mRNA_M-pyrifera_M_contig7432.17601.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig7432.17601.1 vs. uniprot
Match: D8LDL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL5_ECTSI) HSP 1 Score: 298 bits (762), Expect = 7.590e-81 Identity = 339/878 (38.61%), Postives = 395/878 (44.99%), Query Frame = 1
Query: 73 VTGEAPSMAGAGGTSALSVADRVVTEYEKLLEAIPTMAQHMWRLQGDTETMAEGLEKRVRSLVDGYRELNELVEQAPSRVIGAASEYAEVLGCRPLWPSLSTGGDGGG--GLDQALDVEGIHRELFALREAKLALDKAVTPTPDFRSRHHRQTGVAASLARGGDGGAISDVSQHRTPSSSTLGARARNRMRADRSSVTMAATGAAAAAVHTATTA-------------------------AVSRTGRSSGRRALVEVQLDPDLPLPLPVFPGYRKTPPLQTGGAARKDVVDMRQRSGVFGN--------PTSVGG--RRGDSSAGGAHGYFVPGVLIPRQRQSHSLPLELRAISTTPKPEEFPPSGSATGRRK----------VRSRPTKSEIGKAPQASP-PRLLSENRHA---------SAGLPPESAAALAVARDQALASAREQREGATRAVDELRKEMREREGRLQRELDKLRSVKMNRAAPEGNATAAA--------------VTGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSRLYGARNXXXXXXXXXXXXXXXXXXXNASSTHADAHAQTVTGEVQLFLPPQPAVQDALRSQDRLRRRPFGETPPGSKPVPVRMGRGVRVDNR---NRHYDEYYRDGXXXXXXXXXXXXXXXXXXPLSPPHPLHAARRVFPXXXVVFLEGEGRNASWRPSDXXXXXXXXXXXXXXXXXXXXVRSEAAGTEEGRPGSCGVEEGEGEVGGGGAAARTLRLTTGRLEPASEV--GAESGEWVELGGMLRLSAAATRAAEIADAVEEPPAAVEGDEKPLGG--------VSASAVSPELLDLMREVVVQQKELSVER 2454
V E + G G S+L+VAD VVTEYEKLL A+PTMA+HM +LQ DTE MAEGLE+RVRSLVDGYRELNELV+QAP RV AASEYA+ LG R S G DG G G D+ALDVEGIHRELFAL+EAK+ALD A+ P ++ ++ G + +H T S+ +R R S A G + T A A T R S RRALVE+Q+DPD PLPLP FPG+ K GG A+ GN P S GG G HGYFVPGV+ P+QRQSH LP ELRAIST P PE+ P S + + P+ P A P PR +E SA P ++A ALASAR+QR RAVD LRKEM ERE RL+ LD+L G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GA N S ADA AQT VQLFL PQPA+++ALR P ++P P G R N + YY D LH V P VVF+EGEGRN WRP+D A+G E G + E G R +RLTTGRLE A+ + G WVEL GML +SAA PP A + L G A+A SPELLDLMREVV QQ+E+ ER
Sbjct: 77 VNSEEGEVVGLPGLSSLNVADAVVTEYEKLLAAVPTMARHMGKLQLDTEVMAEGLERRVRSLVDGYRELNELVDQAPVRVSDAASEYAQALGLRRTQGSPLLG-DGAGMDGSDEALDVEGIHRELFALKEAKIALDAAIMLAPTDPTQRQQRRGA---------------LDRHSTSSARVANRASRGVQGVSRRSGITAVAGGGGERSYRRTVAXXXXXXXXXXXXXXXXXXXXXXXXAAGGVTRRPSDRRALVEMQVDPDRPLPLPTFPGHGKL----LGGEAKHXXXXXXXXQAPSGNSLPGDLKHPGSGGGGGEADQPGEGHYHGYFVPGVVAPKQRQSHGLPRELRAISTIPTPEKRPASRATASXXXXXXXXXXXXXLAQPPSARRAAAVPVAPPLPRQPAEXXXXXXXXXXXXXSASRPDPGSSA-------ALASARDQRRSTRRAVDALRKEMLEREARLEXXLDRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGKRRGSTAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSRDSVGEEAEGADNDDEEGGRGSRPVAR-------SVDTADAQAQTAADGVQLFLHPQPAIREALRV-------------PANQPSPEGHAVGAHQQTRSTGNVVEEHYYLDDASFLSSVSGGGEEDGSGLGRQLGGRLH----VSPPGPVVFVEGEGRNRYWRPADDDRLLRGEGGSSAAAFGATSATG-ASGAEALHSGDARLILAAKEDNDDGRPEREIRLTTGRLEAAAVAPESVQDGAWVELAGMLAMSAA-------------PPTARPSISETLSGEGQAGKSSTEAAAASPELLDLMREVVGQQREMGEER 889
BLAST of mRNA_M-pyrifera_M_contig7432.17601.1 vs. uniprot
Match: A0A6H5L5H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H4_9PHAE) HSP 1 Score: 160 bits (406), Expect = 1.380e-36 Identity = 222/604 (36.75%), Postives = 266/604 (44.04%), Query Frame = 1
