mRNA_M-pyrifera_M_contig7430.17600.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7430.17600.1
Unique NamemRNA_M-pyrifera_M_contig7430.17600.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7430.17600.1 vs. uniprot
Match: A0A6H5KZ28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ28_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 2.160e-45
Identity = 85/137 (62.04%), Postives = 96/137 (70.07%), Query Frame = 1
Query:    1 SSYYVSPVTVEIKHSREVEPAVYDREVTLSVLGREFCVAKSLVVLHSPECVEAVKRGDVGIGQLFRALDVLPNFELLNAGR-----------SGAAGGE--GVV----GGIWRVYDLRSKHLSCRIHEEFPPDLFSL 360
            SSYY SPVTV++    EV P VYDREV +SVLG  FCVAKSLVV+H P C EAVK G VG+GQLF +L++LP FELLNAGR           S   GGE  GV     GG WR+YDLRS H+SCRI+EEFPPDLF L
Sbjct:  191 SSYYNSPVTVDVIFCTEVGPGVYDREVEISVLGHVFCVAKSLVVVHDPACAEAVKTGRVGLGQLFHSLNILPRFELLNAGRRVGRSARFSGNSDTIGGEKEGVCTRDDGGFWRLYDLRSGHVSCRIYEEFPPDLFGL 327          
BLAST of mRNA_M-pyrifera_M_contig7430.17600.1 vs. uniprot
Match: A0A835YNG4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNG4_9STRA)

HSP 1 Score: 123 bits (308), Expect = 4.290e-32
Identity = 67/129 (51.94%), Postives = 80/129 (62.02%), Query Frame = 1
Query:    1 SSYYVSPVTVEIKHSREVEPAVYDREVTLSVLGREFCVAKSLVVLHSPECVEAVKRGDVGIGQLFRALDVLPNFELLNAGR---------SGAAGGEGVVGGIWRVYDLRSKHLSCRIHEEFPPDLFSL 360
            SSYY +PV V I         VY+R VTLSV G +FC AKS+VVLHS  C+EAV+   VGIGQLFR LD LP F LL+ G+            A     + GIWR+YDL SKHLSCRI E+F  +LF +
Sbjct:  142 SSYYNAPVDVHIHQCDRQGEHVYERLVTLSVGGVQFCEAKSIVVLHSDACIEAVETKSVGIGQLFRHLDTLPAFTLLSVGQHQPSPSSQTDTGASPTSSISGIWRIYDLESKHLSCRIQEKFADNLFDM 270          
BLAST of mRNA_M-pyrifera_M_contig7430.17600.1 vs. uniprot
Match: A0A7S2L0C0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L0C0_9STRA)

HSP 1 Score: 113 bits (282), Expect = 6.740e-28
Identity = 58/127 (45.67%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    1 SSYYVSPVTVEIKHSRE-------VEPAVYDREVTLSVLGREFCVAKSLVVLHSPECVEAVKRGDVGIGQLFRALDVLPNFELLNAGRSGAAGGEGVVGGIWRVYDLRSKHLSCRIHEEFPPDLFSL 360
            SS+Y SPVTV +    E           V+DR V L V  + FC A S + +H P C E V+ G+VG+GQLFR LD LP F+LL+AGR+ +       GG+WR+Y+L+SK L+C I E+F PD++S+
Sbjct:  181 SSFYDSPVTVVVNSCVERPRLCASENAGVWDRSVDLKVYNKRFCRATSEITVHEPMCAELVRSGEVGLGQLFRYLDKLPTFDLLDAGRTES-------GGMWRLYELKSKELTCSIFEDFSPDVWSM 300          
BLAST of mRNA_M-pyrifera_M_contig7430.17600.1 vs. uniprot
Match: D8LJX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX8_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 2.020e-25
Identity = 53/94 (56.38%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  130 VLHSPECVEAVKRGDVGIGQLFRALDVLPNFELLNAGR-----------SGAAGGE------GVVGGIWRVYDLRSKHLSCRIHEEFPPDLFSL 360
            V+H   C EAVK G VG+GQLF +L++LP FELLNAGR           S   GGE      G  GG WR+YDLRS H+SCRI+EEFPPDLF L
Sbjct:   18 VVHDAACAEAVKTGRVGLGQLFHSLNILPRFELLNAGRRVGRSARFPGNSDTIGGEKEGGCTGEEGGFWRLYDLRSGHVSCRIYEEFPPDLFGL 111          
BLAST of mRNA_M-pyrifera_M_contig7430.17600.1 vs. uniprot
Match: A0A1Z5JUV1_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JUV1_FISSO)

