mRNA_M-pyrifera_M_contig74538.17642.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74538.17642.1
Unique NamemRNA_M-pyrifera_M_contig74538.17642.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74538.17642.1 vs. uniprot
Match: A0A7S1GD93_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GD93_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 8.590e-19
Identity = 40/55 (72.73%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    4 LAESRVVIDGLEKERDFYFSKLRDIEILAQTYKGDDKPFVDQIFKILYATEDDFV 168
            + E R+ +DGLEKERDFYF KLRDIEIL Q Y G DK   D IFKILYATEDDFV
Sbjct:   36 VTELRLSVDGLEKERDFYFGKLRDIEILLQAYAGPDKALADSIFKILYATEDDFV 90
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BLAST of mRNA_M-pyrifera_M_contig74538.17642.1 vs. uniprot
Match: A0A812Q064_9DINO (EB1C protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Q064_9DINO)

HSP 1 Score: 80.5 bits (197), Expect = 4.230e-16
Identity = 36/60 (60.00%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 KLAESRVVIDGLEKERDFYFSKLRDIEILAQTYKGDDKPFVDQIFKILYATEDDFVVPDE 180
            +++E ++ ++GLE+ERDFYF KLRD+EIL QT+ G +K  VD++FKILYATE+DFV  DE
Sbjct:  224 QVSELKLAVEGLERERDFYFGKLRDVEILLQTFTGGEKDLVDKMFKILYATEEDFVTVDE 283
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BLAST of mRNA_M-pyrifera_M_contig74538.17642.1 vs. uniprot
Match: A0A3P8YYF4_ESOLU (Microtubule-associated protein RP/EB family member 3-like n=1 Tax=Esox lucius TaxID=8010 RepID=A0A3P8YYF4_ESOLU)

HSP 1 Score: 75.5 bits (184), Expect = 6.060e-15
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 KLAESRVVIDGLEKERDFYFSKLRDIEILAQTYKGDDKPFVDQIFKILYATEDDFVVPDE 180
            +L E ++ +DGLEKERDFYFSKLRDIE++ Q ++ D  P + +I  ILYATED F  PD+
Sbjct:  165 QLMELKLTVDGLEKERDFYFSKLRDIELICQEHESDSNPHLSRIMDILYATEDGFAAPDD 224
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BLAST of mRNA_M-pyrifera_M_contig74538.17642.1 vs. uniprot
Match: A0A8C7D0B5_ONCKI (Microtubule-associated protein RP/EB family member 3-like n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7D0B5_ONCKI)

HSP 1 Score: 75.1 bits (183), Expect = 1.120e-14
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 KLAESRVVIDGLEKERDFYFSKLRDIEILAQTYKGDDKPFVDQIFKILYATEDDFVVPDE 180
            +L E ++ +DGLEKERDFYFSKLRDIE++ Q ++ D  P + +I  ILYATED F  PD+
Sbjct:  185 QLMELKLTVDGLEKERDFYFSKLRDIELICQEHESDTNPHLSRIMDILYATEDGFAAPDD 244
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BLAST of mRNA_M-pyrifera_M_contig74538.17642.1 vs. uniprot
Match: A0A8C7KR94_ONCKI (Microtubule-associated protein RP/EB family member 3 n=2 Tax=Oncorhynchus TaxID=8016 RepID=A0A8C7KR94_ONCKI)

HSP 1 Score: 75.1 bits (183), Expect = 1.180e-14
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 KLAESRVVIDGLEKERDFYFSKLRDIEILAQTYKGDDKPFVDQIFKILYATEDDFVVPDE 180
            +L E ++ +DGLEKERDFYFSKLRDIE++ Q ++ D  P + +I  ILYATED F  PD+
Sbjct:  189 QLMELKLTVDGLEKERDFYFSKLRDIELICQEHESDTNPHLSRIMDILYATEDGFAAPDD 248
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BLAST of mRNA_M-pyrifera_M_contig74538.17642.1 vs. uniprot
Match: A0A1S3SRD5_SALSA (microtubule-associated protein RP/EB family member 3-like n=4 Tax=Salmoninae TaxID=504568 RepID=A0A1S3SRD5_SALSA)

HSP 1 Score: 75.1 bits (183), Expect = 1.180e-14
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 KLAESRVVIDGLEKERDFYFSKLRDIEILAQTYKGDDKPFVDQIFKILYATEDDFVVPDE 180
            +L E ++ +DGLEKERDFYFSKLRDIE++ Q ++ D  P + +I  ILYATED F  PD+
Sbjct:  189 QLMELKLTVDGLEKERDFYFSKLRDIELICQEHESDTNPHLSRIMDILYATEDGFAAPDD 248
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BLAST of mRNA_M-pyrifera_M_contig74538.17642.1 vs. uniprot
Match: A0A8J5XG02_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XG02_DIALT)

