mRNA_M-pyrifera_M_contig75726.17863.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75726.17863.1
Unique NamemRNA_M-pyrifera_M_contig75726.17863.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig75726.17863.1 vs. uniprot
Match: A0A0L0DI04_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DI04_THETB)

HSP 1 Score: 170 bits (430), Expect = 8.090e-46
Identity = 109/291 (37.46%), Postives = 151/291 (51.89%), Query Frame = 1 
Query:    1 SDFIPAHFLAVHPLMPTEYAALSGVKTSCFEDLLREHWSPIFISSPHRANHLCSPNFKEAFDEARSKSPVRHMSDGLTMDLRLRKQGTAVDILFSGRCMAHLLIPLNEAFDKEKVPVGTMIGVQAEGGHSLARFYCHDNDGNEITKDTAHFCLDRVKYGNAA-GELVEVNEEE---ALELALLPPGEVWQRKRLIRMMIMAFYMPAHMLAGMLDTVRNNI----PQGQIAVGYVQEWPEFFTGVHPPGGLLSKLCERQEGLQ--CTFRFMCGSMEYFEDQQYLDDDGNFVP 843
            +DF+P  F+ V PL P EY A   ++   + DL+  + SP+FI+SP RA+   +  F+ AF  AR+ SP RH++ G+T+D+RLRK G A+D++FSGRCMA LLIPL  AFDK      T +GV +E G                  DTAHF +D     +   G L  VN  +   A   ALL   E++      R +    Y P  M A ML+ VR  +     Q + AV     WP+FF G   P  +     E   G+    TFRFM   + YFE + +++DDG+ VP
Sbjct:  174 ADFMPHGFVGVFPLHPAEYRACGALRAEDYADLVALYHSPVFITSPARASVHHNEAFEAAFITARNNSPTRHLATGVTVDVRLRKNGKALDVVFSGRCMASLLIPLVSAFDKPAPHPDTFVGVMSEAG------------------DTAHFVVDEFILAHPTQGGLAVVNNPDPAVARAAALLSSQELYYTHNQFRKIEATLYAPPAMFARMLNDVRAEVFDANGQARPAVDLAMSWPQFFAGTTTPPTVAFPQPEAP-GIDGPYTFRFMAADISYFEGEAHINDDGDVVP 445
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75726.17863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0L0DI04_THETB8.090e-4637.46Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75726contigM-pyrifera_M_contig75726:4..897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.6
Seed ortholog evalue2.9e-40
Seed eggNOG ortholog529818.AMSG_07805T0
Hectar predicted targeting categoryother localisation
EggNOG OGs2EV03@1,2SX2H@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size894
Cds size894
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816655.6023579-CDS-M-pyrifera_M_contig75726:3..8971622816655.6023579-CDS-M-pyrifera_M_contig75726:3..897Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75726 4..897 +
1692278101.5400279-CDS-M-pyrifera_M_contig75726:3..8971692278101.5400279-CDS-M-pyrifera_M_contig75726:3..897Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75726 4..897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75726.17863.1prot_M-pyrifera_M_contig75726.17863.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75726 4..897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75726.17863.1

>prot_M-pyrifera_M_contig75726.17863.1 ID=prot_M-pyrifera_M_contig75726.17863.1|Name=mRNA_M-pyrifera_M_contig75726.17863.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=298bp
SDFIPAHFLAVHPLMPTEYAALSGVKTSCFEDLLREHWSPIFISSPHRAN
HLCSPNFKEAFDEARSKSPVRHMSDGLTMDLRLRKQGTAVDILFSGRCMA
HLLIPLNEAFDKEKVPVGTMIGVQAEGGHSLARFYCHDNDGNEITKDTAH
FCLDRVKYGNAAGELVEVNEEEALELALLPPGEVWQRKRLIRMMIMAFYM
PAHMLAGMLDTVRNNIPQGQIAVGYVQEWPEFFTGVHPPGGLLSKLCERQ
EGLQCTFRFMCGSMEYFEDQQYLDDDGNFVPPNSELEDDEDADEDEEE
back to top

mRNA from alignment at M-pyrifera_M_contig75726:4..897+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75726.17863.1 ID=mRNA_M-pyrifera_M_contig75726.17863.1|Name=mRNA_M-pyrifera_M_contig75726.17863.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig75726:4..897+ (Macrocystis pyrifera P11B4 male)
AGTGACTTCATACCAGCCCACTTCCTGGCGGTGCATCCGCTGATGCCGAC
TGAGTACGCAGCGCTGAGTGGTGTGAAGACCAGTTGCTTCGAGGACCTGC
TCCGCGAGCATTGGTCTCCCATCTTCATCTCTTCCCCGCACCGAGCCAAC
CATTTGTGCTCCCCGAACTTCAAGGAGGCCTTCGACGAGGCGAGGAGCAA
GAGCCCTGTCAGGCACATGTCTGACGGCCTGACCATGGACCTTCGTCTGC
GTAAGCAGGGCACCGCTGTGGACATTCTCTTCAGTGGCCGCTGTATGGCT
CACCTGCTCATTCCTTTGAACGAGGCGTTCGACAAGGAGAAGGTACCGGT
TGGTACCATGATTGGAGTGCAGGCAGAGGGAGGCCACTCTTTGGCACGAT
TCTACTGCCATGACAACGACGGCAATGAGATCACAAAGGACACTGCTCAC
TTCTGCCTCGATCGAGTCAAGTATGGAAATGCTGCAGGAGAGCTGGTGGA
AGTGAACGAGGAGGAGGCCCTGGAGTTGGCCCTTCTTCCACCCGGAGAAG
TGTGGCAGAGGAAGAGGCTCATCCGCATGATGATCATGGCGTTCTACATG
CCTGCCCACATGCTGGCGGGCATGCTCGACACTGTGCGTAACAATATCCC
GCAAGGCCAGATTGCTGTTGGCTATGTCCAGGAGTGGCCGGAGTTCTTCA
CTGGCGTACATCCCCCTGGTGGCCTCCTCAGCAAACTCTGTGAGCGTCAA
GAGGGGCTGCAGTGCACCTTTCGCTTCATGTGCGGCTCGATGGAGTACTT
TGAGGACCAGCAGTACCTAGACGACGATGGCAACTTCGTGCCTCCCAACT
CAGAGCTGGAGGATGACGAGGACGCCGACGAAGACGAAGAGGAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig75726:4..897+

