mRNA_M-pyrifera_M_contig74290.17594.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74290.17594.1
Unique NamemRNA_M-pyrifera_M_contig74290.17594.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74290.17594.1 vs. uniprot
Match: A0A813B405_9DINO (Beta-amylase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B405_9DINO)

HSP 1 Score: 128 bits (322), Expect = 1.060e-33
Identity = 62/100 (62.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:    4 AGLCFTALEMQDDEQPASCDCGPYELVRQVKQASIDANTPFSGENALPRFDQTAYSTIETQATALGKDIDDFTYLRLGPKLLDQSNFGTFEAFVSKMKSL 303
            A + FT LEM+D+EQP+ CDCGPYELV+QVK A+  A   F+GENALPR+D TAY TIETQA++LG  I+DFTYLRL   LL  +NFG+F  FV +M +L
Sbjct:  267 AVIDFTCLEMRDNEQPSDCDCGPYELVQQVKGAAHTAGIGFAGENALPRYDATAYGTIETQASSLGFLINDFTYLRLSDTLLQSNNFGSFRNFVQQMANL 366          
BLAST of mRNA_M-pyrifera_M_contig74290.17594.1 vs. uniprot
Match: A0A7S1C583_9STRA (Beta-amylase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C583_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.530e-31
Identity = 58/94 (61.70%), Postives = 73/94 (77.66%), Query Frame = 1
Query:   16 FTALEMQDDEQPASCDCGPYELVRQVKQASIDANTPFSGENALPRFDQTAYSTIETQATALGKDIDDFTYLRLGPKLLDQSNFGTFEAFVSKMK 297
            FT +EM+D++QPASC CGP+ELV+Q K A+  A   F+GENALPR+DQTAY+TI  Q+T+ G DI+DFTYLRLGP LL   N+ TF  FV+ MK
Sbjct:  394 FTCMEMEDNQQPASCACGPFELVQQAKTAADSAGIAFAGENALPRYDQTAYNTIIQQSTSGGHDIEDFTYLRLGPTLLGGGNWNTFTNFVNAMK 487          
BLAST of mRNA_M-pyrifera_M_contig74290.17594.1 vs. uniprot
Match: F4Q0T3_CAVFA (Beta-amylase n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q0T3_CAVFA)

HSP 1 Score: 112 bits (279), Expect = 1.350e-26
Identity = 59/101 (58.42%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 NAGLCFTALEMQDDEQPASCDCGPYELVRQVKQASIDANTPFSGENALPRFDQTAYSTIETQATALGKDIDDFTYLRLGPKLLDQSNFGTFEAFVSKMKSL 303
            N    FT LEM DDEQP+ C+C P ELV Q KQ++  A   +SGENALPR+DQ AYS IET++T L   ID F+YLRL   LL  SNF  F+ FVS MKSL
Sbjct:  607 NVSFDFTCLEMTDDEQPSYCECRPQELVAQTKQSAQQAGIGYSGENALPRYDQGAYSEIETEST-LYFLIDGFSYLRLSSDLLSSSNFPLFQQFVSTMKSL 706          
BLAST of mRNA_M-pyrifera_M_contig74290.17594.1 vs. uniprot
Match: D3AW45_POLPP (Beta-amylase n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3AW45_POLPP)

HSP 1 Score: 102 bits (253), Expect = 4.220e-23
Identity = 53/96 (55.21%), Postives = 63/96 (65.62%), Query Frame = 1
Query:   16 FTALEMQDDEQPASCDCGPYELVRQVKQASIDANTPFSGENALPRFDQTAYSTIETQATALGKDIDDFTYLRLGPKLLDQSNFGTFEAFVSKMKSL 303
            FT LEM+D EQPASC C P ELV Q KQA++ A   +SGENAL R+DQ AYS IE ++T     I  F+YLRL   LL    F  F++FVS M SL
Sbjct:  513 FTCLEMRDSEQPASCLCRPEELVGQTKQAAMQAQISYSGENALQRYDQAAYSEIEYESTRYNFLISGFSYLRLDDYLLSSQAFPLFQSFVSTMSSL 608          
BLAST of mRNA_M-pyrifera_M_contig74290.17594.1 vs. uniprot
Match: A0A151Z5C2_9MYCE (Beta-amylase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z5C2_9MYCE)

