mRNA_M-pyrifera_M_contig75269.17769.1 (mRNA) Macrocystis pyrifera P11B4 male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig75269.17769.1 vs. uniprot
Match: D8LM18_ECTSI (Eukaryotic translation initiation factor 3 subunit C n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM18_ECTSI) HSP 1 Score: 221 bits (564), Expect = 4.370e-65 Identity = 105/113 (92.92%), Postives = 112/113 (99.12%), Query Frame = 1 Query: 1 ADYTEQLRLLCVTVYQHGNDRCRTRAMLCHITHHALHDRFYPARDLLLMSHLQDNISQADIATQILYNRMMVTLGLCAFRKGLVNDAHDCLRDVCSSRVKELLAQGVQINRFQ 339 ADYTEQL+ LCVTVYQHG+DRCRTRAMLCHITHHALHDRF+PARDLLLMSHLQDNISQADI+TQILYNRMMVTLGLCAFRKGL++DAHDCLRDVCSSRVKELLAQGVQ+NRFQ Sbjct: 604 ADYTEQLKNLCVTVYQHGDDRCRTRAMLCHITHHALHDRFHPARDLLLMSHLQDNISQADISTQILYNRMMVTLGLCAFRKGLIHDAHDCLRDVCSSRVKELLAQGVQMNRFQ 716
BLAST of mRNA_M-pyrifera_M_contig75269.17769.1 vs. uniprot
Match: A0A835YUE3_9STRA (Eukaryotic translation initiation factor 3 subunit C n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUE3_9STRA) HSP 1 Score: 186 bits (472), Expect = 1.980e-52 Identity = 89/112 (79.46%), Postives = 97/112 (86.61%), Query Frame = 1 Query: 4 DYTEQLRLLCVTVYQHGNDRCRTRAMLCHITHHALHDRFYPARDLLLMSHLQDNISQADIATQILYNRMMVTLGLCAFRKGLVNDAHDCLRDVCSSRVKELLAQGVQINRFQ 339 DY +R LCV +Y+HG DR +TRAMLCHITHHALH RF+ ARDLLLMSHLQDNIS D+ TQILYNRMMVTLGLCAFR GL+ DAHDCLRDVCSSRVKELLAQG+Q NRFQ Sbjct: 613 DYAALMRDLCVFLYKHGGDRAKTRAMLCHITHHALHGRFHAARDLLLMSHLQDNISMVDVDTQILYNRMMVTLGLCAFRLGLIADAHDCLRDVCSSRVKELLAQGIQQNRFQ 724
BLAST of mRNA_M-pyrifera_M_contig75269.17769.1 vs. uniprot
Match: F0Y6I4_AURAN (PCI domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6I4_AURAN) HSP 1 Score: 164 bits (415), Expect = 8.760e-45 Identity = 77/111 (69.37%), Postives = 89/111 (80.18%), Query Frame = 1 Query: 4 DYTEQLRLLCVTVYQHGNDRCRTRAMLCHITHHALHDRFYPARDLLLMSHLQDNISQADIATQILYNRMMVTLGLCAFRKGLVNDAHDCLRDVCSSRVKELLAQGVQINRF 336 D + +R LC VY HG+DRCRTRA+LCH+ HHALH RFY ARDLLLMSHLQD +D+ TQILYNR MV LGLCAFR GL++DAH CL ++CSSRVKELLAQG+Q RF Sbjct: 483 DASASVRKLCEYVYAHGDDRCRTRALLCHVAHHALHGRFYVARDLLLMSHLQDTAYMSDVETQILYNRSMVMLGLCAFRNGLIHDAHACLAEICSSRVKELLAQGMQSARF 593
BLAST of mRNA_M-pyrifera_M_contig75269.17769.1 vs. uniprot
Match: A0A7S4E4E4_9STRA (Eukaryotic translation initiation factor 3 subunit C n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E4E4_9STRA) HSP 1 Score: 162 bits (410), Expect = 4.570e-44 Identity = 78/111 (70.27%), Postives = 89/111 (80.18%), Query Frame = 1 Query: 4 DYTEQLRLLCVTVYQHGNDRCRTRAMLCHITHHALHDRFYPARDLLLMSHLQDNISQADIATQILYNRMMVTLGLCAFRKGLVNDAHDCLRDVCSSRVKELLAQGVQINRF 336 D + L+ LC VY HG+DRCRTRA+LCH+ HHALH RF+ ARDLLLMSHLQ+ ADI TQILYNR MV LGLCAFR GLV+DAH CL ++CSSRVKELLAQGVQ R+ Sbjct: 568 DTAKSLKELCGYVYDHGDDRCRTRALLCHVAHHALHGRFHAARDLLLMSHLQEVAHDADIETQILYNRAMVLLGLCAFRSGLVHDAHSCLAEICSSRVKELLAQGVQSARW 678
