mRNA_M-pyrifera_M_contig75006.17719.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75006.17719.1
Unique NamemRNA_M-pyrifera_M_contig75006.17719.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75006.17719.1 vs. uniprot
Match: A0A0L0DBC6_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DBC6_THETB)

HSP 1 Score: 107 bits (267), Expect = 1.290e-24
Identity = 56/128 (43.75%), Postives = 75/128 (58.59%), Query Frame = 1
Query:    1 WPGASEEKIRSICEKGFQ--LTSGGDEGWYGKGI-YLTQMPCYGEFYIDQVQEGVENAQLLLSWAALGKPYPCKDYSHYGAACMEGFDSHYALVKKFR-LCKAEEEPNGDELVLFNPAQVLPRYIVRY 372
            W G     + +IC +GF+  ++   D GWYG G  YLTQ+P YG  YI           LLLSW  +GK YP  +    G   M+GFDSHY LV ++  L  A+ EP GDE+V+F+PA VLPR++V +
Sbjct:  201 WHGTGPAAVDAICAQGFRTGVSKARDSGWYGAGTAYLTQLPNYGMLYIKDNAREPGAFSLLLSWVLMGKVYPVTEVIE-GKPQMDGFDSHYVLVDEYEPLPSADAEPTGDEIVVFDPAAVLPRFVVHF 327          
BLAST of mRNA_M-pyrifera_M_contig75006.17719.1 vs. uniprot
Match: A0A0A1U1M4_ENTIV (PARP catalytic domain-containing protein n=1 Tax=Entamoeba invadens IP1 TaxID=370355 RepID=A0A0A1U1M4_ENTIV)

HSP 1 Score: 72.0 bits (175), Expect = 2.720e-12
Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 1
Query:    7 GASEEKIRSICEKGFQL------TSGGDEGWYGKGIYLTQMPCYGEFYIDQVQEGVENAQLLLSWAALGKPYPCKDYSHYGAACMEGFDSHYALVKKFRLCKAEEEPNGDELVLFNPAQVLPRYIVRY 372
            G+S++ I+SI + GF +      T+  D G++G GIYLT    Y  FY +Q +      Q+LL     GK + CK     G    +G+DSH++             P G+E+V+FNP  +LP+YI+++
Sbjct:  260 GSSQDAIQSISKSGFLMPKNNNKTAQLDSGFFGSGIYLTFYSDYALFYSEQRKSN----QMLLCQVLPGKSFKCKKRMD-GKKLEKGYDSHFS-------------PKGNEIVMFNPKAILPKYIIQF 369          
BLAST of mRNA_M-pyrifera_M_contig75006.17719.1 vs. uniprot
Match: C4LWB1_ENTHI (PARP catalytic domain-containing protein n=8 Tax=Entamoeba TaxID=5758 RepID=C4LWB1_ENTHI)

HSP 1 Score: 67.0 bits (162), Expect = 1.640e-10
Identity = 39/127 (30.71%), Postives = 63/127 (49.61%), Query Frame = 1
Query:    7 GASEEKIRSICEKGFQLTSGGD-----EGWYGKGIYLTQMPCYGEFYIDQVQEGVENAQLLLSWAALGKPYPCKDYSHYGAACMEGFDSHYALVKKFRLCKAEEEPNGDELVLFNPAQVLPRYIVRY 372
            G+S + I+ I ++GF+L    D      G++G GIYLT    Y  FY +         Q++L     G  + CK     G  C +G+DSH++             P G+E+V+F+P  +LP+YI+ +
Sbjct:  263 GSSIDSIQGIIKEGFKLPDDVDAVKLDSGYFGHGIYLTYFSDYALFYSNSRNSN----QMVLCQILPGNVFKCKKRMD-GKKCQKGYDSHFS-------------PKGNEIVIFDPKHILPKYIIEF 371          
BLAST of mRNA_M-pyrifera_M_contig75006.17719.1 vs. uniprot
Match: UPI0006B0F58C (uncharacterized protein LOC106460493 n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0F58C)