HSP 1 Score: 98.6 bits (244), Expect = 4.640e-22
Identity = 49/101 (48.51%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    1 NAGLCFTALEMQDDEQPASCDCGPYELVRQVKQASIDANTPFSGENALPRFDQTAYSTIETQATALGKDIDDFTYLRLGPKLLDQSNFGTFEAFVSKMKSL 303
            N    FT LEM+D EQP++C+CGP +LV Q   ++  A   +SGENAL R+D TAY  IE +++ L   I  F+YLRL P+LL   N GTF +FV  M +L
Sbjct:  351 NVSFDFTCLEMRDSEQPSNCECGPQQLVAQTLLSAESAGVKYSGENALQRYDSTAYQEIEIESS-LYYLISGFSYLRLTPQLLQSPNIGTFASFVQTMSTL 450          
BLAST of mRNA_M-pyrifera_M_contig74290.17594.1 vs. uniprot
Match: A0A7S1Q1P8_ALECA (Beta-amylase n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1Q1P8_ALECA)

HSP 1 Score: 90.9 bits (224), Expect = 1.370e-21
Identity = 47/94 (50.00%), Postives = 62/94 (65.96%), Query Frame = 1
Query:   16 FTALEMQDDEQPASCDCGPYELVRQVKQASIDANTPFSGENALPRFDQTAYSTIETQATALGKDIDDFTYLRLGPKLLDQSNFGTFEAFVSKMK 297
            FT LEM++  QPA C   P +LV+QV  A  +   P SGENAL R+D  AYS I +  +    DI+ FTYLRLGPKL++ +N+  F+ FV+KMK
Sbjct:    2 FTCLEMRNSGQPARCLSRPEDLVQQVLYAGKEKGVPVSGENALQRYDNWAYSKILSYRS----DIEAFTYLRLGPKLVEPANYARFKTFVAKMK 91          
BLAST of mRNA_M-pyrifera_M_contig74290.17594.1 vs. uniprot
Match: A0A812W193_9DINO (Beta-amylase n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812W193_9DINO)

HSP 1 Score: 96.3 bits (238), Expect = 2.830e-21
Identity = 51/99 (51.52%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    4 AGLCFTALEMQDDEQPASCDCGPYELVRQVKQASIDANTPFSGENALPRFDQTAYSTIETQATALGKDIDDFTYLRLGPKLLDQSNFGTFEAFVSKMKS 300
            AG+ FT +EM D EQ A C  GP ELV+QV  A+        GENALPRFD TAYS IE+  + +      FTYLRLG  LL+  N+  F++FVSKM S
Sbjct:  333 AGVDFTCMEMADSEQSADCASGPEELVKQVMAATASHGIALGGENALPRFDDTAYSKIESYKSGM----QVFTYLRLGNDLLNGDNWNRFQSFVSKMHS 427          
BLAST of mRNA_M-pyrifera_M_contig74290.17594.1 vs. uniprot
Match: A0A6B2L506_9EUKA (Beta-amylase n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L506_9EUKA)

HSP 1 Score: 94.4 bits (233), Expect = 1.340e-20
Identity = 49/97 (50.52%), Postives = 65/97 (67.01%), Query Frame = 1
Query:   16 FTALEMQDDEQPA-SCDCGPYELVRQVKQASIDANTPFSGENALPRFDQTAYSTIETQATALGKDIDDFTYLRLGPKLLDQSNFGTFEAFVSKMKSL 303
            FT LEM+D EQP  SC C P  LV Q   A+ +    + GENALPR+DQTAY+TI+ ++  +G  I  FTYLRLG  L+  +NF TF +FV++M +L
Sbjct:  329 FTCLEMRDSEQPGGSCCCSPENLVYQTLVAAKNNGIVYKGENALPRYDQTAYNTIKYESNRVGP-IGGFTYLRLGDTLMQSNNFQTFSSFVNQMHNL 424          
BLAST of mRNA_M-pyrifera_M_contig74290.17594.1 vs. uniprot
Match: A0A8J4PSC2_9MYCE (Beta-amylase n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PSC2_9MYCE)