BLAST of mRNA_M-pyrifera_M_contig75269.17769.1 vs. uniprot
Match: A0A7S2BS49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BS49_9STRA) HSP 1 Score: 157 bits (398), Expect = 1.120e-42 Identity = 74/99 (74.75%), Postives = 83/99 (83.84%), Query Frame = 1 Query: 40 VYQHGNDRCRTRAMLCHITHHALHDRFYPARDLLLMSHLQDNISQADIATQILYNRMMVTLGLCAFRKGLVNDAHDCLRDVCSSRVKELLAQGVQINRF 336 VY+HG+DR RTRAMLCHI HHALHDRFY ARDLLLMSHLQ+NI D+ TQIL+NR MV LGLCAFR GL+ +AH CL D+CSSR KELLAQGVQ R+ Sbjct: 374 VYKHGDDRTRTRAMLCHIAHHALHDRFYDARDLLLMSHLQENIGHTDVTTQILFNRAMVMLGLCAFRLGLIFEAHQCLSDICSSRYKELLAQGVQSMRY 472
BLAST of mRNA_M-pyrifera_M_contig75269.17769.1 vs. uniprot
Match: A0A7S4IV42_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IV42_9STRA) HSP 1 Score: 147 bits (372), Expect = 1.500e-42 Identity = 73/112 (65.18%), Postives = 87/112 (77.68%), Query Frame = 1 Query: 4 DYTEQLRLLCVTVYQHGNDRCRTRAMLCHITHHALHDRFYPARDLLLMSHLQDNISQA-DIATQILYNRMMVTLGLCAFRKGLVNDAHDCLRDVCSSRVKELLAQGVQINRF 336 D + + LC VY++G+DR +TR+MLCHI HHALHDRF ARDLLLMSHLQD IS A D++T +L+NRMMVT+GL AFR G + DAH CL DVCS RV+ELLAQGV RF Sbjct: 33 DSAQLITDLCTYVYKYGSDRSKTRSMLCHIFHHALHDRFLEARDLLLMSHLQDTISNAGDVSTMLLFNRMMVTMGLAAFRLGRIWDAHQCLGDVCSGRVRELLAQGVSSGRF 144
BLAST of mRNA_M-pyrifera_M_contig75269.17769.1 vs. uniprot
Match: A0A7S3XQA8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQA8_HETAK) HSP 1 Score: 151 bits (381), Expect = 4.790e-42 Identity = 69/99 (69.70%), Postives = 81/99 (81.82%), Query Frame = 1 Query: 40 VYQHGNDRCRTRAMLCHITHHALHDRFYPARDLLLMSHLQDNISQADIATQILYNRMMVTLGLCAFRKGLVNDAHDCLRDVCSSRVKELLAQGVQINRF 336 VY+HG DR RTRAMLCHITHHALHDRF+ ARDLLLMSHLQD I D+ TQ+L+NRMM LGL AFR G++ +AH CL ++CS R KELLAQGVQ ++F Sbjct: 38 VYRHGGDRARTRAMLCHITHHALHDRFHQARDLLLMSHLQDTIGHTDVGTQVLFNRMMALLGLAAFRAGMIREAHACLTELCSGRTKELLAQGVQQSKF 136
BLAST of mRNA_M-pyrifera_M_contig75269.17769.1 vs. uniprot
Match: A0A7S2HV13_9STRA (Eukaryotic translation initiation factor 3 subunit C n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HV13_9STRA) HSP 1 Score: 156 bits (395), Expect = 4.890e-42 Identity = 73/99 (73.74%), Postives = 84/99 (84.85%), Query Frame = 1 Query: 40 VYQHGNDRCRTRAMLCHITHHALHDRFYPARDLLLMSHLQDNISQADIATQILYNRMMVTLGLCAFRKGLVNDAHDCLRDVCSSRVKELLAQGVQINRF 336 +Y+HG+DR RTRAMLCHI HHA HDRFY ARDLLLMSHLQ++I AD+ TQIL+NR MV LGLCAFR GL+ DAH CL D+CSSRVKELLAQG+Q R+ Sbjct: 583 IYKHGDDRTRTRAMLCHIAHHAAHDRFYEARDLLLMSHLQEHIGHADVHTQILFNRAMVMLGLCAFRAGLIWDAHQCLSDICSSRVKELLAQGLQSMRY 681
