mRNA_M-pyrifera_M_contig75872.17903.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75872.17903.1
Unique NamemRNA_M-pyrifera_M_contig75872.17903.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75872.17903.1 vs. uniprot
Match: A0A5A8CHI0_CAFRO (Uncharacterized protein n=4 Tax=Sar TaxID=2698737 RepID=A0A5A8CHI0_CAFRO)

HSP 1 Score: 108 bits (270), Expect = 6.410e-25
Identity = 55/121 (45.45%), Postives = 82/121 (67.77%), Query Frame = 1
Query:   58 LSKQYAEVNRQRFRVSTRDKPHDTIVTADLGDVACAHVRSKNILKDIWTAVGGMVGGEASYATHLINEALAAAVDDAVAQAKDRGANALVKTRFEISLAQNRLIAGLHASVLCHGTAVRTE 420
            + K  A    + F V+T  +     VT  +G V+ A+VRS+N++ D+WTA+ G  GGEA Y THL+NE+ +AA+D AV + K+ G + LV  RFE++ + NRL+ G+HASV+C+GTAV+ E
Sbjct:  365 VEKAVAAAPARAFPVTTGGEVTGYRVTQVIGVVSAANVRSRNLMADLWTALAGAFGGEAGYYTHLMNESTSAAMDRAVHRTKELGGDGLVNVRFEMATSMNRLVMGMHASVICYGTAVKLE 485          
BLAST of mRNA_M-pyrifera_M_contig75872.17903.1 vs. uniprot
Match: A0A7S1GE42_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GE42_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 7.060e-23
Identity = 52/110 (47.27%), Postives = 71/110 (64.55%), Query Frame = 1
Query:  100 VSTRDKPHDTIVTADLGDVACAHVRSKNILKDIWTAVGGMVGGEASYATHLINEALAAAVDDAVAQAKDRGANALVKTRFEISLAQNRLIAGLHASVLCHGTAVRTESKK 429
            V+ R   H      ++G V+ A VRSKN+LKD+  AVGG+ GGE +Y +HL+NEA  AA+D  V  A   GA+A+V  RF+ +   NRLI GLHA+VL +GTA+  +  K
Sbjct:   50 VTNRSSIHGREQAEEIGLVSAADVRSKNVLKDVLAAVGGVFGGETTYYSHLLNEASQAAMDKLVQHAASLGADAVVNVRFQTTTTMNRLIIGLHATVLVYGTAITLKPLK 159          
BLAST of mRNA_M-pyrifera_M_contig75872.17903.1 vs. uniprot
Match: K3WKP2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKP2_GLOUD)