HSP 1 Score: 93.2 bits (230), Expect = 3.490e-20
Identity = 49/101 (48.51%), Postives = 59/101 (58.42%), Query Frame = 1
Query:    1 NAGLCFTALEMQDDEQPASCDCGPYELVRQVKQASIDANTPFSGENALPRFDQTAYSTIETQATALGKDIDDFTYLRLGPKLLDQSNFGTFEAFVSKMKSL 303
            N    FT LEM+D EQP+ C+CGP ELV Q   ++      +SGENALPR+DQ AYS IE Q++     I  F+YLRL   LL   N   F  FV  M SL
Sbjct:  320 NVAFDFTCLEMRDSEQPSYCECGPQELVSQTLLSAQSQGVVYSGENALPRYDQQAYSEIEYQSSRYYL-ISSFSYLRLSDTLLTSQNLPLFAQFVQSMNSL 419          
BLAST of mRNA_M-pyrifera_M_contig74290.17594.1 vs. uniprot
Match: A0A812V1P2_9DINO (Beta-amylase n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812V1P2_9DINO)

HSP 1 Score: 91.7 bits (226), Expect = 1.220e-19
Identity = 48/99 (48.48%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    4 AGLCFTALEMQDDEQPASCDCGPYELVRQVKQASIDANTPFSGENALPRFDQTAYSTIETQATALGKDIDDFTYLRLGPKLLDQSNFGTFEAFVSKMKS 300
            A + FT +EM D EQ A C  GP ELV+QV +A+        GENALPRFD TAY  IE+  + +    + FTYLRLG  LL+  N+  F+ FVS M S
Sbjct:  312 ASIDFTCMEMADSEQSADCASGPEELVQQVMKATRSRGIALGGENALPRFDDTAYGKIESYKSGM----EVFTYLRLGSDLLNGDNWNRFQGFVSNMHS 406          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74290.17594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813B405_9DINO1.060e-3362.00Beta-amylase n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A7S1C583_9STRA1.530e-3161.70Beta-amylase n=1 Tax=Bicosoecida sp. CB-2014 TaxID... [more]
F4Q0T3_CAVFA1.350e-2658.42Beta-amylase n=1 Tax=Cavenderia fasciculata (strai... [more]
D3AW45_POLPP4.220e-2355.21Beta-amylase n=1 Tax=Polysphondylium pallidum (str... [more]
A0A151Z5C2_9MYCE4.640e-2248.51Beta-amylase n=1 Tax=Tieghemostelium lacteum TaxID... [more]
A0A7S1Q1P8_ALECA1.370e-2150.00Beta-amylase n=1 Tax=Alexandrium catenella TaxID=2... [more]
A0A812W193_9DINO2.830e-2151.52Beta-amylase n=2 Tax=Symbiodinium TaxID=2949 RepID... [more]
A0A6B2L506_9EUKA1.340e-2050.52Beta-amylase n=1 Tax=Arcella intermedia TaxID=1963... [more]
A0A8J4PSC2_9MYCE3.490e-2048.51Beta-amylase n=1 Tax=Polysphondylium violaceum Tax... [more]
A0A812V1P2_9DINO1.220e-1948.48Beta-amylase n=1 Tax=Symbiodinium natans TaxID=878... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74290contigM-pyrifera_M_contig74290:766..1071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score80.9
Seed ortholog evalue3.5e-13
Seed eggNOG ortholog102107.XP_008224054.1
Preferred nameBAM1
KEGG koko:K01177
KEGG ReactionR02112,R11262
KEGG Pathwayko00500,map00500
Hectar predicted targeting categoryother localisation
GOsGO:0000272,GO:0001101,GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005982,GO:0005983,GO:0006073,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009414,GO:0009415,GO:0009628,GO:0009987,GO:0010035,GO:0016052,GO:0016160,GO:0016161,GO:0016787,GO:0016798,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0071704,GO:1901575,GO:1901700
EggNOG free text desc.Beta-amylase
EggNOG OGs2CJU3@1,2QTBX@2759,37IM6@33090,3GEIS@35493,4JMDT@91835
EC3.2.1.2
COG Functional cat.G
CAZyGH14
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size306
Cds size276
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816641.4170256-CDS-M-pyrifera_M_contig74290:765..10411622816641.4170256-CDS-M-pyrifera_M_contig74290:765..1041Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74290 766..1041 -
1692278093.7835202-CDS-M-pyrifera_M_contig74290:765..10411692278093.7835202-CDS-M-pyrifera_M_contig74290:765..1041Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74290 766..1041 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816641.429889-UTR-M-pyrifera_M_contig74290:1041..10711622816641.429889-UTR-M-pyrifera_M_contig74290:1041..1071Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74290 1042..1071 -
1692278093.8108785-UTR-M-pyrifera_M_contig74290:1041..10711692278093.8108785-UTR-M-pyrifera_M_contig74290:1041..1071Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74290 1042..1071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74290.17594.1prot_M-pyrifera_M_contig74290.17594.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74290 766..1041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74290.17594.1

