mRNA_M-pyrifera_M_contig75872.17902.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75872.17902.1
Unique NamemRNA_M-pyrifera_M_contig75872.17902.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75872.17902.1 vs. uniprot
Match: A0A813CKH8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CKH8_9DINO)

HSP 1 Score: 85.9 bits (211), Expect = 1.350e-18
Identity = 43/93 (46.24%), Postives = 67/93 (72.04%), Query Frame = 1
Query:    1 VQELGVVVGADVRSRTILHDIFSAIFGVFGGESRLYTALVDENRDAARSRMVEQAKALGATSVVSLREIHGMTVNRIVVGLHTVSVIYGTAVR 279
            VQE+GVV G DVR++ +  DI SAI G+FGGE+  Y+ L++E+  A+  ++V+ A  L A +VV +R     T+NR++VGLH++ ++YGTAV+
Sbjct:   61 VQEIGVVSGGDVRTKNLFKDILSAITGMFGGETTHYSHLLNESSAASMDKLVDHAMKLDADAVVGIRFNTAATMNRLIVGLHSLVMVYGTAVK 153          
BLAST of mRNA_M-pyrifera_M_contig75872.17902.1 vs. uniprot
Match: A0A6U1PGH0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PGH0_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 9.890e-18
Identity = 47/93 (50.54%), Postives = 60/93 (64.52%), Query Frame = 1
Query:    4 QELGVVVGADVRSRTILHDIFSAIFGVFGGESRLYTALVDENRDAARSRMVEQAKALGATSVVSLREIHGMTVNRIVVGLHTVSVIYGTAVRC 282
            +E+G V    V+SR+ILHD+ SAI G FGGES  Y+ L+D+    A  +M   AKA GAT+VV LR  H   +NR+V GLH   + YGTAV C
Sbjct:   71 EEIGFVSAGVVQSRSILHDVASAIKGFFGGESHHYSDLLDQASRDAVIKMARMAKAEGATAVVRLRLNHQAVMNRLVFGLHVSVLAYGTAVIC 163          
BLAST of mRNA_M-pyrifera_M_contig75872.17902.1 vs. uniprot
Match: A0A6G0WFB8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WFB8_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.640e-17
Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    1 VQELGVVVGADVRSRTILHDIFSAIFGVFGGESRLYTALVDENRDAARSRMVEQAKALGATSVVSLREIHGMTVNRIVVGLHTVSVIYGTAVRCR 285
            ++E+G+V    VR++ I+ DIF+A+ GVFGGE+R Y+ L++E    A  R+   A A GAT+VV  +     T+NR + GLH+  ++YGTAV CR
Sbjct:   54 IEEIGIVSATVVRTKNIVEDIFAALGGVFGGETRSYSVLMNETTQEAVHRLKGAAIAQGATAVVMTKFEINTTMNRFIFGLHSTVLVYGTAVVCR 148          
BLAST of mRNA_M-pyrifera_M_contig75872.17902.1 vs. uniprot
Match: A0A3R6Z2M4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6Z2M4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 9.190e-17
Identity = 43/95 (45.26%), Postives = 62/95 (65.26%), Query Frame = 1
Query:    1 VQELGVVVGADVRSRTILHDIFSAIFGVFGGESRLYTALVDENRDAARSRMVEQAKALGATSVVSLREIHGMTVNRIVVGLHTVSVIYGTAVRCR 285
            ++ELGVV    VR++ IL DI +A+ G+FGGE+R Y++L++E    A  R+   A A GA++VV  +     T+NR V GLH   ++YGTAV CR
Sbjct:   35 IEELGVVSATVVRTKNILEDILAALGGMFGGETRSYSSLMNETTQEAVHRLKGAALAQGASAVVMTKFETNTTMNRFVFGLHCTVLVYGTAVVCR 129          
BLAST of mRNA_M-pyrifera_M_contig75872.17902.1 vs. uniprot
Match: A0A5A8CHI0_CAFRO (Uncharacterized protein n=4 Tax=Sar TaxID=2698737 RepID=A0A5A8CHI0_CAFRO)

HSP 1 Score: 77.8 bits (190), Expect = 1.050e-14
Identity = 39/92 (42.39%), Postives = 62/92 (67.39%), Query Frame = 1
Query:    4 QELGVVVGADVRSRTILHDIFSAIFGVFGGESRLYTALVDENRDAARSRMVEQAKALGATSVVSLREIHGMTVNRIVVGLHTVSVIYGTAVR 279
            Q +GVV  A+VRSR ++ D+++A+ G FGGE+  YT L++E+  AA  R V + K LG   +V++R     ++NR+V+G+H   + YGTAV+
Sbjct:  392 QVIGVVSAANVRSRNLMADLWTALAGAFGGEAGYYTHLMNESTSAAMDRAVHRTKELGGDGLVNVRFEMATSMNRLVMGMHASVICYGTAVK 483          
BLAST of mRNA_M-pyrifera_M_contig75872.17902.1 vs. uniprot
Match: E8WLY2_GEOS8 (UPF0145 protein GM18_0213 n=5 Tax=Geobacteraceae TaxID=213422 RepID=E8WLY2_GEOS8)