HSP 1 Score: 62.0 bits (149), Expect = 1.140e-8
Identity = 39/126 (30.95%), Postives = 59/126 (46.83%), Query Frame = 1
Query:    7 GASEEKIRSICEKGFQL----TSGGDEGWYGKGIYLTQMPCYGEFYIDQVQEGVENAQLLLSWAALGKPYPCKDYSHYGAACMEGFDSHYALVKKFRLCKAEEEPNGDELVLFNPAQVLPRYIVRY 372
            G     ++ I +  F+L     + G+ G YG GIY ++ P    FY            LLL    LGK Y C D +  GA    G+DSH        + + +E+  G  +V+FNP Q+LP Y++ +
Sbjct: 1871 GTPSNNVKEIVKNNFKLEKLGANTGNMGAYGAGIYFSEFPTVSLFY---------GKGLLLCKVLLGKSYKC-DNTMAGAPLQLGYDSH--------INQTDEDGRGKVIVVFNPNQILPCYVINF 1978          
BLAST of mRNA_M-pyrifera_M_contig75006.17719.1 vs. uniprot
Match: L8GI51_ACACA (Poly(ADPribose) polymerase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GI51_ACACA)

HSP 1 Score: 61.6 bits (148), Expect = 1.400e-8
Identity = 44/127 (34.65%), Postives = 60/127 (47.24%), Query Frame = 1
Query:    7 GASEEKIRSICEKGFQL--TSGG-----DEGWYGKGIYLTQMPCYGEFYIDQVQEGVENAQLLLSWAALGKPYPCKDYSHYGAACMEGFDSHYALVKKFRLCKAEEEPNGDELVLFNPAQVLPRYIV 366
            G   + I SI  KG  +  T+ G     D GWYG GIYL+  P       D  Q    + ++L+    +G+ Y C +    G  C  G+DSH +             P G+ELVLF+ AQVLP Y+V
Sbjct:  390 GTRGDLIPSITNKGLLVPGTAPGVEHVTDSGWYGCGIYLSPNP-------DVAQGYAADGKMLVCAVLMGRIYTCPEVME-GVGCRRGYDSHTS-------------PCGEELVLFDAAQVLPCYLV 495          
BLAST of mRNA_M-pyrifera_M_contig75006.17719.1 vs. uniprot
Match: L8HHA2_ACACA (Poly [ADP-ribose] polymerase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HHA2_ACACA)

HSP 1 Score: 60.1 bits (144), Expect = 5.250e-8
Identity = 44/129 (34.11%), Postives = 57/129 (44.19%), Query Frame = 1
Query:    7 GASEEKIRSICEKGFQLTSGG---------DEGWYGKGIYLTQMPCYGEFYIDQVQEGVENAQLLLSWAALGKPYPCKDYSHYGAACMEGFDSHYALVKKFRLCKAEEEPNGDELVLFNPAQVLPRYIV 366
            G +E+ I SI +KG  +   G         D G++G GIYL+        Y           +LL+    +GK + C    H GA  M G DSH A             P G E V+FNPAQVLP Y+V
Sbjct: 1036 GTAEQNIESILDKGLLVPGKGKGKDVGHATDTGFWGGGIYLSPNSSMSVGYCRG------GKKLLICSVLMGKTFQCTTLIH-GADLMAGHDSHTA-------------PGGQEWVIFNPAQVLPCYLV 1144          
BLAST of mRNA_M-pyrifera_M_contig75006.17719.1 vs. uniprot
Match: L8GMB0_ACACA (Poly(ADPribose) polymerase catalytic domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GMB0_ACACA)

HSP 1 Score: 59.7 bits (143), Expect = 6.510e-8
Identity = 34/101 (33.66%), Postives = 52/101 (51.49%), Query Frame = 1
Query:   70 DEGWYGKGIYLTQMPCYGEFYIDQVQEGVENAQLLLSWAALGKPYPCKDYSHYGAACMEGFDSHYALVKKFRLCKAEEEPNGDELVLFNPAQVLPRYIVRY 372
            D+G++GKGIY +    Y  +Y ++ Q      Q+LL     GK Y C D    GA    G+DSH +             P G+E+++F P QV+PRY++ +
Sbjct:  369 DDGFFGKGIYFSIYSDYAMWYSEERQSD----QILLCKVMKGKSYRC-DGRMDGAGRKTGYDSHCS-------------PKGNEIIIFEPDQVMPRYVISF 451          
BLAST of mRNA_M-pyrifera_M_contig75006.17719.1 vs. uniprot
Match: A0A0G4ESL5_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ESL5_VITBC)