>prot_M-pyrifera_M_contig74290.17594.1 ID=prot_M-pyrifera_M_contig74290.17594.1|Name=mRNA_M-pyrifera_M_contig74290.17594.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
MQDDEQPASCDCGPYELVRQVKQASIDANTPFSGENALPRFDQTAYSTIE
TQATALGKDIDDFTYLRLGPKLLDQSNFGTFEAFVSKMKSL*
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mRNA from alignment at M-pyrifera_M_contig74290:766..1071-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74290.17594.1 ID=mRNA_M-pyrifera_M_contig74290.17594.1|Name=mRNA_M-pyrifera_M_contig74290.17594.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig74290:766..1071- (Macrocystis pyrifera P11B4 male)
AATGCTGGTCTCTGTTTCACAGCTCTCGAAATGCAGGACGATGAGCAGCC TGCTTCTTGTGATTGTGGTCCTTATGAACTTGTGAGACAGGTGAAGCAAG CGTCGATTGACGCCAATACCCCATTTTCAGGTGAGAATGCTCTTCCCCGA TTCGACCAAACCGCATACTCTACCATCGAAACGCAGGCTACTGCACTGGG AAAAGACATTGATGATTTCACCTACCTCAGACTGGGACCGAAGCTCTTGG ACCAGTCGAATTTTGGTACCTTTGAAGCTTTCGTGTCGAAAATGAAGTCT CTCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74290:766..1071-

>mRNA_M-pyrifera_M_contig74290.17594.1 ID=mRNA_M-pyrifera_M_contig74290.17594.1|Name=mRNA_M-pyrifera_M_contig74290.17594.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig74290:766..1071- (Macrocystis pyrifera P11B4 male)
ATGCAGGACGATGAGCAGCCTGCTTCTTGTGATTGTGGTCCTTATGAACT
TGTGAGACAGGTGAAGCAAGCGTCGATTGACGCCAATACCCCATTTTCAG
GTGAGAATGCTCTTCCCCGATTCGACCAAACCGCATACTCTACCATCGAA
ACGCAGGCTACTGCACTGGGAAAAGACATTGATGATTTCACCTACCTCAG
ACTGGGACCGAAGCTCTTGGACCAGTCGAATTTTGGTACCTTTGAAGCTT
TCGTGTCGAAAATGAAGTCTCTCTAAATGCAGGACGATGAGCAGCCTGCT
TCTTGTGATTGTGGTCCTTATGAACTTGTGAGACAGGTGAAGCAAGCGTC
GATTGACGCCAATACCCCATTTTCAGGTGAGAATGCTCTTCCCCGATTCG
ACCAAACCGCATACTCTACCATCGAAACGCAGGCTACTGCACTGGGAAAA
GACATTGATGATTTCACCTACCTCAGACTGGGACCGAAGCTCTTGGACCA
GTCGAATTTTGGTACCTTTGAAGCTTTCGTGTCGAAAATGAAGTCTCTCT
AA
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