[Close]
BLAST of mRNA_M-pyrifera_M_contig76278.17982.1 vs. uniprot
Match: A0A1M4UKT5_9BACT (GTPase Era n=1 Tax=Aliifodinibius roseus TaxID=1194090 RepID=A0A1M4UKT5_9BACT)

HSP 1 Score: 337 bits (863), Expect = 1.850e-113
Identity = 161/260 (61.92%), Postives = 216/260 (83.08%), Query Frame = 1 
Query:    1 ITTHKAQTTRHQIVGIHSEDNAQIIFLDTPGIINPKYELQKAMMRFVEKAEKDADIILFIVEVSENNIPDYAFDELRRFQ-KKVILVINKVDTEEQKVVEHLSEFLNSRFPFFGTVFVSALDGQGVKGLLNTLVKALPEGPPFYPKDELSEHPLRFFASELIREQLFLQYHEELPYSATVEIIQYEERDDLDYINAEVIVNRMSQKGMIIGKGGKAIKQLGIESRKSIEEFVDRKIFLDLHVKVRDKWRDNPNMVKNFGY 777
            ITTHK QTTRHQI+GIHSED+ QIIFLDTPG+INP+YELQKAMM+ V++A  DADIIL IV+V++  +P   F+ L   + KK+ LVINK+D    +  E +++ +  +F F  T+ VSAL+G+G++ L++T+   L EGPPFYPKD LSE P+RFF +E+IREQLFL+YH+E+PYS+T+EI+QY+ERDDLDYI+A++IVNR SQKG++IGKGGKAIKQLG  +R+ IEEFV++K++LDLHVKVRDKWR++PN V+++GY
Sbjct:   36 ITTHKPQTTRHQILGIHSEDDLQIIFLDTPGVINPRYELQKAMMKTVDRARADADIILLIVDVTDYEVPGRIFEMLSSLKGKKIFLVINKIDKTSGQQTEVVAKNIREKFDFDDTLLVSALNGEGLQELMDTIKTNLKEGPPFYPKDMLSEQPVRFFVAEMIREQLFLRYHQEIPYSSTIEIVQYDERDDLDYISADIIVNRDSQKGILIGKGGKAIKQLGRNAREVIEEFVEKKVYLDLHVKVRDKWREDPNRVRHYGY 295
[Close]
BLAST of mRNA_M-pyrifera_M_contig76278.17982.1 vs. uniprot
Match: A0A521C5X5_9BACT (GTPase Era n=1 Tax=Aliifodinibius sediminis TaxID=1214077 RepID=A0A521C5X5_9BACT)

HSP 1 Score: 333 bits (854), Expect = 4.040e-112
Identity = 159/260 (61.15%), Postives = 214/260 (82.31%), Query Frame = 1 
Query:    1 ITTHKAQTTRHQIVGIHSEDNAQIIFLDTPGIINPKYELQKAMMRFVEKAEKDADIILFIVEVSENNIPDYAFDELRRFQ-KKVILVINKVDTEEQKVVEHLSEFLNSRFPFFGTVFVSALDGQGVKGLLNTLVKALPEGPPFYPKDELSEHPLRFFASELIREQLFLQYHEELPYSATVEIIQYEERDDLDYINAEVIVNRMSQKGMIIGKGGKAIKQLGIESRKSIEEFVDRKIFLDLHVKVRDKWRDNPNMVKNFGY 777
            ITTHK QTTRHQI+GIHSED+ QIIFLDTPGIINP+YELQKAMM+ V++A  DADIIL IV+V++  +P   F      + KK+ LVINK+D   ++ V+ +++ +  RF F  T+ VSAL+G+G++GL+  + + L  GPPFYPKD LSE P+RFF +E+IREQLFL YH+E+PYS+T++I+QY+ERDDLDYI+A++IVNR SQKG++IGKGGKAIK+LG  +R+ IE+FVD+K++LDLHVKVRDKWR++PN V+++GY
Sbjct:   36 ITTHKPQTTRHQILGIHSEDDLQIIFLDTPGIINPRYELQKAMMKTVDRARTDADIILLIVDVTDYEVPGRIFKMFASMKGKKIFLVINKIDKTSEQQVKVVTQNIQERFDFDQTLLVSALNGEGLQGLMTAIKENLKPGPPFYPKDMLSEQPVRFFVAEMIREQLFLLYHQEIPYSSTIDIVQYDERDDLDYISADIIVNRNSQKGILIGKGGKAIKKLGKNAREVIEDFVDKKVYLDLHVKVRDKWREDPNRVRHYGY 295
[Close]
BLAST of mRNA_M-pyrifera_M_contig76278.17982.1 vs. uniprot
Match: A0A5D3YI33_9BACT (GTPase Era n=1 Tax=Fodinibius salinus TaxID=860790 RepID=A0A5D3YI33_9BACT)