HSP 1 Score: 92.0 bits (227), Expect = 6.170e-19
Identity = 51/129 (39.53%), Postives = 77/129 (59.69%), Query Frame = 1
Query:   37 VASGVSPLSKQYAEVNRQRFRVSTRDKPHDTIVTADLGDVACAHVRSKNILKDIWTAVGGMVGGEASYATHLINEALAAAVDDAVAQAKDRGANALVKTRFEISLAQNRLIAGLHASVLCHGTAVRTES 423
            VA+ V  +SK       ++   +TRD  +   V  ++G V+ A VRSK++  D++ A+ G++GGEA   T L+NE +  AV      A+ +GA A+V  RF+ +   NRL+ GLH SV+C+GTAVR  S
Sbjct:  391 VATEVPEMSKSSITTAHEQLFFTTRDHINGRQVVEEIGMVSAAAVRSKSVFSDMYVALAGLIGGEAHSYTALMNETMEEAVHRMQFAAQSQGATAIVNVRFDTNTTMNRLVFGLHCSVVCYGTAVRCVS 519          
BLAST of mRNA_M-pyrifera_M_contig75872.17903.1 vs. uniprot
Match: A0A329SCM0_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SCM0_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 8.010e-19
Identity = 45/104 (43.27%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  103 STRDKPHDTIVTADLGDVACAHVRSKNILKDIWTAVGGMVGGEASYATHLINEALAAAVDDAVAQAKDRGANALVKTRFEISLAQNRLIAGLHASVLCHGTAVR 414
            +TRD      V  + G V+   VRSK+++ D++ A+ G+VGGEAS  T L+NE +A AV      A+ +GA AL+  RF+ +   NRL+ G+H SV+C+GTAV+
Sbjct:   38 TTRDHIKGREVLEEFGMVSAVAVRSKSVISDMYVALAGLVGGEASSYTSLMNETMAEAVHRVQYAARAQGATALINVRFDSNTTMNRLVFGMHCSVICYGTAVK 141          
BLAST of mRNA_M-pyrifera_M_contig75872.17903.1 vs. uniprot
Match: A0A6A4A4H5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4A4H5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.940e-18
Identity = 45/109 (41.28%), Postives = 68/109 (62.39%), Query Frame = 1
Query:  103 STRDKPHDTIVTADLGDVACAHVRSKNILKDIWTAVGGMVGGEASYATHLINEALAAAVDDAVAQAKDRGANALVKTRFEISLAQNRLIAGLHASVLCHGTAVRTESKK 429
            +TRD      V  + G V+   VRSK+++ D++ A+ G+VGGEA+  T L+NE +A AV      A+ +GA A++  RF+ +   NRL+ G+H SV+C+GTAVR    K
Sbjct:   37 TTRDHIKGREVLEEFGMVSAVAVRSKSVISDMYVALAGLVGGEAASYTSLMNETMAEAVHRVQYAARAQGATAVINVRFDSNTTMNRLVFGMHCSVICYGTAVRCRPLK 145          
BLAST of mRNA_M-pyrifera_M_contig75872.17903.1 vs. uniprot
Match: A0A813CKH8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CKH8_9DINO)

HSP 1 Score: 87.0 bits (214), Expect = 2.810e-18
Identity = 52/137 (37.96%), Postives = 84/137 (61.31%), Query Frame = 1
Query:   37 VASGVSPLSKQY-AEVN------RQRFRVSTRDKPHDTIVTADLGDVACAHVRSKNILKDIWTAVGGMVGGEASYATHLINEALAAAVDDAVAQAKDRGANALVKTRFEISLAQNRLIAGLHASVLCHGTAVRTESK 426
            + + ++PL+ Q  A+VN      +  F V+T++      +  ++G V+   VR+KN+ KDI +A+ GM GGE ++ +HL+NE+ AA++D  V  A    A+A+V  RF  +   NRLI GLH+ V+ +GTAV+ E K
Sbjct:   21 IPAALAPLAAQVPAQVNFSSDATQPPFPVTTKECLEHYDIVQEIGVVSGGDVRTKNLFKDILSAITGMFGGETTHYSHLLNESSAASMDKLVDHAMKLDADAVVGIRFNTAATMNRLIVGLHSLVMVYGTAVKLEPK 157          
BLAST of mRNA_M-pyrifera_M_contig75872.17903.1 vs. uniprot
Match: A0A8K1CGQ8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGQ8_PYTOL)

HSP 1 Score: 85.1 bits (209), Expect = 4.900e-18
Identity = 45/104 (43.27%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  103 STRDKPHDTIVTADLGDVACAHVRSKNILKDIWTAVGGMVGGEASYATHLINEALAAAVDDAVAQAKDRGANALVKTRFEISLAQNRLIAGLHASVLCHGTAVR 414
            +TRD+ H   V  + G V+ + VRSK+++ D++ A+ G+ GGEAS  T L+NE +A AV      A+  GA A+V  RF+ +   NRL+ G+H SV+ +GTAVR
Sbjct:   35 TTRDRIHGREVLEEYGMVSASAVRSKSVVSDMYVALAGLFGGEASSYTSLMNETMAEAVHRMQYAAQSLGATAVVNVRFDTNTTMNRLVFGMHCSVIAYGTAVR 138          
BLAST of mRNA_M-pyrifera_M_contig75872.17903.1 vs. uniprot
Match: A0A2D4BX62_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BX62_PYTIN)