HSP 1 Score: 64.3 bits (155), Expect = 2.310e-11
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 1
Query:   13 GVVVGADVRSRTILHDIFSAIFGVFGGESRLYTALVDENRDAARSRMVEQAKALGATSVVSLREIHGMTVNRIVVGLHTVSVIYGTAVR 279
            G+V G+ VRS+    DI ++   +FGGE + YT L+D+ R  A +RMVEQA ALGA +VV++R     + + +  G   +  IYGTAVR
Sbjct:   19 GLVCGSTVRSKNAFKDIGASFKNMFGGELKSYTRLLDDTRQEAINRMVEQATALGANAVVNVR----FSTSDVAAGAAEIY-IYGTAVR 102          
BLAST of mRNA_M-pyrifera_M_contig75872.17902.1 vs. uniprot
Match: UPI00141214A8 (YbjQ family protein n=1 Tax=Acutalibacter sp. 1XD8-36 TaxID=2320852 RepID=UPI00141214A8)

HSP 1 Score: 62.0 bits (149), Expect = 1.900e-10
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 1
Query:    1 VQELGVVVGADVRSRTILHDIFSAIFGVFGGESRLYTALVDENRDAARSRMVEQAKALGATSVVSLREIHGMTVNRIVVGLHTVSVIYGTAVR 279
            +Q LGVV G+ ++S+ I  DI      + GGE + YT ++DE R+ A  RMVEQA+ +GA ++VSLR     + + I+ G   V + YGTAV+
Sbjct:   14 IQALGVVTGSTIQSKNIGKDIGQGFKTLVGGELKSYTKMMDEARNIAMQRMVEQAQQMGADAIVSLR----FSGSAIMAGAAEV-LAYGTAVK 101          
BLAST of mRNA_M-pyrifera_M_contig75872.17902.1 vs. uniprot
Match: A0A4V2P8C6_9GAMM (UPF0145 protein EV695_3212 n=1 Tax=Cocleimonas flava TaxID=634765 RepID=A0A4V2P8C6_9GAMM)

HSP 1 Score: 62.0 bits (149), Expect = 2.040e-10
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 1
Query:    4 QELGVVVGADVRSRTILHDIFSAIFGVFGGESRLYTALVDENRDAARSRMVEQAKALGATSVVSLREIHGMTVNRIVVGLHTVSVIYGTAV 276
            + LG+V G+ VR++    DI S I  +FGGE   YT L+ E+R+ A  RM+EQA+++GA +V+++R     + + I  G   + V YGTAV
Sbjct:   16 KHLGLVQGSSVRAKHAGRDIMSGIKNMFGGELTAYTELLQESREEATERMIEQARSVGANAVLNVR----FSTSSITAGAAEIYV-YGTAV 101          
BLAST of mRNA_M-pyrifera_M_contig75872.17902.1 vs. uniprot
Match: A0A832J9A5_9GAMM (UPF0145 protein ENJ65_06075 n=1 Tax=Candidatus Tenderia electrophaga TaxID=1748243 RepID=A0A832J9A5_9GAMM)