HSP 1 Score: 98.6 bits (244), Expect = 1.270e-23
Identity = 56/122 (45.90%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    1 SSYYVSPVTVEIKHS--REVEPAVYDREVTLSVLGREFCVAKSLVVLHSPECVEAVKRGDVGIGQLFRALDVLPNFELLNAGRSGAAGGEGVVGGIWRVYDLRSKHLSCRIHEEFPPDLFSL 360
            +SYY + V+V ++    R+  P V+DR V L VLG EFC A+S V +    C E V  G VG+GQLFR L+VLP F L  AG       + + GGIWR Y L+   L+C+I EEF P L+ L
Sbjct:   50 ASYYDADVSVRVEGCSFRQENPRVWDRTVYLEVLGVEFCRAESEVTIQQDSCQELVASGQVGLGQLFRYLNVLPMFFLREAGV------DPITGGIWREYTLQCDALTCQIREEFIPGLWEL 165          
BLAST of mRNA_M-pyrifera_M_contig7430.17600.1 vs. uniprot
Match: A0A0L0HN02_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HN02_SPIPD)

HSP 1 Score: 96.7 bits (239), Expect = 1.920e-22
Identity = 55/129 (42.64%), Postives = 73/129 (56.59%), Query Frame = 1
Query:    1 SSYYVSPVTVEIKHSREVEP---------AVYDREVTLSVLGREFCVAKSLVVLHSPECVEAVKRGDVGIGQLFRALDVLPNFELLNAGRSGAAGGEGVVGGIWRVYDLRSKHLSCRIHEEFPPDLFSL 360
            S+YY S V+V+I H+  +           +V+ REV L  L +  C AKS V +  PE +  +    VGIGQLFR L++LP FELL  GR+        V   WR YDLRS  ++CRI EEFP  +F+L
Sbjct:   69 SAYYNSTVSVDIIHNELINEESASNAETESVFRREVNLRCLNQICCNAKSTVTITDPEYLRLILEQQVGIGQLFRYLNILPEFELLQVGRT--------VNSFWREYDLRSNGVNCRIREEFPLGVFNL 189          
BLAST of mRNA_M-pyrifera_M_contig7430.17600.1 vs. uniprot
Match: A0A7S1C1D9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C1D9_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 4.350e-22
Identity = 57/131 (43.51%), Postives = 73/131 (55.73%), Query Frame = 1
Query:    1 SSYYVSPVTVEIKH--------SREVEPAVYDREVTLSVLGREFCVAKSLVVLHSPECVEAVKRGDVGIGQLFRALDVLPNFELLNAGRS---GAAGGEGVVGGIWRVYDLRSKHLSCRIHEEFPPDLFSL 360
            SS+Y +PV+V +          SR V  AV+DR V L V    FC A S+V +H   C   V+ G +G+GQLFR LD LP FEL++AGR+   G  GG    G +WR Y L    L C I EEF  D +S+
Sbjct:   71 SSFYDAPVSVVVVRNEERASAASRRVPSAVWDRSVALVVHDTTFCRAASVVTVHDAGCAALVRSGKIGLGQLFRHLDRLPKFELVDAGRTRSIGVDGGADDEGRLWRRYRLWCDELECDILEEFVADTWSI 201          
BLAST of mRNA_M-pyrifera_M_contig7430.17600.1 vs. uniprot
Match: A0A139AYU2_GONPJ (Uncharacterized protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AYU2_GONPJ)

HSP 1 Score: 95.1 bits (235), Expect = 5.010e-22
Identity = 57/139 (41.01%), Postives = 75/139 (53.96%), Query Frame = 1
Query:    1 SSYYVSPVTVEIKHSREVEPA------------------VYDREVTLSVLGREFCVAKSLVVLHSPECVEAVKRGDVGIGQLFRALDVLPNFELLNAGRSGAAGGEGVVGGIWRVYDLRSKHLSCRIHEEFPPDLFSLA 363
            S+YY SPV+V I  +R+++ A                  V+DREV +  LG+  C A S V + + EC+  V    VGIGQLFR L+VLP+F LLN GRS         G  WR Y L S+ + C I EEFP  +F+ A
Sbjct:   61 SAYYNSPVSVVIVRNRKIDGASNHVPPPGITSKPKNALAVFDREVRIECLGQVCCKAVSTVKILNDECLRLVDEQKVGIGQLFRYLNVLPSFALLNCGRS--------TGQFWRDYALTSEGVRCEIREEFPDGVFNFA 191          
BLAST of mRNA_M-pyrifera_M_contig7430.17600.1 vs. uniprot
Match: A0A0L0FYY7_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FYY7_9EUKA)