HSP 1 Score: 75.1 bits (183), Expect = 1.210e-14
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 KLAESRVVIDGLEKERDFYFSKLRDIEILAQTYKGDDKPFVDQIFKILYATEDDFVVP 174
            ++ + ++ +DGLEKERDFYF KLRDIEIL QT++    PF+  +  ILY TEDDFV P
Sbjct:  197 EITDLKLTVDGLEKERDFYFGKLRDIEILCQTHEDQSLPFLQNVLSILYQTEDDFVTP 254
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BLAST of mRNA_M-pyrifera_M_contig74538.17642.1 vs. uniprot
Match: A0A4W5LPE1_9TELE (Microtubule-associated protein, RP/EB family, member 3a n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5LPE1_9TELE)

HSP 1 Score: 75.1 bits (183), Expect = 1.240e-14
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 KLAESRVVIDGLEKERDFYFSKLRDIEILAQTYKGDDKPFVDQIFKILYATEDDFVVPDE 180
            +L E ++ +DGLEKERDFYFSKLRDIE++ Q ++ D  P + +I  ILYATED F  PD+
Sbjct:  193 QLMELKLTVDGLEKERDFYFSKLRDIELICQEHESDTNPHLSRIMDILYATEDGFAAPDD 252
[Close]
BLAST of mRNA_M-pyrifera_M_contig74538.17642.1 vs. uniprot
Match: A0A060W2X5_ONCMY (Microtubule-associated protein, RP/EB family, member 3a n=26 Tax=Protacanthopterygii TaxID=41705 RepID=A0A060W2X5_ONCMY)

HSP 1 Score: 75.1 bits (183), Expect = 1.410e-14
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 KLAESRVVIDGLEKERDFYFSKLRDIEILAQTYKGDDKPFVDQIFKILYATEDDFVVPDE 180
            +L E ++ +DGLEKERDFYFSKLRDIE++ Q ++ D  P + +I  ILYATED F  PD+
Sbjct:  204 QLMELKLTVDGLEKERDFYFSKLRDIELICQEHESDTNPHLSRIMDILYATEDGFAAPDD 263
[Close]
BLAST of mRNA_M-pyrifera_M_contig74538.17642.1 vs. uniprot
Match: A0A668AH74_9TELE (Microtubule-associated protein RP/EB family member 3-like n=26 Tax=Euacanthomorphacea TaxID=123369 RepID=A0A668AH74_9TELE)

