mRNA_M-pyrifera_M_contig74609.17653.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74609.17653.1
Unique NamemRNA_M-pyrifera_M_contig74609.17653.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74609.17653.1 vs. uniprot
Match: A0A7S1GF15_9STRA (Kinesin-like protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GF15_9STRA)

HSP 1 Score: 263 bits (673), Expect = 3.730e-81
Identity = 143/209 (68.42%), Postives = 160/209 (76.56%), Query Frame = 1
Query:   19 LAARDIFRVVATPRFRHLWVCVSFYEIYGGKLFDLLNGRNVLRCLVDARENVHLKGLSEQRADSVDTLLRIIDRGLAARSTGMTGANTDSSRSHAVLQIRLVDPEKPASASSGAPAGAGATAGKMSFIDLAGSERGADTIHSDRRTRLEGAEINKSLLALKECIRALYQEHDHLPFRGSKLTQVLKDSFVGNARSVMVATVSPNSANCE 645
            LA RDIF ++   ++ HL V VSFYEIYGG+LFDLLN R VLR LVD  + V++ GL EQR + +  L RIID GL+ RSTG TGAN DSSRSHAVLQI L+    PA     A  G     GK SFIDLAGSERGADT H+DR+TRLEGAEINKSLLALKECIR+LYQE  H PFRGSKLTQVLKDSF GNAR+VM+ATVSPNS NCE
Sbjct:  128 LATRDIFSMMRDKKYAHLRVHVSFYEIYGGRLFDLLNDRKVLRPLVDGNQAVNIVGLLEQRVNDMHELFRIIDYGLSVRSTGSTGANMDSSRSHAVLQIALMKKIPPAGRGKKATLG---VHGKFSFIDLAGSERGADTQHTDRQTRLEGAEINKSLLALKECIRSLYQESIHTPFRGSKLTQVLKDSFTGNARTVMIATVSPNSGNCE 333          
BLAST of mRNA_M-pyrifera_M_contig74609.17653.1 vs. uniprot
Match: A0A5A8E359_CAFRO (Kinesin-like protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E359_CAFRO)

HSP 1 Score: 266 bits (679), Expect = 6.120e-80
Identity = 142/209 (67.94%), Postives = 159/209 (76.08%), Query Frame = 1
Query:   19 LAARDIFRVVATPRFRHLWVCVSFYEIYGGKLFDLLNGRNVLRCLVDARENVHLKGLSEQRADSVDTLLRIIDRGLAARSTGMTGANTDSSRSHAVLQIRLVDPEKPASASSGAPAGAGATAGKMSFIDLAGSERGADTIHSDRRTRLEGAEINKSLLALKECIRALYQEHDHLPFRGSKLTQVLKDSFVGNARSVMVATVSPNSANCE 645
            LAARDIF  +   R   L   VSF+EIYGGKLFDLLNGR  LR L DA+E V +KGLSEQ   SVD LLR+I+ G AARSTG TGAN DSSRSHA+L I L D               G  +GK SFIDLAGSERG DT H+DRRTRLEGAEINKSLLALKECIR+LYQEHDHLPFRGSKLTQVL+DSFVG++ +VM+ATVSPN+ NC+
Sbjct:  475 LAARDIFAGLTHRRNAGLRPVVSFFEIYGGKLFDLLNGRKQLRALTDAKEEVVVKGLSEQAVSSVDALLRVIEHGNAARSTGSTGANADSSRSHAILSIALCDKRT------------GKMSGKFSFIDLAGSERGGDTTHTDRRTRLEGAEINKSLLALKECIRSLYQEHDHLPFRGSKLTQVLRDSFVGDSLTVMIATVSPNTLNCD 671          
BLAST of mRNA_M-pyrifera_M_contig74609.17653.1 vs. uniprot
Match: A0A7S0JMY1_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JMY1_CAFRO)