>mRNA_M-pyrifera_M_contig75726.17863.1 ID=mRNA_M-pyrifera_M_contig75726.17863.1|Name=mRNA_M-pyrifera_M_contig75726.17863.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1788bp|location=Sequence derived from alignment at M-pyrifera_M_contig75726:4..897+ (Macrocystis pyrifera P11B4 male)
AGTGACTTCATACCAGCCCACTTCCTGGCGGTGCATCCGCTGATGCCGAC
TGAGTACGCAGCGCTGAGTGGTGTGAAGACCAGTTGCTTCGAGGACCTGC
TCCGCGAGCATTGGTCTCCCATCTTCATCTCTTCCCCGCACCGAGCCAAC
CATTTGTGCTCCCCGAACTTCAAGGAGGCCTTCGACGAGGCGAGGAGCAA
GAGCCCTGTCAGGCACATGTCTGACGGCCTGACCATGGACCTTCGTCTGC
GTAAGCAGGGCACCGCTGTGGACATTCTCTTCAGTGGCCGCTGTATGGCT
CACCTGCTCATTCCTTTGAACGAGGCGTTCGACAAGGAGAAGGTACCGGT
TGGTACCATGATTGGAGTGCAGGCAGAGGGAGGCCACTCTTTGGCACGAT
TCTACTGCCATGACAACGACGGCAATGAGATCACAAAGGACACTGCTCAC
TTCTGCCTCGATCGAGTCAAGTATGGAAATGCTGCAGGAGAGCTGGTGGA
AGTGAACGAGGAGGAGGCCCTGGAGTTGGCCCTTCTTCCACCCGGAGAAG
TGTGGCAGAGGAAGAGGCTCATCCGCATGATGATCATGGCGTTCTACATG
CCTGCCCACATGCTGGCGGGCATGCTCGACACTGTGCGTAACAATATCCC
GCAAGGCCAGATTGCTGTTGGCTATGTCCAGGAGTGGCCGGAGTTCTTCA
CTGGCGTACATCCCCCTGGTGGCCTCCTCAGCAAACTCTGTGAGCGTCAA
GAGGGGCTGCAGTGCACCTTTCGCTTCATGTGCGGCTCGATGGAGTACTT
TGAGGACCAGCAGTACCTAGACGACGATGGCAACTTCGTGCCTCCCAACT
CAGAGCTGGAGGATGACGAGGACGCCGACGAAGACGAAGAGGAGAGTGAC
TTCATACCAGCCCACTTCCTGGCGGTGCATCCGCTGATGCCGACTGAGTA
CGCAGCGCTGAGTGGTGTGAAGACCAGTTGCTTCGAGGACCTGCTCCGCG
AGCATTGGTCTCCCATCTTCATCTCTTCCCCGCACCGAGCCAACCATTTG
TGCTCCCCGAACTTCAAGGAGGCCTTCGACGAGGCGAGGAGCAAGAGCCC
TGTCAGGCACATGTCTGACGGCCTGACCATGGACCTTCGTCTGCGTAAGC
AGGGCACCGCTGTGGACATTCTCTTCAGTGGCCGCTGTATGGCTCACCTG
CTCATTCCTTTGAACGAGGCGTTCGACAAGGAGAAGGTACCGGTTGGTAC
CATGATTGGAGTGCAGGCAGAGGGAGGCCACTCTTTGGCACGATTCTACT
GCCATGACAACGACGGCAATGAGATCACAAAGGACACTGCTCACTTCTGC
CTCGATCGAGTCAAGTATGGAAATGCTGCAGGAGAGCTGGTGGAAGTGAA
CGAGGAGGAGGCCCTGGAGTTGGCCCTTCTTCCACCCGGAGAAGTGTGGC
AGAGGAAGAGGCTCATCCGCATGATGATCATGGCGTTCTACATGCCTGCC
CACATGCTGGCGGGCATGCTCGACACTGTGCGTAACAATATCCCGCAAGG
CCAGATTGCTGTTGGCTATGTCCAGGAGTGGCCGGAGTTCTTCACTGGCG
TACATCCCCCTGGTGGCCTCCTCAGCAAACTCTGTGAGCGTCAAGAGGGG
CTGCAGTGCACCTTTCGCTTCATGTGCGGCTCGATGGAGTACTTTGAGGA
CCAGCAGTACCTAGACGACGATGGCAACTTCGTGCCTCCCAACTCAGAGC
TGGAGGATGACGAGGACGCCGACGAAGACGAAGAGGAG
back to top