HSP 1 Score: 74.7 bits (182), Expect = 1.640e-14
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 KLAESRVVIDGLEKERDFYFSKLRDIEILAQTYKGDDKPFVDQIFKILYATEDDFVVPDE 180
            +L E ++ +DGLEKERDFYFSKLRDIE++ Q ++ ++ P + +I  ILYATED F  PD+
Sbjct:  189 QLMELKLTVDGLEKERDFYFSKLRDIELICQEHESENNPILSRIIDILYATEDGFAAPDD 248
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74538.17642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1GD93_9STRA8.590e-1972.73Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A812Q064_9DINO4.230e-1660.00EB1C protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A3P8YYF4_ESOLU6.060e-1556.67Microtubule-associated protein RP/EB family member... [more]
A0A8C7D0B5_ONCKI1.120e-1456.67Microtubule-associated protein RP/EB family member... [more]
A0A8C7KR94_ONCKI1.180e-1456.67Microtubule-associated protein RP/EB family member... [more]
A0A1S3SRD5_SALSA1.180e-1456.67microtubule-associated protein RP/EB family member... [more]
A0A8J5XG02_DIALT1.210e-1456.90Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A4W5LPE1_9TELE1.240e-1456.67Microtubule-associated protein, RP/EB family, memb... [more]
A0A060W2X5_ONCMY1.410e-1456.67Microtubule-associated protein, RP/EB family, memb... [more]
A0A668AH74_9TELE1.640e-1455.00Microtubule-associated protein RP/EB family member... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74538contigM-pyrifera_M_contig74538:796..1005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score76.6
Seed ortholog evalue5e-12
Seed eggNOG ortholog8010.XP_010876783.1
Preferred nameMAPRE3
KEGG koko:K10436
Hectar predicted targeting categoryother localisation
GOsGO:0000022,GO:0000070,GO:0000079,GO:0000226,GO:0000235,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000819,GO:0001700,GO:0001932,GO:0001934,GO:0002252,GO:0002376,GO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005818,GO:0005819,GO:0005856,GO:0005874,GO:0005875,GO:0005876,GO:0005881,GO:0005929,GO:0005938,GO:0006355,GO:0006582,GO:0006725,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007163,GO:0007275,GO:0007423,GO:0007600,GO:0007605,GO:0007610,GO:0007626,GO:0007629,GO:0008017,GO:0008022,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008344,GO:0009611,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0015630,GO:0015631,GO:0016043,GO:0017022,GO:0018958,GO:0019219,GO:0019220,GO:0019222,GO:0019748,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022607,GO:0030424,GO:0030426,GO:0030427,GO:0030496,GO:0030534,GO:0030588,GO:0030589,GO:0030951,GO:0030952,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0032092,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033267,GO:0033674,GO:0035006,GO:0035010,GO:0035011,GO:0035371,GO:0040001,GO:0042060,GO:0042325,GO:0042327,GO:0042440,GO:0042802,GO:0042995,GO:0043005,GO:0043085,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043393,GO:0043549,GO:0044085,GO:0044093,GO:0044237,GO:0044295,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045087,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0048285,GO:0048471,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051098,GO:0051099,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051225,GO:0051231,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051293,GO:0051338,GO:0051347,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0070925,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0071944,GO:0080090,GO:0097458,GO:0097730,GO:0098687,GO:0098813,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120038,GO:0140014,GO:0150034,GO:1901360,GO:1901615,GO:1902680,GO:1902850,GO:1903031,GO:1903033,GO:1903047,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1904526,GO:1904528,GO:1990752,GO:2000112,GO:2001141
EggNOG free text desc.Microtubule-associated protein, RP EB family, member
EggNOG OGs38BT8@33154,3BBXA@33208,3CV8X@33213,4841Z@7711,48VVW@7742,4A0AS@7898,COG5217@1,KOG3000@2759
COG Functional cat.Z
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.2196012-CDS-M-pyrifera_M_contig74538:795..10051622816644.2196012-CDS-M-pyrifera_M_contig74538:795..1005Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74538 796..1005 -
1692278095.4922574-CDS-M-pyrifera_M_contig74538:795..10051692278095.4922574-CDS-M-pyrifera_M_contig74538:795..1005Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74538 796..1005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74538.17642.1prot_M-pyrifera_M_contig74538.17642.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74538 796..1005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74538.17642.1

>prot_M-pyrifera_M_contig74538.17642.1 ID=prot_M-pyrifera_M_contig74538.17642.1|Name=mRNA_M-pyrifera_M_contig74538.17642.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
KLAESRVVIDGLEKERDFYFSKLRDIEILAQTYKGDDKPFVDQIFKILYA
TEDDFVVPDETADAAQDETD
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mRNA from alignment at M-pyrifera_M_contig74538:796..1005-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74538.17642.1 ID=mRNA_M-pyrifera_M_contig74538.17642.1|Name=mRNA_M-pyrifera_M_contig74538.17642.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig74538:796..1005- (Macrocystis pyrifera P11B4 male)
AAATTGGCAGAAAGCCGCGTGGTGATTGACGGGTTGGAAAAAGAGCGCGA
TTTCTACTTTTCCAAGCTGCGGGACATTGAAATCCTCGCACAAACCTACA
AGGGCGACGACAAGCCCTTTGTGGACCAGATCTTCAAGATCCTATACGCC
ACCGAAGACGACTTTGTGGTGCCCGACGAAACTGCAGATGCCGCCCAAGA
CGAAACGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74538:796..1005-

>mRNA_M-pyrifera_M_contig74538.17642.1 ID=mRNA_M-pyrifera_M_contig74538.17642.1|Name=mRNA_M-pyrifera_M_contig74538.17642.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig74538:796..1005- (Macrocystis pyrifera P11B4 male)
AAATTGGCAGAAAGCCGCGTGGTGATTGACGGGTTGGAAAAAGAGCGCGA
TTTCTACTTTTCCAAGCTGCGGGACATTGAAATCCTCGCACAAACCTACA
AGGGCGACGACAAGCCCTTTGTGGACCAGATCTTCAAGATCCTATACGCC
ACCGAAGACGACTTTGTGGTGCCCGACGAAACTGCAGATGCCGCCCAAGA
CGAAACGGACAAATTGGCAGAAAGCCGCGTGGTGATTGACGGGTTGGAAA
AAGAGCGCGATTTCTACTTTTCCAAGCTGCGGGACATTGAAATCCTCGCA
CAAACCTACAAGGGCGACGACAAGCCCTTTGTGGACCAGATCTTCAAGAT
CCTATACGCCACCGAAGACGACTTTGTGGTGCCCGACGAAACTGCAGATG
CCGCCCAAGACGAAACGGAC
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