HSP 1 Score: 266 bits (679), Expect = 6.090e-79
Identity = 142/209 (67.94%), Postives = 159/209 (76.08%), Query Frame = 1
Query:   19 LAARDIFRVVATPRFRHLWVCVSFYEIYGGKLFDLLNGRNVLRCLVDARENVHLKGLSEQRADSVDTLLRIIDRGLAARSTGMTGANTDSSRSHAVLQIRLVDPEKPASASSGAPAGAGATAGKMSFIDLAGSERGADTIHSDRRTRLEGAEINKSLLALKECIRALYQEHDHLPFRGSKLTQVLKDSFVGNARSVMVATVSPNSANCE 645
            LAARDIF  +   R   L   VSF+EIYGGKLFDLLNGR  LR L DA+E V +KGLSEQ   SVD LLR+I+ G AARSTG TGAN DSSRSHA+L I L D               G  +GK SFIDLAGSERG DT H+DRRTRLEGAEINKSLLALKECIR+LYQEHDHLPFRGSKLTQVL+DSFVG++ +VM+ATVSPN+ NC+
Sbjct:  479 LAARDIFAGLTHRRNAGLRPVVSFFEIYGGKLFDLLNGRKQLRALTDAKEEVVVKGLSEQAVSSVDALLRVIEHGNAARSTGSTGANADSSRSHAILSIALCDKRT------------GKMSGKFSFIDLAGSERGGDTTHTDRRTRLEGAEINKSLLALKECIRSLYQEHDHLPFRGSKLTQVLRDSFVGDSLTVMIATVSPNTLNCD 675          
BLAST of mRNA_M-pyrifera_M_contig74609.17653.1 vs. uniprot
Match: A0A3P3YD31_PLABS (Kinesin-like protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YD31_PLABS)

HSP 1 Score: 239 bits (611), Expect = 3.630e-72
Identity = 131/215 (60.93%), Postives = 154/215 (71.63%), Query Frame = 1
Query:    1 DEWLVHLAARDIFRVVATPRFRHLWVCVSFYEIYGGKLFDLLNGRNVLRCLVDARENVHLKGLSEQRADSVDTLLRIIDRGLAARSTGMTGANTDSSRSHAVLQIRLVDPEKPASASSGAPAGAGATAGKMSFIDLAGSERGADTIHSDRRTRLEGAEINKSLLALKECIRALYQEHDHLPFRGSKLTQVLKDSFVGNARSVMVATVSPNSANCE 645
            +  L  LAA DIF ++A      L V VSF+EIYGGKLFDLLNGR  L    D R+NV + GL E++  SV +LL+II+ G A RSTG TGAN DSSRSHA+LQI L   +   +         G   G++SFIDLAGSERG DT++ DRRTR+EGAEINKSLLALKECIRA  Q H H PFRGSKLTQVLKDSFVGN R++MVA +SPNS +CE
Sbjct:  259 ERGLYALAAEDIFAMLAQQPRADLGVFVSFFEIYGGKLFDLLNGRRQLVAREDRRQNVCIVGLQERQCSSVTSLLQIIESGTALRSTGSTGANIDSSRSHAILQISLCTTKTRTTN--------GRLFGRLSFIDLAGSERGVDTVNQDRRTRIEGAEINKSLLALKECIRAQDQNHKHTPFRGSKLTQVLKDSFVGNCRTIMVANISPNSGSCE 465          
BLAST of mRNA_M-pyrifera_M_contig74609.17653.1 vs. uniprot
Match: A0A6A7G187_9CRUS (Kinesin-like protein n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G187_9CRUS)

HSP 1 Score: 237 bits (604), Expect = 3.330e-71
Identity = 129/210 (61.43%), Postives = 154/210 (73.33%), Query Frame = 1
Query:   19 LAARDIFRVVATPRFRHLWVCVSFYEIYGGKLFDLLNGRNVLRCLVDARENVHLKGLSEQRADSVDTLLRIIDRGLAARSTGMTGANTDSSRSHAVLQIRL-VDPEKPASASSGAPAGAGATAGKMSFIDLAGSERGADTIHSDRRTRLEGAEINKSLLALKECIRALYQEHDHLPFRGSKLTQVLKDSFVGNARSVMVATVSPNSANCE 645
            LA RDI++++  P FR+L V VSF+EIYGGKL+DLLNGR  L    DAR  V + GL E++ D ++ L  +I+ G   RSTG TGAN DSSRSHAVL+I L  D +K                G+ SFIDLAGSERGADTI  DRRTRLEGAEINKSLLALKECIRAL Q+H HLPFRGSKLTQVLK+SF+GN+R+VM+A +SP+S  CE
Sbjct:  258 LAGRDIYKMMIRPEFRNLSVYVSFFEIYGGKLYDLLNGRRKLCPREDARGKVVITGLQERKCDQLENLTNLIEYGNNIRSTGQTGANIDSSRSHAVLRISLKTDQQK--------------LHGRFSFIDLAGSERGADTIQQDRRTRLEGAEINKSLLALKECIRALDQDHVHLPFRGSKLTQVLKESFMGNSRTVMIANISPSSKCCE 453          
BLAST of mRNA_M-pyrifera_M_contig74609.17653.1 vs. uniprot
Match: A0A7S3G361_9EUKA (Kinesin-like protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G361_9EUKA)