HSP 1 Score: 324 bits (831), Expect = 1.260e-108
Identity = 154/260 (59.23%), Postives = 210/260 (80.77%), Query Frame = 1 
Query:    1 ITTHKAQTTRHQIVGIHSEDNAQIIFLDTPGIINPKYELQKAMMRFVEKAEKDADIILFIVEVSENNIPDYAFDELRRFQ-KKVILVINKVDTEEQKVVEHLSEFLNSRFPFFGTVFVSALDGQGVKGLLNTLVKALPEGPPFYPKDELSEHPLRFFASELIREQLFLQYHEELPYSATVEIIQYEERDDLDYINAEVIVNRMSQKGMIIGKGGKAIKQLGIESRKSIEEFVDRKIFLDLHVKVRDKWRDNPNMVKNFGY 777
            ITTHK QTTRHQI+GIHSED  QIIFLDTPG+I+P YELQKAMM+ V++A  DADIIL IV+V++  IP   F      + K++ LV NK+D   ++  + ++E +  +F F  T+FVSAL+G+G++ L++T+   +  GPPFYPK+ LSE P+RFF +E++REQLFLQYH+E+PYS T+ I+QY+ERDDLDYI+A+++VNR SQKG++IGKGGKAIKQLG  +R+ IE+FVD+KI+LDLHVKVR+KWR+NP+ V+++GY
Sbjct:   36 ITTHKPQTTRHQIIGIHSEDELQIIFLDTPGVIDPSYELQKAMMKTVDRARTDADIILLIVDVTDYEIPGRIFKMFSSMKNKQIFLVPNKIDKVSEQEAKVVAEEIREKFDFDDTLFVSALNGEGLQKLMDTIKANITSGPPFYPKEMLSEQPVRFFVAEMVREQLFLQYHQEIPYSTTINIVQYDERDDLDYISADIVVNRESQKGILIGKGGKAIKQLGKNAREVIEKFVDKKIYLDLHVKVREKWRENPSHVRHYGY 295
[Close]
BLAST of mRNA_M-pyrifera_M_contig76278.17982.1 vs. uniprot
Match: A0A6M1TLU5_9BACT (GTPase Era n=2 Tax=Aliifodinibius TaxID=1397107 RepID=A0A6M1TLU5_9BACT)