BLAST of mRNA_M-pyrifera_M_contig75269.17769.1 vs. uniprot
Match: A0A6U3ZAQ9_9STRA (Eukaryotic translation initiation factor 3 subunit C n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ZAQ9_9STRA) HSP 1 Score: 155 bits (393), Expect = 9.160e-42 Identity = 78/104 (75.00%), Postives = 84/104 (80.77%), Query Frame = 1 Query: 28 LCVTVYQHGNDRCRTRAMLCHITHHALHDRFYPARDLLLMSHLQDNISQA-DIATQILYNRMMVTLGLCAFRKGLVNDAHDCLRDVCSSRVKELLAQGVQINRF 336 LC VYQHG+DR RTRAMLCHI HHALHDRF ARDLLLMSHLQD IS A D++T IL+NRMMVTLGL AFR G + DAH CL DVCS RV+ELLAQGV RF Sbjct: 653 LCTYVYQHGSDRSRTRAMLCHIYHHALHDRFLDARDLLLMSHLQDTISSAGDVSTMILFNRMMVTLGLAAFRLGRIWDAHQCLSDVCSGRVRELLAQGVSTGRF 756
BLAST of mRNA_M-pyrifera_M_contig75269.17769.1 vs. uniprot
Match: A0A7S2SSJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSJ9_9STRA) HSP 1 Score: 151 bits (381), Expect = 1.840e-41 Identity = 71/99 (71.72%), Postives = 82/99 (82.83%), Query Frame = 1 Query: 40 VYQHGNDRCRTRAMLCHITHHALHDRFYPARDLLLMSHLQDNISQADIATQILYNRMMVTLGLCAFRKGLVNDAHDCLRDVCSSRVKELLAQGVQINRF 336 +++HG+ R RTRAMLC + HHALHDRFY ARDLLLMSH+QDNI D+ TQIL+NR MV LGLCAFR GL+ DAH CL DVCSSRV+ELLAQG+Q RF Sbjct: 111 IFKHGDVRTRTRAMLCQVAHHALHDRFYEARDLLLMSHIQDNIMNTDVHTQILFNRTMVMLGLCAFRAGLIWDAHQCLTDVCSSRVRELLAQGMQSARF 209 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75269.17769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig75269.17769.1 >prot_M-pyrifera_M_contig75269.17769.1 ID=prot_M-pyrifera_M_contig75269.17769.1|Name=mRNA_M-pyrifera_M_contig75269.17769.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp ADYTEQLRLLCVTVYQHGNDRCRTRAMLCHITHHALHDRFYPARDLLLMSback to top mRNA from alignment at M-pyrifera_M_contig75269:269..607+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig75269.17769.1 ID=mRNA_M-pyrifera_M_contig75269.17769.1|Name=mRNA_M-pyrifera_M_contig75269.17769.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig75269:269..607+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig75269:269..607+ >mRNA_M-pyrifera_M_contig75269.17769.1 ID=mRNA_M-pyrifera_M_contig75269.17769.1|Name=mRNA_M-pyrifera_M_contig75269.17769.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig75269:269..607+ (Macrocystis pyrifera P11B4 male)back to top |