HSP 1 Score: 233 bits (593), Expect = 5.320e-70
Identity = 123/215 (57.21%), Postives = 150/215 (69.77%), Query Frame = 1
Query:    1 DEWLVHLAARDIFRVVATPRFRHLWVCVSFYEIYGGKLFDLLNGRNVLRCLVDARENVHLKGLSEQRADSVDTLLRIIDRGLAARSTGMTGANTDSSRSHAVLQIRLVDPEKPASASSGAPAGAGATAGKMSFIDLAGSERGADTIHSDRRTRLEGAEINKSLLALKECIRALYQEHDHLPFRGSKLTQVLKDSFVGNARSVMVATVSPNSANCE 645
            D  L     RDIF+++  P +  L V VSF+EIY GKLFDLLN R  L    D ++ V + GL E+  DS  TL+ +I++G + RS G TGAN DSSRSHA+LQ+ +             P G+  T GK+SFIDLAGSERGADT  +DR+TRLEGAEINKSLLALKECIRAL  +  H+PFRGSKLT VLKDSFVGN R+VM+A VSPN ++CE
Sbjct:  221 DTGLYIQTTRDIFKMLERPEYSKLCVWVSFFEIYAGKLFDLLNNRKRLEAREDGKQQVVICGLQEKMVDSAATLMHVIEKGESVRSVGATGANVDSSRSHAILQMTI------------RPTGSSKTHGKISFIDLAGSERGADTADNDRKTRLEGAEINKSLLALKECIRALDMDSSHIPFRGSKLTSVLKDSFVGNCRTVMIANVSPNISSCE 423          
BLAST of mRNA_M-pyrifera_M_contig74609.17653.1 vs. uniprot
Match: A0A7S1P262_9ALVE (Kinesin-like protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1P262_9ALVE)

HSP 1 Score: 221 bits (562), Expect = 1.490e-68
Identity = 116/206 (56.31%), Postives = 154/206 (74.76%), Query Frame = 1
Query:   28 RDIFRVVATPRFRHLWVCVSFYEIYGGKLFDLLNGRNVLRCLVDARENVHLKGLSEQRADSVDTLLRIIDRGLAARSTGMTGANTDSSRSHAVLQIRLVDPEKPASASSGAPAGAGATAGKMSFIDLAGSERGADTIHSDRRTRLEGAEINKSLLALKECIRALYQEHDHLPFRGSKLTQVLKDSFVGNARSVMVATVSPNSANCE 645
            +DIF+ ++   + +L V V+FYEIY GKLFDLLN RN+L+   ++++ V + GL E+  +SV+ L+  ID GL++R+TG+TGAN DSSRSHA+L + L +  +                GK+SFIDLAGSERGADTI  DR+TR++GAEINKSLLALKECIRAL Q+  H PFRGSKLTQVLKDSF+GN R+VM+A +SP++A+CE
Sbjct:    1 QDIFKKLSRAEYYNLQVYVAFYEIYCGKLFDLLNQRNLLQARENSKQKVVICGLKEECINSVEELMAHIDYGLSSRTTGVTGANVDSSRSHAILVVALKEQREHK------------LHGKLSFIDLAGSERGADTIDQDRQTRMDGAEINKSLLALKECIRALDQQKTHQPFRGSKLTQVLKDSFIGNCRTVMIANLSPSAASCE 194          
BLAST of mRNA_M-pyrifera_M_contig74609.17653.1 vs. uniprot
Match: A0A139ATZ6_GONPJ (Kinesin-like protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139ATZ6_GONPJ)