Query: 724 TGRSSGRRALVEVQLDPDLPLPLPVFPGYRKTPPLQTGGAARKDVVDMRQRSGVFGN--------PTSVGGRRGDSSAGGAH--GYFVPGVLIPRQRQSHSLPLELRAISTTPKPEEFPPS---GSATG-RRKVRSR-----PTKSEIGKAPQASPPRLLSENRHASAGLPPESAAALAVARDQ-----ALASAREQREGATRAVDELRKEMREREGRLQRELDKLRSVKMNRAAPEGNATAAAVTGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVS-RLYGARNXXXXXXXXXXXXXXXXXXXNASST------HADAHAQTVTGEVQLFLPPQPAVQDALRSQDRLRRRPFGETPPGSKPVPVRMGRGV---RVDNRNRHYDEYYRDGXXXXXXXXXXXXXXXXXXPLSPPHPLHAARRVFPXXXVVFLEGEGRNASWRPSDXXXXXXXXXXXXXXXXXXXXVRSEAAGTEEGRPGSC----GVEEGEGEVGGGGAAARTLRLTTGRLEPASEV--GAESGEWVELGGMLRLSAAATRAAEIADAVEEPPAAVEGDEKPLGGVSASAVSPELLDLMR 2415
T R S RRALVE+Q+DPD PLPLP FPG+ K GG A+ +Q+ GN P S GG GG H GYFVPGV+ PRQRQSH LP ELRAIST P PE+ S SA G RR+VRSR P + A A+PP L ++ A+A P ++ +R ALASAR+QR A RAVD LRKEM ERE R XXXXXXXXXX XXXXXXXXXXXXXXXXXX V+ + GA + S ADA AQT VQL+L PQPA++ ALR G ++P P G + + +E+Y D LS L R V P VVF+EGEGRN SWRP+D A G E+ G +EG E G R +RLTTGRLE A+ ++G WVEL GML +SAA A ++ E P+ + A+A SPELLDLMR
Sbjct: 91 TRRPSDRRALVEMQVDPDRPLPLPTFPGHGKL----LGGEAKHHSNKHQQQQAPSGNNLPGDLKHPGSGGGXXEADQPGGGHYHGYFVPGVVAPRQRQSHGLPRELRAISTIPTPEKRSASRATASAIGQRRRVRSRSALAQPPSARRAAAVPAAPP-LPRQSAEATAIGPGNGGYGVSTSRPDSGSAAALASARDQRMSARRAVDALRKEMLEREARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGRRRGPTASXXXXXXXXXXXXXXXXXXPSSRVQAPTEKPAVAGAVAGAVSRDSADEEAEGADNDGDEGGRGSRPVARSVETADAQAQTAADGVQLYLHPQPAIRKALR---------LG----ANQPSPKGHAAGAHHQQTRSAGNVVEEHYLDDASF----------------LSLSRQLGGRRHVSPPGPVVFVEGEGRNRSWRPADDDRLLRGEGGSSAAAFGATSATG-AGGAEDLDGGDARLILAAKEGGREXDDDGRPERDIRLTTGRLEAAAVAPESVQNGAWVELAGMLAMSAAPPTARP---SISETPSGEGEGQAGKNSTEAAAASPELLDLMR 656
BLAST of mRNA_M-pyrifera_M_contig7432.17601.1 vs. uniprot
Match: A0A6H5K2S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2S2_9PHAE) HSP 1 Score: 125 bits (313), Expect = 1.260e-29 Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 1
Query: 73 VTGEAPSMAGAGGTSALSVADRVVTEYEKLLEAIPTMAQHMWRLQGDTETMAEGLEKRVRSLVDGYRELNELVEQAPSRVIGAASEYAEVLGCR 354
V E + G G S+L+VAD VVTEYEKLL AIPTMA+HM +LQ DTE MAEGLE+RVRSLVDGYRELNELV+QAP+RV AASEYA+ LG R
Sbjct: 27 VNSEEGGVVGVPGLSSLTVADAVVTEYEKLLAAIPTMARHMGKLQLDTEVMAEGLERRVRSLVDGYRELNELVDQAPARVSDAASEYAQALGLR 120 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7432.17601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig7432.17601.1 >prot_M-pyrifera_M_contig7432.17601.1 ID=prot_M-pyrifera_M_contig7432.17601.1|Name=mRNA_M-pyrifera_M_contig7432.17601.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=940bp PAITAIATAAAAAVEGVAAAARGDVTGEAPSMAGAGGTSALSVADRVVTEback to top mRNA from alignment at M-pyrifera_M_contig7432:872..11291+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig7432.17601.1 ID=mRNA_M-pyrifera_M_contig7432.17601.1|Name=mRNA_M-pyrifera_M_contig7432.17601.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=10420bp|location=Sequence derived from alignment at M-pyrifera_M_contig7432:872..11291+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig7432:872..11291+ >mRNA_M-pyrifera_M_contig7432.17601.1 ID=mRNA_M-pyrifera_M_contig7432.17601.1|Name=mRNA_M-pyrifera_M_contig7432.17601.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=5640bp|location=Sequence derived from alignment at M-pyrifera_M_contig7432:872..11291+ (Macrocystis pyrifera P11B4 male)back to top |