HSP 1 Score: 57.4 bits (137), Expect = 4.400e-7
Identity = 41/128 (32.03%), Postives = 59/128 (46.09%), Query Frame = 1
Query:    7 GASEEKIRSICEKGF-------QLTSGGDEGWYGKGIYLTQMPCYGEFYIDQVQEGVENAQLLLSWAALGKPYPCKDYSHYGAACMEGFDSHYALVKKFRLCKAEEEPNGDELVLFNPAQVLPRYIVR 369
            G S  ++RSI  +G         +T   DEG+YG+GIYL+        Y      G E  +LL+    LG+PY C  ++  G   +EGFD+H +              N  E + F P  VLP Y++R
Sbjct:  454 GTSYGRVRSIVRRGLLVPGSANDVTHKTDEGFYGRGIYLSPSASVSFGYC-----GAEG-RLLVCAVLLGRPYRCH-HTILGGTKVEGFDTHMSA-------------NEQEWIFFTPDTVLPVYVIR 561          
BLAST of mRNA_M-pyrifera_M_contig75006.17719.1 vs. uniprot
Match: A0A818A3Q3_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A818A3Q3_9BILA)

HSP 1 Score: 56.6 bits (135), Expect = 5.550e-7
Identity = 43/139 (30.94%), Postives = 62/139 (44.60%), Query Frame = 1
Query:    7 GASEEKIRSICEKGF-------QLTSGG---------DEGWYGKGIYLTQMPCYGEFYIDQVQEGVENAQLLLSWAALGKPYPCK-DYSHYGAACMEGFDSHYALVKKFRLCKAEEEPNGDELVLFNPAQVLPRYIVRY 372
            G+S E +RSI E GF       Q+ S           D G++G+GIY      Y   Y +  +   E   ++LS    G+ Y  K D   +G  C  GF+SH +             P   E+VLF  AQ+LP +I+R+
Sbjct:  130 GSSRECLRSIAENGFLEPKELRQMLSANLESHNIKILDSGYFGRGIYQGFAADYAIHYAEFYKHSDE---IMLSAVLPGRSYVVKKDGEKFGRQCEPGFNSHIS-------------PEVKEIVLFQSAQILPMFIIRF 252          
BLAST of mRNA_M-pyrifera_M_contig75006.17719.1 vs. uniprot
Match: A0A6B2L0H9_9EUKA (SAM domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L0H9_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 1.090e-6
Identity = 41/125 (32.80%), Postives = 56/125 (44.80%), Query Frame = 1
Query:    7 GASEEKIRSICEKGFQLTSGGDEGWYGKGIYLTQMPCYGEFYIDQVQEGVENAQLLLSWAALGKPYPCKDY-SHYGAACMEGFDSHYALVKKFRLC----KAEEEPNGDELVLFNPAQVLPRYIV 366
            G   +    I E GF      DEGWYG+GIYLT    Y   Y D +  G+            G+ YP     S  G + + G+ S+Y +V+    C    K       DEL++FN  QVLP +I+
Sbjct:  439 GTDPKTAWKIAETGFASICKLDEGWYGRGIYLTSDLHYCLDYGDFIIVGL---------VVTGQIYPVTTADSLSGKSALPGYQSNYVVVQNGGDCVNPTKEGMTSYEDELIVFNDTQVLPLFII 554          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75006.17719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A0L0DBC6_THETB1.290e-2443.75Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A0A1U1M4_ENTIV2.720e-1233.59PARP catalytic domain-containing protein n=1 Tax=E... [more]
C4LWB1_ENTHI1.640e-1030.71PARP catalytic domain-containing protein n=8 Tax=E... [more]
UPI0006B0F58C1.140e-830.95uncharacterized protein LOC106460493 n=1 Tax=Limul... [more]
L8GI51_ACACA1.400e-834.65Poly(ADPribose) polymerase n=1 Tax=Acanthamoeba ca... [more]
L8HHA2_ACACA5.250e-834.11Poly [ADP-ribose] polymerase n=1 Tax=Acanthamoeba ... [more]
L8GMB0_ACACA6.510e-833.66Poly(ADPribose) polymerase catalytic domain contai... [more]
A0A0G4ESL5_VITBC4.400e-732.03Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A818A3Q3_9BILA5.550e-730.94Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 ... [more]
A0A6B2L0H9_9EUKA1.090e-632.80SAM domain-containing protein n=1 Tax=Arcella inte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75006contigM-pyrifera_M_contig75006:226..597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue3.6e-21
Seed eggNOG ortholog529818.AMSG_11900T0
KEGG koko:K14300
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
EggNOG free text desc.trans-aconitate 3-methyltransferase activity
EggNOG OGsCOG0500@1,KOG3010@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Exons1
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816648.22734-CDS-M-pyrifera_M_contig75006:225..5971622816648.22734-CDS-M-pyrifera_M_contig75006:225..597Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75006 226..597 +
1692278097.6645997-CDS-M-pyrifera_M_contig75006:225..5971692278097.6645997-CDS-M-pyrifera_M_contig75006:225..597Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75006 226..597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75006.17719.1prot_M-pyrifera_M_contig75006.17719.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75006 226..597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75006.17719.1