HSP 1 Score: 223 bits (569), Expect = 1.810e-68
Identity = 121/209 (57.89%), Postives = 148/209 (70.81%), Query Frame = 1
Query:   19 LAARDIFRVVATPRFRHLWVCVSFYEIYGGKLFDLLNGRNVLRCLVDARENVHLKGLSEQRADSVDTLLRIIDRGLAARSTGMTGANTDSSRSHAVLQIRLVDPEKPASASSGAPAGAGATAGKMSFIDLAGSERGADTIHSDRRTRLEGAEINKSLLALKECIRALYQEHDHLPFRGSKLTQVLKDSFVGNARSVMVATVSPNSANCE 645
            LAA+DIF ++  P++ HL+  VSFYEIY G+L+DLLN R  L    D ++ V + GL+E   D+V+ L++I + G  ARSTG TGAN DSSRSHA+LQI L     P               GK SFIDLAGSERGAD   +DR+TR+EG+EINKSLLALKECIRAL Q+  H PFR SKLTQVLKDSF+GN+R+ M+ATVSPNS N E
Sbjct:  162 LAAKDIFTLLELPQYSHLFAWVSFYEIYQGQLYDLLNHRKKLFAREDGKQQVCIAGLAEFDVDNVEKLMQIFEYGNQARSTGQTGANEDSSRSHAILQICLKHRRNPKKVE-----------GKFSFIDLAGSERGADRGETDRQTRMEGSEINKSLLALKECIRALDQDSKHTPFRQSKLTQVLKDSFIGNSRTCMIATVSPNSGNSE 359          
BLAST of mRNA_M-pyrifera_M_contig74609.17653.1 vs. uniprot
Match: A0A813CAH2_9DINO (Kinesin-like protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813CAH2_9DINO)

HSP 1 Score: 226 bits (576), Expect = 5.270e-68
Identity = 125/210 (59.52%), Postives = 152/210 (72.38%), Query Frame = 1
Query:   19 LAARDIFRVVATPRFRHLWVCVSFYEIYGGKLFDLLNGRNVLRCLVDARENVHLKGLSEQRADSVDTLLRIIDRGLAARSTGMTGANTDSSRSHAVLQIRLVDPEKPASASSGAPAGAGATAGKMSFIDLAGSERGADTIHSDRRTRLEGAEINKSLLALKECIRALYQEHDHLPFRGSKLTQVLKDSFVG-NARSVMVATVSPNSANCE 645
            LA++DIFR VA+  + HL V ++FYEIY GKLFDLLN R +L    +A+ NV + GL E    +V  L+ +I+ GL +R+TG+TGAN DSSRSHA+LQI L D E                 GK+SFIDLAGSERGADT+ +DR+TR++GAEINKSLLALKECIRAL Q+ DH PFRGSKLTQVLKDSFVG N R+VM+A VSP S   E
Sbjct:   24 LASQDIFRSVASKDYSHLGVFIAFYEIYCGKLFDLLNNRQILHARENAKGNVVIAGLQEHPVGNVQDLMEVIEFGLNSRTTGVTGANVDSSRSHAILQISLKDLESKEEH------------GKISFIDLAGSERGADTLDTDRQTRMDGAEINKSLLALKECIRALDQQLDHTPFRGSKLTQVLKDSFVGANCRTVMIANVSPCSGAVE 221          
BLAST of mRNA_M-pyrifera_M_contig74609.17653.1 vs. uniprot
Match: A0A167KQL8_PHYB8 (Kinesin-like protein (Fragment) n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167KQL8_PHYB8)