HSP 1 Score: 324 bits (830), Expect = 1.780e-108
Identity = 151/260 (58.08%), Postives = 214/260 (82.31%), Query Frame = 1 
Query:    1 ITTHKAQTTRHQIVGIHSEDNAQIIFLDTPGIINPKYELQKAMMRFVEKAEKDADIILFIVEVSENNIPDYAFDELRRFQ-KKVILVINKVDTEEQKVVEHLSEFLNSRFPFFGTVFVSALDGQGVKGLLNTLVKALPEGPPFYPKDELSEHPLRFFASELIREQLFLQYHEELPYSATVEIIQYEERDDLDYINAEVIVNRMSQKGMIIGKGGKAIKQLGIESRKSIEEFVDRKIFLDLHVKVRDKWRDNPNMVKNFGY 777
            ITTHK QTTRHQI+GIHSE++ QIIFLDTPG+I+P YELQKAMM+ V++A +DADIIL IV+V++ N+P   F      + K++ L+INK+D    +  + +++ +  +F F  T+FVSAL+G+G++ L++T+ + +  GPPFYPKD LSE P+RFF +E+IREQLFL YH+E+PYS+T++I+QY+ERDDLDYI+A++IVNR SQKG++IGKGGKAIK+LG  +R+ I+ FVD+K++LDLHVKVR+KWR+NP+ V+++GY
Sbjct:   36 ITTHKPQTTRHQILGIHSEEDLQIIFLDTPGVIDPSYELQKAMMKTVDRARRDADIILLIVDVTDYNVPGRIFKMFSSMKNKEIFLIINKIDKTSDQQCQAVAKEIQGKFDFDDTLFVSALNGEGLQQLMDTIKENITSGPPFYPKDMLSEQPVRFFVAEMIREQLFLLYHQEIPYSSTIDIVQYDERDDLDYISADIIVNRESQKGILIGKGGKAIKKLGKSAREVIQAFVDKKVYLDLHVKVREKWRENPSHVRHYGY 295
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76278.17982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1B6Y6A2_9BACT1.710e-13975.29GTPase Era n=4 Tax=Bacteroidetes/Chlorobi group Ta... [more]
UPI000362D4039.870e-13975.29GTPase Era n=1 Tax=Balneola vulgaris TaxID=287535 ... [more]
A0A3M8G2H0_9BACT1.400e-13876.06GTPase Era n=1 Tax=Balneola sp. TaxID=2024824 RepI... [more]
A0A3D1GEI2_9BACT5.330e-13472.97GTPase Era n=1 Tax=Balneolaceae bacterium TaxID=20... [more]
A0A6A8Q1N6_9BACT5.820e-12867.57GTPase Era n=1 Tax=Balneolaceae bacterium TaxID=20... [more]
A0A6M1SK80_9BACT1.440e-11965.25GTPase Era n=1 Tax=Balneolaceae bacterium YR4-1 Ta... [more]
A0A1M4UKT5_9BACT1.850e-11361.92GTPase Era n=1 Tax=Aliifodinibius roseus TaxID=119... [more]
A0A521C5X5_9BACT4.040e-11261.15GTPase Era n=1 Tax=Aliifodinibius sediminis TaxID=... [more]
A0A5D3YI33_9BACT1.260e-10859.23GTPase Era n=1 Tax=Fodinibius salinus TaxID=860790... [more]
A0A6M1TLU5_9BACT1.780e-10858.08GTPase Era n=2 Tax=Aliifodinibius TaxID=1397107 Re... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76278contigM-pyrifera_M_contig76278:2..781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score409.1
Seed ortholog evalue1.6e-111
Seed eggNOG ortholog1121104.AQXH01000001_gene1860
Preferred nameera
KEGG koko:K03595,ko:K06883
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006275,GO:0008150,GO:0008156,GO:0009889,GO:0009890,GO:0009892,GO:0010556,GO:0010558,GO:0010605,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019219,GO:0019222,GO:0030174,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032297,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051302,GO:0051781,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:0090329,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
EggNOG OGs1INM6@117747,4NES2@976,COG1159@1,COG1159@2
COG Functional cat.S
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03029
Exons1
Model size780
Cds size780
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816661.8956778-CDS-M-pyrifera_M_contig76278:1..7811622816661.8956778-CDS-M-pyrifera_M_contig76278:1..781Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76278 2..781 +
1692278104.9742782-CDS-M-pyrifera_M_contig76278:1..7811692278104.9742782-CDS-M-pyrifera_M_contig76278:1..781Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76278 2..781 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76278.17982.1prot_M-pyrifera_M_contig76278.17982.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76278 2..781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76278.17982.1

>prot_M-pyrifera_M_contig76278.17982.1 ID=prot_M-pyrifera_M_contig76278.17982.1|Name=mRNA_M-pyrifera_M_contig76278.17982.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=260bp
ITTHKAQTTRHQIVGIHSEDNAQIIFLDTPGIINPKYELQKAMMRFVEKA
EKDADIILFIVEVSENNIPDYAFDELRRFQKKVILVINKVDTEEQKVVEH
LSEFLNSRFPFFGTVFVSALDGQGVKGLLNTLVKALPEGPPFYPKDELSE
HPLRFFASELIREQLFLQYHEELPYSATVEIIQYEERDDLDYINAEVIVN
RMSQKGMIIGKGGKAIKQLGIESRKSIEEFVDRKIFLDLHVKVRDKWRDN
PNMVKNFGY*
back to top

mRNA from alignment at M-pyrifera_M_contig76278:2..781+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76278.17982.1 ID=mRNA_M-pyrifera_M_contig76278.17982.1|Name=mRNA_M-pyrifera_M_contig76278.17982.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig76278:2..781+ (Macrocystis pyrifera P11B4 male)
ATCACTACTCATAAAGCCCAAACAACGCGACACCAAATTGTAGGGATTCA
TTCAGAAGACAATGCGCAGATCATTTTTTTAGATACTCCAGGTATCATCA
ATCCAAAATATGAACTGCAAAAAGCAATGATGCGGTTTGTAGAGAAAGCT
GAGAAAGACGCCGATATCATTCTATTCATTGTTGAAGTTTCAGAAAATAA
CATTCCTGATTATGCTTTTGATGAACTCCGCAGATTTCAAAAGAAAGTAA
TACTTGTCATCAATAAAGTAGATACAGAAGAACAAAAAGTAGTTGAACAT
CTAAGTGAATTCCTGAATTCTAGATTTCCCTTTTTTGGTACTGTTTTTGT
CTCGGCACTTGATGGGCAAGGGGTGAAAGGATTGCTCAATACTTTGGTAA
AAGCATTACCCGAAGGGCCGCCTTTTTACCCGAAAGATGAATTAAGTGAA
CATCCACTTCGGTTTTTTGCATCAGAATTGATTAGAGAGCAACTCTTTCT
TCAATACCATGAAGAGCTTCCATACTCGGCTACTGTTGAAATTATCCAAT
ATGAAGAGCGAGATGATTTAGATTACATTAATGCAGAAGTAATTGTAAAC
CGAATGTCTCAAAAAGGAATGATTATTGGTAAAGGCGGAAAAGCTATTAA
GCAATTAGGTATAGAATCGCGAAAGTCTATTGAGGAATTTGTAGATCGAA
AAATATTTCTAGATTTACATGTGAAAGTTCGGGATAAATGGCGGGACAAC
CCAAATATGGTGAAGAATTTTGGGTATTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig76278:2..781+