HSP 1 Score: 94.4 bits (233), Expect = 2.460e-21
Identity = 53/121 (43.80%), Postives = 74/121 (61.16%), Query Frame = 1
Query:    1 SSYYVSPVTVEIKHSR-EVEPAVYDREVTLSVLGREFCVAKSLVVLHSPECVEAVKRGDVGIGQLFRALDVLPNFELLNAGRSGAAGGEGVVGGIWRVYDLRSKHLSCRIHEEFPPDLFSL 360
            SSYY + VTV+I+H+R   +   YDREV L +  + FC+A S + L   E V+ V+   +G+GQLFR L++LP F LL  GR+         GG+ R Y L+S  ++CRI E FP  LF+L
Sbjct:  117 SSYYNAEVTVKIRHNRPRTDQGWYDREVELLIFDQVFCIATSEIHLDRKEYVDLVEINRIGLGQLFRHLNLLPFFHLLKVGRN-------PEGGLKRTYTLQSPGITCRITETFPRKLFTL 230          
BLAST of mRNA_M-pyrifera_M_contig7430.17600.1 vs. uniprot
Match: A0A7S4MCI6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MCI6_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.440e-21
Identity = 51/122 (41.80%), Postives = 66/122 (54.10%), Query Frame = 1
Query:   58 PAVYDREVTLSVLGREFCVAKSLVVLHSPECVEAVKRGDVGIGQLFRALDVLPNFELLNAGRSGAA---------------------GGEGVVGGIWRVYDLRSKHLSCRIHEEFPPDLFSL 360
            PA +DR V LSV G  FC+A S++ +  PEC+  V  G VGIGQLFR LD LP FEL++AGR  +                      GG     G+WR+Y LR + L C I E+F PD + +
Sbjct:  301 PATWDRTVRLSVHGYAFCIAASVITVRDPECIRLVHSGAVGIGQLFRHLDKLPTFELIDAGRRSSEDVDLGQTEPLEEVKMNLGFGKGGGQADSGLWRLYALRCEELECIIREDFSPDAWEI 422          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7430.17600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZ28_9PHAE2.160e-4562.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YNG4_9STRA4.290e-3251.94Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2L0C0_9STRA6.740e-2845.67Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
D8LJX8_ECTSI2.020e-2556.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Z5JUV1_FISSO1.270e-2345.90Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A0L0HN02_SPIPD1.920e-2242.64Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A7S1C1D9_9STRA4.350e-2243.51Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A139AYU2_GONPJ5.010e-2241.01Uncharacterized protein n=1 Tax=Gonapodya prolifer... [more]
A0A0L0FYY7_9EUKA2.460e-2143.80Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A7S4MCI6_9STRA3.440e-2141.80Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7430contigM-pyrifera_M_contig7430:8384..9478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score95.5
Seed ortholog evalue1.8e-17
Seed eggNOG ortholog109760.SPPG_02677T0
Hectar predicted targeting categoryother localisation
EggNOG OGs2DIV6@1,2S5ZC@2759,3A700@33154,3P6DA@4751
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Exons3
Model size372
Cds size372
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7430.17600.1prot_M-pyrifera_M_contig7430.17600.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7430 8384..9478 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816641.726839-CDS-M-pyrifera_M_contig7430:8383..85091622816641.726839-CDS-M-pyrifera_M_contig7430:8383..8509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7430 8384..8509 -
1692278093.9891024-CDS-M-pyrifera_M_contig7430:8383..85091692278093.9891024-CDS-M-pyrifera_M_contig7430:8383..8509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7430 8384..8509 -
1622816641.7376842-CDS-M-pyrifera_M_contig7430:8590..87071622816641.7376842-CDS-M-pyrifera_M_contig7430:8590..8707Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7430 8591..8707 -
1692278094.0043437-CDS-M-pyrifera_M_contig7430:8590..87071692278094.0043437-CDS-M-pyrifera_M_contig7430:8590..8707Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7430 8591..8707 -
1622816641.748103-CDS-M-pyrifera_M_contig7430:9349..94781622816641.748103-CDS-M-pyrifera_M_contig7430:9349..9478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7430 9350..9478 -
1692278094.0153677-CDS-M-pyrifera_M_contig7430:9349..94781692278094.0153677-CDS-M-pyrifera_M_contig7430:9349..9478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7430 9350..9478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7430.17600.1

>prot_M-pyrifera_M_contig7430.17600.1 ID=prot_M-pyrifera_M_contig7430.17600.1|Name=mRNA_M-pyrifera_M_contig7430.17600.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
SSYYVSPVTVEIKHSREVEPAVYDREVTLSVLGREFCVAKSLVVLHSPEC
VEAVKRGDVGIGQLFRALDVLPNFELLNAGRSGAAGGEGVVGGIWRVYDL
RSKHLSCRIHEEFPPDLFSLAAS*
back to top