HSP 1 Score: 220 bits (560), Expect = 7.740e-68
Identity = 120/207 (57.97%), Postives = 149/207 (71.98%), Query Frame = 1
Query:   19 LAARDIFRVVATPRFRHLWVCVSFYEIYGGKLFDLLNGRNVLRCLVDARENVHLKGLSEQRADSVDTLLRIIDRGLAARSTGMTGANTDSSRSHAVLQIRLVDPEKPASASSGAPAGAGATAGKMSFIDLAGSERGADTIHSDRRTRLEGAEINKSLLALKECIRALYQEHDHLPFRGSKLTQVLKDSFVGNARSVMVATVSPNSAN 639
            LAARD+F ++  P+++HL   + FYEIY G+L+DLLN R  L    D + NV + GL E    +V+ L+++ + G  ARSTG TGAN+DSSRSHAVLQI L+ PEK               AGK+SFIDLAGSERGAD   +D +TR+EGAEINKSLLALKECIRAL Q+  H PFR SKLTQVLKDSFVGN+R+ M+AT+SPN +N
Sbjct:  135 LAARDVFSLLRQPQYQHLTAWIGFYEIYQGQLYDLLNSRKKLFAREDGKHNVVIVGLKEYVIKNVEDLMQVFEYGSQARSTGSTGANSDSSRSHAVLQI-LLRPEKSRKK----------IAGKLSFIDLAGSERGADRGDADVKTRMEGAEINKSLLALKECIRALDQDKRHTPFRQSKLTQVLKDSFVGNSRTCMIATISPNQSN 330          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74609.17653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1GF15_9STRA3.730e-8168.42Kinesin-like protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A5A8E359_CAFRO6.120e-8067.94Kinesin-like protein n=4 Tax=Cafeteria roenbergens... [more]
A0A7S0JMY1_CAFRO6.090e-7967.94Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A3P3YD31_PLABS3.630e-7260.93Kinesin-like protein n=2 Tax=Plasmodiophora brassi... [more]
A0A6A7G187_9CRUS3.330e-7161.43Kinesin-like protein n=2 Tax=Hirondellea gigas Tax... [more]
A0A7S3G361_9EUKA5.320e-7057.21Kinesin-like protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A7S1P262_9ALVE1.490e-6856.31Kinesin-like protein (Fragment) n=1 Tax=Vitrella b... [more]
A0A139ATZ6_GONPJ1.810e-6857.89Kinesin-like protein n=1 Tax=Gonapodya prolifera (... [more]
A0A813CAH2_9DINO5.270e-6859.52Kinesin-like protein n=1 Tax=Symbiodinium necroapp... [more]
A0A167KQL8_PHYB87.740e-6857.97Kinesin-like protein (Fragment) n=1 Tax=Phycomyces... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74609contigM-pyrifera_M_contig74609:3..647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score234.2
Seed ortholog evalue5.8e-59
Seed eggNOG ortholog130081.XP_005703089.1
KEGG koko:K05692,ko:K10393
KEGG Pathwayko04015,ko04145,ko04210,ko04390,ko04391,ko04510,ko04520,ko04530,ko04611,ko04670,ko04714,ko04745,ko04810,ko04919,ko04921,ko05100,ko05110,ko05130,ko05131,ko05132,ko05164,ko05205,ko05225,ko05410,ko05412,ko05414,ko05416,ko05418,map04015,map04145,map04210,map04390,map04391,map04510,map04520,map04530,map04611,map04670,map04714,map04745,map04810,map04919,map04921,map05100,map05110,map05130,map05131,map05132,map05164,map05205,map05225,map05410,map05412,map05414,map05416,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000278,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0005871,GO:0005875,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0071840,GO:1902850,GO:1903047
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0246@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03029,ko03036,ko04147,ko04812
Exons1
Model size645
Cds size645
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.6747122-CDS-M-pyrifera_M_contig74609:2..6471622816644.6747122-CDS-M-pyrifera_M_contig74609:2..647Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74609 3..647 -
1692278095.7241142-CDS-M-pyrifera_M_contig74609:2..6471692278095.7241142-CDS-M-pyrifera_M_contig74609:2..647Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74609 3..647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74609.17653.1prot_M-pyrifera_M_contig74609.17653.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74609 3..647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74609.17653.1

>prot_M-pyrifera_M_contig74609.17653.1 ID=prot_M-pyrifera_M_contig74609.17653.1|Name=mRNA_M-pyrifera_M_contig74609.17653.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=215bp
DEWLVHLAARDIFRVVATPRFRHLWVCVSFYEIYGGKLFDLLNGRNVLRC
LVDARENVHLKGLSEQRADSVDTLLRIIDRGLAARSTGMTGANTDSSRSH
AVLQIRLVDPEKPASASSGAPAGAGATAGKMSFIDLAGSERGADTIHSDR
RTRLEGAEINKSLLALKECIRALYQEHDHLPFRGSKLTQVLKDSFVGNAR
SVMVATVSPNSANCE
back to top