>mRNA_M-pyrifera_M_contig76278.17982.1 ID=mRNA_M-pyrifera_M_contig76278.17982.1|Name=mRNA_M-pyrifera_M_contig76278.17982.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1560bp|location=Sequence derived from alignment at M-pyrifera_M_contig76278:2..781+ (Macrocystis pyrifera P11B4 male)
ATCACTACTCATAAAGCCCAAACAACGCGACACCAAATTGTAGGGATTCA
TTCAGAAGACAATGCGCAGATCATTTTTTTAGATACTCCAGGTATCATCA
ATCCAAAATATGAACTGCAAAAAGCAATGATGCGGTTTGTAGAGAAAGCT
GAGAAAGACGCCGATATCATTCTATTCATTGTTGAAGTTTCAGAAAATAA
CATTCCTGATTATGCTTTTGATGAACTCCGCAGATTTCAAAAGAAAGTAA
TACTTGTCATCAATAAAGTAGATACAGAAGAACAAAAAGTAGTTGAACAT
CTAAGTGAATTCCTGAATTCTAGATTTCCCTTTTTTGGTACTGTTTTTGT
CTCGGCACTTGATGGGCAAGGGGTGAAAGGATTGCTCAATACTTTGGTAA
AAGCATTACCCGAAGGGCCGCCTTTTTACCCGAAAGATGAATTAAGTGAA
CATCCACTTCGGTTTTTTGCATCAGAATTGATTAGAGAGCAACTCTTTCT
TCAATACCATGAAGAGCTTCCATACTCGGCTACTGTTGAAATTATCCAAT
ATGAAGAGCGAGATGATTTAGATTACATTAATGCAGAAGTAATTGTAAAC
CGAATGTCTCAAAAAGGAATGATTATTGGTAAAGGCGGAAAAGCTATTAA
GCAATTAGGTATAGAATCGCGAAAGTCTATTGAGGAATTTGTAGATCGAA
AAATATTTCTAGATTTACATGTGAAAGTTCGGGATAAATGGCGGGACAAC
CCAAATATGGTGAAGAATTTTGGGTATTGAATCACTACTCATAAAGCCCA
AACAACGCGACACCAAATTGTAGGGATTCATTCAGAAGACAATGCGCAGA
TCATTTTTTTAGATACTCCAGGTATCATCAATCCAAAATATGAACTGCAA
AAAGCAATGATGCGGTTTGTAGAGAAAGCTGAGAAAGACGCCGATATCAT
TCTATTCATTGTTGAAGTTTCAGAAAATAACATTCCTGATTATGCTTTTG
ATGAACTCCGCAGATTTCAAAAGAAAGTAATACTTGTCATCAATAAAGTA
GATACAGAAGAACAAAAAGTAGTTGAACATCTAAGTGAATTCCTGAATTC
TAGATTTCCCTTTTTTGGTACTGTTTTTGTCTCGGCACTTGATGGGCAAG
GGGTGAAAGGATTGCTCAATACTTTGGTAAAAGCATTACCCGAAGGGCCG
CCTTTTTACCCGAAAGATGAATTAAGTGAACATCCACTTCGGTTTTTTGC
ATCAGAATTGATTAGAGAGCAACTCTTTCTTCAATACCATGAAGAGCTTC
CATACTCGGCTACTGTTGAAATTATCCAATATGAAGAGCGAGATGATTTA
GATTACATTAATGCAGAAGTAATTGTAAACCGAATGTCTCAAAAAGGAAT
GATTATTGGTAAAGGCGGAAAAGCTATTAAGCAATTAGGTATAGAATCGC
GAAAGTCTATTGAGGAATTTGTAGATCGAAAAATATTTCTAGATTTACAT
GTGAAAGTTCGGGATAAATGGCGGGACAACCCAAATATGGTGAAGAATTT
TGGGTATTGA
back to top