HSP 1 Score: 84.3 bits (207), Expect = 7.690e-18
Identity = 47/109 (43.12%), Postives = 66/109 (60.55%), Query Frame = 1
Query:   88 QRFRVSTRDKPHDTIVTADLGDVACAHVRSKNILKDIWTAVGGMVGGEASYATHLINEALAAAVDDAVAQAKDRGANALVKTRFEISLAQNRLIAGLHASVLCHGTAVR 414
            QR   +TR + H   +  + G V+ + VRSK++L D++ A+ G+ GGEA   T L+NE  A AV      AK  GA A+V  RF+ +   NRL+ GLH SV+ +GTAVR
Sbjct:   27 QRLYFTTRXRIHGREILEEYGLVSASAVRSKSVLSDMYVALAGLFGGEAPPYTSLMNETTAEAVHRMQYAAKSLGATAVVNVRFDSNTTMNRLVFGLHCSVIAYGTAVR 135          
BLAST of mRNA_M-pyrifera_M_contig75872.17903.1 vs. uniprot
Match: A0A6A4EMA1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4EMA1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.470e-17
Identity = 44/107 (41.12%), Postives = 67/107 (62.62%), Query Frame = 1
Query:  103 STRDKPHDTIVTADLGDVACAHVRSKNILKDIWTAVGGMVGGEASYATHLINEALAAAVDDAVAQAKDRGANALVKTRFEISLAQNRLIAGLHASVLCHGTAVRTES 423
            +TRD      V  + G V+   VRSK+++ D++ A+ G+VGGEA+  T L+NE +A AV      A+ +GA A++  RF+ +   NRL+ G+H SV+C+GTAV   S
Sbjct:   37 TTRDHIKGREVLEEFGMVSAVAVRSKSVISDMYVALAGLVGGEAASYTSLMNETMAEAVHRVQYAARAQGATAVINVRFDSNTTMNRLVFGMHCSVICYGTAVSCPS 143          
BLAST of mRNA_M-pyrifera_M_contig75872.17903.1 vs. uniprot
Match: W2LIT5_PHYPR (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2LIT5_PHYPR)

HSP 1 Score: 83.2 bits (204), Expect = 1.780e-17
Identity = 49/133 (36.84%), Postives = 74/133 (55.64%), Query Frame = 1
Query:   16 PETASAAVASGVSPLSKQYAEVNRQRFRVSTRDKPHDTIVTADLGDVACAHVRSKNILKDIWTAVGGMVGGEASYATHLINEALAAAVDDAVAQAKDRGANALVKTRFEISLAQNRLIAGLHASVLCHGTAVR 414
            P  A +A   G S       E   +    +TR       V  + G V+   VRSK+++ D++ A+ G+VGGEA+  T L+NE +A AV      A+ +GA A++  RF+ +   NRL+ G+H SV+C+GTAVR
Sbjct:   14 PRRAFSAATGGTSAT-----EDRTESLYFTTRGHIKGREVLEEFGMVSAVAVRSKSVISDMYVALAGLVGGEAASYTSLMNETMAEAVHRVQYAARAQGATAVINVRFDSNTTMNRLVFGMHCSVICYGTAVR 141          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75872.17903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CHI0_CAFRO6.410e-2545.45Uncharacterized protein n=4 Tax=Sar TaxID=2698737 ... [more]
A0A7S1GE42_9STRA7.060e-2347.27Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
K3WKP2_GLOUD6.170e-1939.53Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A329SCM0_9STRA8.010e-1943.27Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A6A4A4H5_9STRA1.940e-1841.28Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A813CKH8_9DINO2.810e-1837.96Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A8K1CGQ8_PYTOL4.900e-1843.27Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BX62_PYTIN7.690e-1843.12Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A6A4EMA1_9STRA1.470e-1741.12Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
W2LIT5_PHYPR1.780e-1736.84Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75872contigM-pyrifera_M_contig75872:488..922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue3.7e-17
Seed eggNOG ortholog65071.PYU1_T005534
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Source PGD
EggNOG OGs1MB5H@121069,2S6YJ@2759,COG0393@1
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size435
Cds size435
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816657.6028929-CDS-M-pyrifera_M_contig75872:487..9221622816657.6028929-CDS-M-pyrifera_M_contig75872:487..922Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75872 488..922 +
1692278102.6071737-CDS-M-pyrifera_M_contig75872:487..9221692278102.6071737-CDS-M-pyrifera_M_contig75872:487..922Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75872 488..922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75872.17903.1prot_M-pyrifera_M_contig75872.17903.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75872 488..922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75872.17903.1