mRNA from alignment at M-pyrifera_M_contig74609:3..647-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74609.17653.1 ID=mRNA_M-pyrifera_M_contig74609.17653.1|Name=mRNA_M-pyrifera_M_contig74609.17653.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=645bp|location=Sequence derived from alignment at M-pyrifera_M_contig74609:3..647- (Macrocystis pyrifera P11B4 male)
GACGAGTGGCTTGTACATTTGGCTGCTCGCGACATTTTCCGGGTGGTTGC GACGCCTCGGTTCCGTCACTTGTGGGTGTGTGTGTCGTTTTACGAGATTT ACGGGGGCAAGTTGTTCGACTTGTTGAACGGTCGCAATGTGCTGCGGTGT CTTGTGGACGCTCGAGAAAACGTGCATCTCAAGGGTTTGAGCGAGCAACG TGCCGATTCCGTGGACACTCTGCTTCGCATCATTGACAGAGGATTGGCTG CTCGATCCACTGGAATGACGGGAGCCAATACCGATTCTTCAAGATCCCAC GCCGTGCTCCAAATTCGCCTCGTGGATCCAGAAAAGCCAGCATCCGCTTC TTCTGGAGCTCCAGCGGGGGCAGGAGCCACTGCTGGGAAAATGAGCTTCA TCGATTTGGCAGGCTCTGAGCGAGGAGCGGACACGATCCACTCGGACCGA AGGACTCGATTGGAAGGTGCGGAAATCAACAAGTCGTTGCTCGCGCTCAA AGAGTGCATTCGCGCCCTCTACCAAGAGCACGACCACCTCCCTTTTCGCG GCTCCAAGCTCACGCAAGTGCTCAAGGACAGCTTTGTGGGCAACGCCAGG TCCGTTATGGTCGCTACCGTATCTCCAAATTCCGCAAATTGCGAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig74609:3..647-

>mRNA_M-pyrifera_M_contig74609.17653.1 ID=mRNA_M-pyrifera_M_contig74609.17653.1|Name=mRNA_M-pyrifera_M_contig74609.17653.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1290bp|location=Sequence derived from alignment at M-pyrifera_M_contig74609:3..647- (Macrocystis pyrifera P11B4 male)
GACGAGTGGCTTGTACATTTGGCTGCTCGCGACATTTTCCGGGTGGTTGC
GACGCCTCGGTTCCGTCACTTGTGGGTGTGTGTGTCGTTTTACGAGATTT
ACGGGGGCAAGTTGTTCGACTTGTTGAACGGTCGCAATGTGCTGCGGTGT
CTTGTGGACGCTCGAGAAAACGTGCATCTCAAGGGTTTGAGCGAGCAACG
TGCCGATTCCGTGGACACTCTGCTTCGCATCATTGACAGAGGATTGGCTG
CTCGATCCACTGGAATGACGGGAGCCAATACCGATTCTTCAAGATCCCAC
GCCGTGCTCCAAATTCGCCTCGTGGATCCAGAAAAGCCAGCATCCGCTTC
TTCTGGAGCTCCAGCGGGGGCAGGAGCCACTGCTGGGAAAATGAGCTTCA
TCGATTTGGCAGGCTCTGAGCGAGGAGCGGACACGATCCACTCGGACCGA
AGGACTCGATTGGAAGGTGCGGAAATCAACAAGTCGTTGCTCGCGCTCAA
AGAGTGCATTCGCGCCCTCTACCAAGAGCACGACCACCTCCCTTTTCGCG
GCTCCAAGCTCACGCAAGTGCTCAAGGACAGCTTTGTGGGCAACGCCAGG
TCCGTTATGGTCGCTACCGTATCTCCAAATTCCGCAAATTGCGAAGACGA
GTGGCTTGTACATTTGGCTGCTCGCGACATTTTCCGGGTGGTTGCGACGC
CTCGGTTCCGTCACTTGTGGGTGTGTGTGTCGTTTTACGAGATTTACGGG
GGCAAGTTGTTCGACTTGTTGAACGGTCGCAATGTGCTGCGGTGTCTTGT
GGACGCTCGAGAAAACGTGCATCTCAAGGGTTTGAGCGAGCAACGTGCCG
ATTCCGTGGACACTCTGCTTCGCATCATTGACAGAGGATTGGCTGCTCGA
TCCACTGGAATGACGGGAGCCAATACCGATTCTTCAAGATCCCACGCCGT
GCTCCAAATTCGCCTCGTGGATCCAGAAAAGCCAGCATCCGCTTCTTCTG
GAGCTCCAGCGGGGGCAGGAGCCACTGCTGGGAAAATGAGCTTCATCGAT
TTGGCAGGCTCTGAGCGAGGAGCGGACACGATCCACTCGGACCGAAGGAC
TCGATTGGAAGGTGCGGAAATCAACAAGTCGTTGCTCGCGCTCAAAGAGT
GCATTCGCGCCCTCTACCAAGAGCACGACCACCTCCCTTTTCGCGGCTCC
AAGCTCACGCAAGTGCTCAAGGACAGCTTTGTGGGCAACGCCAGGTCCGT
TATGGTCGCTACCGTATCTCCAAATTCCGCAAATTGCGAA
back to top