>prot_M-pyrifera_M_contig75006.17719.1 ID=prot_M-pyrifera_M_contig75006.17719.1|Name=mRNA_M-pyrifera_M_contig75006.17719.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
WPGASEEKIRSICEKGFQLTSGGDEGWYGKGIYLTQMPCYGEFYIDQVQE
GVENAQLLLSWAALGKPYPCKDYSHYGAACMEGFDSHYALVKKFRLCKAE
EEPNGDELVLFNPAQVLPRYIVRY
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mRNA from alignment at M-pyrifera_M_contig75006:226..597+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75006.17719.1 ID=mRNA_M-pyrifera_M_contig75006.17719.1|Name=mRNA_M-pyrifera_M_contig75006.17719.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig75006:226..597+ (Macrocystis pyrifera P11B4 male)
TGGCCAGGGGCGAGCGAGGAGAAGATCCGCTCCATCTGTGAGAAGGGCTT CCAGCTGACGAGCGGCGGTGACGAGGGCTGGTACGGCAAAGGCATCTATC TGACTCAGATGCCGTGCTACGGCGAGTTCTACATCGACCAAGTGCAGGAG GGCGTGGAGAACGCGCAGCTGCTGCTCTCCTGGGCGGCCCTGGGCAAGCC CTACCCCTGTAAGGACTACAGCCACTATGGCGCAGCCTGCATGGAGGGCT TCGACAGCCACTATGCCCTCGTCAAGAAGTTCCGCCTCTGCAAGGCTGAG GAGGAGCCCAACGGCGACGAGCTGGTCCTCTTCAACCCCGCACAGGTGCT GCCGCGCTACATTGTTCGCTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75006:226..597+

>mRNA_M-pyrifera_M_contig75006.17719.1 ID=mRNA_M-pyrifera_M_contig75006.17719.1|Name=mRNA_M-pyrifera_M_contig75006.17719.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig75006:226..597+ (Macrocystis pyrifera P11B4 male)
TGGCCAGGGGCGAGCGAGGAGAAGATCCGCTCCATCTGTGAGAAGGGCTT
CCAGCTGACGAGCGGCGGTGACGAGGGCTGGTACGGCAAAGGCATCTATC
TGACTCAGATGCCGTGCTACGGCGAGTTCTACATCGACCAAGTGCAGGAG
GGCGTGGAGAACGCGCAGCTGCTGCTCTCCTGGGCGGCCCTGGGCAAGCC
CTACCCCTGTAAGGACTACAGCCACTATGGCGCAGCCTGCATGGAGGGCT
TCGACAGCCACTATGCCCTCGTCAAGAAGTTCCGCCTCTGCAAGGCTGAG
GAGGAGCCCAACGGCGACGAGCTGGTCCTCTTCAACCCCGCACAGGTGCT
GCCGCGCTACATTGTTCGCTACTGGCCAGGGGCGAGCGAGGAGAAGATCC
GCTCCATCTGTGAGAAGGGCTTCCAGCTGACGAGCGGCGGTGACGAGGGC
TGGTACGGCAAAGGCATCTATCTGACTCAGATGCCGTGCTACGGCGAGTT
CTACATCGACCAAGTGCAGGAGGGCGTGGAGAACGCGCAGCTGCTGCTCT
CCTGGGCGGCCCTGGGCAAGCCCTACCCCTGTAAGGACTACAGCCACTAT
GGCGCAGCCTGCATGGAGGGCTTCGACAGCCACTATGCCCTCGTCAAGAA
GTTCCGCCTCTGCAAGGCTGAGGAGGAGCCCAACGGCGACGAGCTGGTCC
TCTTCAACCCCGCACAGGTGCTGCCGCGCTACATTGTTCGCTAC
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