>prot_M-pyrifera_M_contig75872.17903.1 ID=prot_M-pyrifera_M_contig75872.17903.1|Name=mRNA_M-pyrifera_M_contig75872.17903.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
MREMEPETASAAVASGVSPLSKQYAEVNRQRFRVSTRDKPHDTIVTADLG
DVACAHVRSKNILKDIWTAVGGMVGGEASYATHLINEALAAAVDDAVAQA
KDRGANALVKTRFEISLAQNRLIAGLHASVLCHGTAVRTESKKST
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mRNA from alignment at M-pyrifera_M_contig75872:488..922+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75872.17903.1 ID=mRNA_M-pyrifera_M_contig75872.17903.1|Name=mRNA_M-pyrifera_M_contig75872.17903.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig75872:488..922+ (Macrocystis pyrifera P11B4 male)
ATGAGGGAGATGGAACCTGAAACTGCATCAGCAGCAGTAGCCAGTGGCGT GTCCCCGTTGTCTAAACAGTATGCAGAGGTGAATCGACAAAGATTTCGGG TATCGACACGCGACAAACCACACGATACTATAGTCACTGCCGACTTGGGA GATGTTGCATGTGCACATGTTCGAAGCAAGAATATTTTGAAAGATATTTG GACGGCTGTTGGAGGAATGGTAGGGGGAGAAGCAAGCTATGCTACACATC TTATCAATGAAGCCCTTGCCGCTGCAGTTGATGATGCAGTAGCACAAGCC AAAGACAGAGGAGCCAATGCTCTTGTGAAAACCAGATTTGAAATCTCTCT CGCTCAAAACAGACTCATTGCTGGGCTACATGCCTCAGTATTATGCCATG GAACAGCAGTTCGAACAGAATCCAAGAAATCAACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75872:488..922+

>mRNA_M-pyrifera_M_contig75872.17903.1 ID=mRNA_M-pyrifera_M_contig75872.17903.1|Name=mRNA_M-pyrifera_M_contig75872.17903.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig75872:488..922+ (Macrocystis pyrifera P11B4 male)
ATGAGGGAGATGGAACCTGAAACTGCATCAGCAGCAGTAGCCAGTGGCGT
GTCCCCGTTGTCTAAACAGTATGCAGAGGTGAATCGACAAAGATTTCGGG
TATCGACACGCGACAAACCACACGATACTATAGTCACTGCCGACTTGGGA
GATGTTGCATGTGCACATGTTCGAAGCAAGAATATTTTGAAAGATATTTG
GACGGCTGTTGGAGGAATGGTAGGGGGAGAAGCAAGCTATGCTACACATC
TTATCAATGAAGCCCTTGCCGCTGCAGTTGATGATGCAGTAGCACAAGCC
AAAGACAGAGGAGCCAATGCTCTTGTGAAAACCAGATTTGAAATCTCTCT
CGCTCAAAACAGACTCATTGCTGGGCTACATGCCTCAGTATTATGCCATG
GAACAGCAGTTCGAACAGAATCCAAGAAATCAACAATGAGGGAGATGGAA
CCTGAAACTGCATCAGCAGCAGTAGCCAGTGGCGTGTCCCCGTTGTCTAA
ACAGTATGCAGAGGTGAATCGACAAAGATTTCGGGTATCGACACGCGACA
AACCACACGATACTATAGTCACTGCCGACTTGGGAGATGTTGCATGTGCA
CATGTTCGAAGCAAGAATATTTTGAAAGATATTTGGACGGCTGTTGGAGG
AATGGTAGGGGGAGAAGCAAGCTATGCTACACATCTTATCAATGAAGCCC
TTGCCGCTGCAGTTGATGATGCAGTAGCACAAGCCAAAGACAGAGGAGCC
AATGCTCTTGTGAAAACCAGATTTGAAATCTCTCTCGCTCAAAACAGACT
CATTGCTGGGCTACATGCCTCAGTATTATGCCATGGAACAGCAGTTCGAA
CAGAATCCAAGAAATCAACA
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