mRNA_M-pyrifera_M_contig7545.17800.1 (mRNA) Macrocystis pyrifera P11B4 male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig7545.17800.1 vs. uniprot
Match: D7FSU7_ECTSI (FYVE-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSU7_ECTSI) HSP 1 Score: 407 bits (1045), Expect = 2.030e-125 Identity = 340/756 (44.97%), Postives = 410/756 (54.23%), Query Frame = 1 Query: 1 QLCAKLRIGKAAVMGQSLGALFALRCARDEELKEIIEGTTVCLVSPWVPLAAPGCNNVLQTTSTMPTITSTFGRLGGDLMVSTVGDMARGSGGASDIEKGYLDAPYTQDLIEHVSNIKEGKESMKNEVLLALHNKGEEEAKQRCAAVLVNVNIWHGRSDTLVPYAAMKWLERALPLCASSVIPGGTHACVYDKPNMEEVFSTLQKSITDAR---------STARFKARRLSSTLSYVASSVFTSGDAPPEDAAAAGAAGSGVASGPVSAL*TEGLGGGKNGEAVGSGVDPGPGAASEHLNLRDRLVRAISSKNAA--LDSPAQSNPSSTNSSRHGPRREWTLDGAGSGTLV----------SIHGSGHGXXXXXXXXXXXXXXXXXXXAGGSRRAPVVLSSGXXXXXXXXXHG-------SDAAPLPIPENGEVLGWTPNAEGSDRDSASEPGLLGEIGKQMSLALSGAFGSEHGSS--ASAKTVSGCEMMPPPDLRERAGSG---TSFASSLRGAVGKGEKTGVERVTDGFFMRTLD--------RAVSSLSVGGGSSAHGSGWGGSVXXXXXXXGSVGSTGVGGXXXXXXXXXXXRRSSGVLLPWSQQDVGDDREDGLEGEVPSQVSEGKCEGDSDDLVEGLMRGVERALTAVGASAGAPDPPSAAADVGTPRSLIDLSAHCPSESRRLSESRRLSTVSAADSLGGGAGYDAAMANWPAGKVEGNPAWEEWSPEKKLLGHLMTASCLAVIILTW 2145 QLCAKLRIGKAA++GQS+GA+FA+ CAR+EELK++ EGTTVCLVSPWVPLAA GCN LQ S+MP +TST GRLGG++MV VGDMARGS GAS++EKGYL+APYTQDLI+HVS +KEGK S+KNEV LALHNKG EEA +RC V+ V IWHGRSD LVPYAA KWLER+LP C S+VIPGGTHA VYDK +MEEVF+ QK + +AR STARF ARRL S LSYVAS+VF+ D AAA +G +S T+ + E G + LNLR + +AIS +NA+ DS A S S+ + G G XXXXXXXXXXXXXXXXXXX XXXXXXXXX S++AP PIPENGE++G ++ GS S+S GLLGEIGKQ SLAL+G+FG E + AS + P D A G TS S G + +G G D D RA + GGG+ G + G G + S G P +++ V + G PS+V+ S +RG A G SAG+ S G R S + V A D + AGY+AAMANWPAGKVEGNPAWEEWS KKL+ HL+TA CLAVI+LTW Sbjct: 281 QLCAKLRIGKAAMVGQSVGAVFAMDCARNEELKDVFEGTTVCLVSPWVPLAARGCNTFLQKASSMPALTSTVGRLGGEMMVKQVGDMARGSSGASEVEKGYLEAPYTQDLIKHVSGLKEGKGSIKNEVFLALHNKGPEEAMERCTGVIHPVKIWHGRSDQLVPYAATKWLERSLPSCTSAVIPGGTHALVYDKGSMEEVFTAAQKGVQEARVSKEQWKRKSTARFTARRLGSQLSYVASNVFSPRDDTSPSAAAXXXXXXXXTAGMMSPRSTKKVDQATPSEVTAVQEGQAAGKKEDPLNLRKMVAKAIS-RNASGTPDSSAHSLASAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVVGMGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSESAPPPIPENGELVGTLDSSGGSG--SSSPAGLLGEIGKQFSLALNGSFGHEGSDTGEASMPPXXXXXVAKPRDAGATAEKGLQDTSSHSEKTGDMDQGRDGGXXXXEDEATNLDADASGDNRFGRAFTGAGAGGGTPHLNDGGRDESMGPAERAFAAAFGGGGAVCSTPRVTSHPKLSFGT--PVTERVVSTSTSASVYG-TPSRVTP------SXXXXXXXLRGF--AADTAGPSAGSTAGGSGHGSAGPVRK----------------SSFAIEGVVAVDKV---AGYEAAMANWPAGKVEGNPAWEEWSSAKKLVCHLVTAGCLAVIVLTW 1003
BLAST of mRNA_M-pyrifera_M_contig7545.17800.1 vs. uniprot