mRNA from alignment at M-pyrifera_M_contig7430:8384..9478-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7430.17600.1 ID=mRNA_M-pyrifera_M_contig7430.17600.1|Name=mRNA_M-pyrifera_M_contig7430.17600.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1095bp|location=Sequence derived from alignment at M-pyrifera_M_contig7430:8384..9478- (Macrocystis pyrifera P11B4 male)
AGTTCTTACTACGTCTCACCGGTAACGGTAGAAATCAAGCACTCAAGGGA GGTCGAGCCCGCTGTCTACGATCGCGAGGTCACGCTGTCGGTCTTGGGCC GCGAGTTTTGCGTTGCCAAGAGCCTCGTGGTAAGTTTCGTAGCGATCAAG CCGCACAGCGGGAAAAATGATGGATCGGATAGAATGTAGTCACGAGTATA CGAGTAACCCCTTTATAATTTCCCCCCACGTTTTTGGGGACAGGAACACT TGGAATTAGTGTGGGATATTTTTTGCAGGCAAGAAAAGAAAGAAAAAGGC GGGGGAAAAAAAAGTCCTGAGGGGAGATTCGAATAACTGACCTGGGAGAC GAGAAGACTAGCGAGAATCTGTGTTTGCCTTCATGTAGGTGGTAAGACGT TTTTAGTGGGGGAGAGGGGTGGATTAAAACGTTCCTGGCCTTGTCTCGGA GTCGACCGCGCCGCGGTAAAGTGCGGGGTGTCGGTTGGCGCCAAAAGCCT CTGCCGTTTTACTTTCCGCAAATGCTCGCAGCGAGAGAGACACCGGCGTT CGCATCGGATATACCTGGTATGGACTATGTGATGCGGCGGGGGGGAGTGG GGATAGGGTTGTTCATGTTTGCCTCGCTTTTTCGATTCGCCATCCAGCGA ACGGCGGCGAACTTCTGGCCTGACTCCGCGAGCCGTCTCTCTTGGCCTCT GTTCAGCAGTGCCCCTACCAACTAAGCTACTGCCATCTTTGTCCCCCACG TCTGGTTTGTGTGTGTCCAAGGTGTTGCACAGTCCTGAATGCGTGGAGGC CGTAAAACGGGGGGACGTGGGCATCGGACAGCTGTTCCGAGCCCTCGACG TCCTTCCGAACTTCGAGCTGCTCAACGCCGGCCGCTCCGTCTGGAATCCC TCGGGGGCCGAGAGAGGAAGAGCGCGAGCGAGATATCCGTCGAAAAAGGA GGAGGAGGGGGGGGGAGAGGGGGCGGCGGGGGGGGAGGGAGTGGTGGGAG GCATTTGGCGCGTGTATGACCTCCGCAGCAAGCATCTCAGCTGCCGCATT CACGAAGAGTTTCCGCCGGACTTGTTCTCCTTGGCAGCCTCTTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7430:8384..9478-

>mRNA_M-pyrifera_M_contig7430.17600.1 ID=mRNA_M-pyrifera_M_contig7430.17600.1|Name=mRNA_M-pyrifera_M_contig7430.17600.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig7430:8384..9478- (Macrocystis pyrifera P11B4 male)
AGTTCTTACTACGTCTCACCGGTAACGGTAGAAATCAAGCACTCAAGGGA
GGTCGAGCCCGCTGTCTACGATCGCGAGGTCACGCTGTCGGTCTTGGGCC
GCGAGTTTTGCGTTGCCAAGAGCCTCGTGAGTTCTTACTACGTCTCACCG
GTAACGGTAGAAATCAAGCACTCAAGGGAGGTCGAGCCCGCTGTCTACGA
TCGCGAGGTCACGCTGTCGGTCTTGGGCCGCGAGTTTTGCGTTGCCAAGA
GCCTCGTGGTGTTGCACAGTCCTGAATGCGTGGAGGCCGTAAAACGGGGG
GACGTGGGCATCGGACAGCTGTTCCGAGCCCTCGACGTCCTTCCGAACTT
CGAGCTGCTCAACGCCGGCCGCTCCGTGTTGCACAGTCCTGAATGCGTGG
AGGCCGTAAAACGGGGGGACGTGGGCATCGGACAGCTGTTCCGAGCCCTC
GACGTCCTTCCGAACTTCGAGCTGCTCAACGCCGGCCGCTCCGGGGCGGC
GGGGGGGGAGGGAGTGGTGGGAGGCATTTGGCGCGTGTATGACCTCCGCA
GCAAGCATCTCAGCTGCCGCATTCACGAAGAGTTTCCGCCGGACTTGTTC
TCCTTGGCAGCCTCTTGAGGGGCGGCGGGGGGGGAGGGAGTGGTGGGAGG
CATTTGGCGCGTGTATGACCTCCGCAGCAAGCATCTCAGCTGCCGCATTC
ACGAAGAGTTTCCGCCGGACTTGTTCTCCTTGGCAGCCTCTTGA
back to top