HSP 1 Score: 61.6 bits (148), Expect = 2.630e-10
Identity = 28/67 (41.79%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 VQELGVVVGADVRSRTILHDIFSAIFGVFGGESRLYTALVDENRDAARSRMVEQAKALGATSVVSLR 201
            +Q LG+V G  VR++ +  DI + +  +FGGE + YT L+ E+R+ A +RM++QA+A GA +V+++R
Sbjct:   15 IQHLGLVQGNSVRAKHVGRDIMAGLKNIFGGELKGYTELLQESREEAMARMIDQAEAAGANAVLNIR 81          
BLAST of mRNA_M-pyrifera_M_contig75872.17902.1 vs. uniprot
Match: A0A081C1R5_9BACT (UPF0145 protein U27_05494 n=1 Tax=Candidatus Vecturithrix granuli TaxID=1499967 RepID=A0A081C1R5_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 2.630e-10
Identity = 30/67 (44.78%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 VQELGVVVGADVRSRTILHDIFSAIFGVFGGESRLYTALVDENRDAARSRMVEQAKALGATSVVSLR 201
            V+  GVV G+ VR++ I  DI++ I  + GGE + YT L+ E+R  A SRM+++AK LGA ++V++R
Sbjct:   15 VEHFGVVSGSTVRAKHIGKDIWAGIKNIVGGEMKGYTELLQESRQEATSRMIQEAKQLGANAIVNIR 81          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75872.17902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813CKH8_9DINO1.350e-1846.24Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A6U1PGH0_9STRA9.890e-1850.54Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6G0WFB8_9STRA2.640e-1744.21Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A3R6Z2M4_9STRA9.190e-1745.26Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A5A8CHI0_CAFRO1.050e-1442.39Uncharacterized protein n=4 Tax=Sar TaxID=2698737 ... [more]
E8WLY2_GEOS82.310e-1143.82UPF0145 protein GM18_0213 n=5 Tax=Geobacteraceae T... [more]
UPI00141214A81.900e-1041.94YbjQ family protein n=1 Tax=Acutalibacter sp. 1XD8... [more]
A0A4V2P8C6_9GAMM2.040e-1040.66UPF0145 protein EV695_3212 n=1 Tax=Cocleimonas fla... [more]
A0A832J9A5_9GAMM2.630e-1041.79UPF0145 protein ENJ65_06075 n=1 Tax=Candidatus Ten... [more]
A0A081C1R5_9BACT2.630e-1044.78UPF0145 protein U27_05494 n=1 Tax=Candidatus Vectu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75872contigM-pyrifera_M_contig75872:2..286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog36331.EPrPI00000022533
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Source PGD
EggNOG OGs1MB5H@121069,2S6YJ@2759,COG0393@1
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816657.5698647-CDS-M-pyrifera_M_contig75872:1..2861622816657.5698647-CDS-M-pyrifera_M_contig75872:1..286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75872 2..286 +
1692278102.5925803-CDS-M-pyrifera_M_contig75872:1..2861692278102.5925803-CDS-M-pyrifera_M_contig75872:1..286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75872 2..286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75872.17902.1prot_M-pyrifera_M_contig75872.17902.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75872 2..286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75872.17902.1

>prot_M-pyrifera_M_contig75872.17902.1 ID=prot_M-pyrifera_M_contig75872.17902.1|Name=mRNA_M-pyrifera_M_contig75872.17902.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
VQELGVVVGADVRSRTILHDIFSAIFGVFGGESRLYTALVDENRDAARSR
MVEQAKALGATSVVSLREIHGMTVNRIVVGLHTVSVIYGTAVRCR
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mRNA from alignment at M-pyrifera_M_contig75872:2..286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75872.17902.1 ID=mRNA_M-pyrifera_M_contig75872.17902.1|Name=mRNA_M-pyrifera_M_contig75872.17902.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=285bp|location=Sequence derived from alignment at M-pyrifera_M_contig75872:2..286+ (Macrocystis pyrifera P11B4 male)
GTTCAAGAGCTGGGAGTGGTTGTTGGGGCGGATGTGCGATCTAGAACAAT TCTGCATGATATTTTCTCTGCAATATTTGGGGTATTTGGGGGAGAATCGA GACTGTACACGGCTTTGGTGGATGAAAATCGAGATGCAGCCCGATCAAGA ATGGTGGAGCAAGCCAAGGCACTAGGTGCCACATCAGTTGTGTCACTACG TGAAATTCACGGCATGACAGTGAATCGGATTGTTGTGGGGCTGCACACAG TGTCTGTAATTTACGGAACAGCAGTTCGGTGTCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75872:2..286+

>mRNA_M-pyrifera_M_contig75872.17902.1 ID=mRNA_M-pyrifera_M_contig75872.17902.1|Name=mRNA_M-pyrifera_M_contig75872.17902.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig75872:2..286+ (Macrocystis pyrifera P11B4 male)
GTTCAAGAGCTGGGAGTGGTTGTTGGGGCGGATGTGCGATCTAGAACAAT
TCTGCATGATATTTTCTCTGCAATATTTGGGGTATTTGGGGGAGAATCGA
GACTGTACACGGCTTTGGTGGATGAAAATCGAGATGCAGCCCGATCAAGA
ATGGTGGAGCAAGCCAAGGCACTAGGTGCCACATCAGTTGTGTCACTACG
TGAAATTCACGGCATGACAGTGAATCGGATTGTTGTGGGGCTGCACACAG
TGTCTGTAATTTACGGAACAGCAGTTCGGTGTCGTGTTCAAGAGCTGGGA
GTGGTTGTTGGGGCGGATGTGCGATCTAGAACAATTCTGCATGATATTTT
CTCTGCAATATTTGGGGTATTTGGGGGAGAATCGAGACTGTACACGGCTT
TGGTGGATGAAAATCGAGATGCAGCCCGATCAAGAATGGTGGAGCAAGCC
AAGGCACTAGGTGCCACATCAGTTGTGTCACTACGTGAAATTCACGGCAT
GACAGTGAATCGGATTGTTGTGGGGCTGCACACAGTGTCTGTAATTTACG
GAACAGCAGTTCGGTGTCGT
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