Match: D7G440_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G440_ECTSI) HSP 1 Score: 139 bits (349), Expect = 5.830e-31 Identity = 149/426 (34.98%), Postives = 183/426 (42.96%), Query Frame = 1 Query: 1135 SSGXXXXXXXXXHGSDAAPLPIPENGEVLGWTPNAEGSDRDSASEPGLLGEIGKQMSLALSGAFGSEHGSSASAKTVSGCEMMPPPDLRERAGSGTSFASSLRGAVGKGEKTGVERVTDGFFMRTLDRAVSSLSVGGGSSAHGSGWGGSVXXXXXXX----------GSVGSTGVGGXXXXXXXXXXXRRSSGVLLPWSQQDVGDDREDGLEGEVPSQVSEGKCEGDSDDLVEGLMRGVERALTAVGASAGAPDPPSAAAD--------------------------VGTPR--SLIDLSAHCPSESRRLSESRRLSTVS-------------------AADSLG-------GG-------------------------AGYDAAMANWPAGKVEGNPAWEEWSPEKKLLGHLMTASCLAVIILTW 2145 S+G HGS++AP PIPENGE++G + GS S+S GLLGEIGKQ SLAL+ +F E + A PPP + + T+ L EKTGV R+ +G ++ +DRAV S+SVG GS XXXXXXX G++GS GVGG RR SG++LPWSQQD+ D DG + + + D+ RA T GA G P D TPR S LS P R +S S S AAD+ G GG AGY+A MANWPAGKVEGNPAWEEWS KKL+ HL+TA CLAVI+LTW Sbjct: 163 STGSQHGSGSSRHGSESAPPPIPENGELVGALDGSGGSG--SSSPAGLLGEIGKQFSLALNRSFNLEGSDTGEASK-------PPPPVSKPRDPRTTAEKGLEDTSSHSEKTGVGRMAEGL-LKQVDRAVPSISVGDGSGXXXXXXXXXXXXXXXXXXXXXXXVASVGALGS-GVGGGS---------RRPSGLVLPWSQQDM-DQGRDGGXXXXXDEATNLDADASGDNRFG-------RAFTGAGAGGGTPHLNDGGHDESMGPAERAFAAAFGXXXXXXXXXAVCSTPRVTSHPKLSFGTPVTERVVSTSTSASIYGTPSRVTPSASVFGTTLRGFAADTAGPSAGSTAGGSGHGSAGPVRKSSFAIEGVVAVDKVAGYEAGMANWPAGKVEGNPAWEEWSSAKKLVCHLVTAGCLAVIVLTW 560
BLAST of mRNA_M-pyrifera_M_contig7545.17800.1 vs. uniprot
Match: D8LJD9_ECTSI (PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJD9_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 6.690e-15 Identity = 62/193 (32.12%), Postives = 99/193 (51.30%), Query Frame = 1 Query: 7 CAKLRIGKAAVMGQSLGALFALRCARDEELKEIIEGTTVCLVSPWVPLAAPGCNNVLQTTSTMPTITSTFGRLGGDLM---VSTVGDMARGSGGASDIEKGYLDAPYTQDLIEHVSNIKEGKESMKNEVLLALHNKGEEEAKQRCAAVLVNVNIWHGRSDTLVPYAAMKWLERALPLCASSVIPGGTHACVYD 576 C + I +++GQSLGA +ALRCA +E+ + + TTV L+SPWVPL+ PG + L +P G G+ M ++ G + G S+ E + T ++++ V + E + + L AL R V + V+++HGR+D +VP+ A +W+ +P C SV GGTHA + D Sbjct: 143 CVEAGIKCFSLVGQSLGASYALRCA--QEMPDKV-ATTVYLISPWVPLSVPGSSRALAKVEKLPEWVIKTGMAMGNAMPRLLAAAGGLGLMVKGCSEGESPMAGSRTTAEVLKAVGSAGEQTRGVAMDALAALEKTQPLGFDYR--DVSMPVHVFHGRADHMVPFPAAQWMAEEMPACTVSVKMGGTHALIMD 330 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7545.17800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig7545.17800.1 >prot_M-pyrifera_M_contig7545.17800.1 ID=prot_M-pyrifera_M_contig7545.17800.1|Name=mRNA_M-pyrifera_M_contig7545.17800.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=283bp MSLALSGAFGSEHGSSASAKTVSGCEMMPPPDLRERAGSGTSFASSLRGAback to top mRNA from alignment at M-pyrifera_M_contig7545:6565..12288- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig7545.17800.1 ID=mRNA_M-pyrifera_M_contig7545.17800.1|Name=mRNA_M-pyrifera_M_contig7545.17800.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5724bp|location=Sequence derived from alignment at M-pyrifera_M_contig7545:6565..12288- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig7545:6565..12288- >mRNA_M-pyrifera_M_contig7545.17800.1 ID=mRNA_M-pyrifera_M_contig7545.17800.1|Name=mRNA_M-pyrifera_M_contig7545.17800.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1698bp|location=Sequence derived from alignment at M-pyrifera_M_contig7545:6565..12288- (Macrocystis pyrifera P11B4 male)back to top |