mRNA_M-pyrifera_M_contig74290.17593.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74290.17593.1
Unique NamemRNA_M-pyrifera_M_contig74290.17593.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74290.17593.1 vs. uniprot
Match: UPI001F110997 (cysteine protease ATG4C-like n=2 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001F110997)

HSP 1 Score: 62.8 bits (151), Expect = 3.980e-9
Identity = 36/108 (33.33%), Postives = 50/108 (46.30%), Query Frame = 1
Query:   16 WCTYRTQMAPLPTLPRSSSSPLTSDTGWGCTLRSVQSLLGTALRRHMLGTHASTVTVLGGGRTAAVDSTIARLLTDIPSSSTSPFGLHALCAAAPSIVGKEAGEWFTP 339
            W TYR    PL        +P+T+D GWGC +RS Q ++  A   H  G +         G+   +   I +   DIP  STSPF +H +      + GK  G+WF P
Sbjct:  170 WLTYRRDFPPL------LQTPITTDNGWGCMIRSGQMIMAQAFLTHFHGRNWR-----WEGQDDLIHRMIIKWFADIPDRSTSPFSIHEIIRQGQQLFGKNPGDWFGP 266          
BLAST of mRNA_M-pyrifera_M_contig74290.17593.1 vs. uniprot
Match: A0A6P6XZD4_DERPT (Cysteine protease n=1 Tax=Dermatophagoides pteronyssinus TaxID=6956 RepID=A0A6P6XZD4_DERPT)

HSP 1 Score: 61.6 bits (148), Expect = 1.010e-8
Identity = 35/108 (32.41%), Postives = 50/108 (46.30%), Query Frame = 1
Query:   16 WCTYRTQMAPLPTLPRSSSSPLTSDTGWGCTLRSVQSLLGTALRRHMLGTHASTVTVLGGGRTAAVDSTIARLLTDIPSSSTSPFGLHALCAAAPSIVGKEAGEWFTP 339
            W TYR    PL        +P+T+D GWGC +RS Q ++  A   H  G +         G+   +   I +   D+P  STSPF +H +      + GK  G+WF P
Sbjct:  162 WLTYRRDFPPL------LQTPITTDNGWGCMIRSGQMIMAQAFLTHFHGRNWR-----WEGQDDLIHRMIIKWFADVPDRSTSPFSIHEIIRQGQLLFGKNPGDWFGP 258          
BLAST of mRNA_M-pyrifera_M_contig74290.17593.1 vs. uniprot
Match: A0A061R1M7_9CHLO (Cysteine protease n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R1M7_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 1.340e-8
Identity = 45/111 (40.54%), Postives = 53/111 (47.75%), Query Frame = 1
Query:    7 GMFWCTYRTQMAPLPTLPRSSSSPLTSDTGWGCTLRSVQSLLGTALRRHMLGTHASTVTVLGGGRTAAVDSTIARLLTDIPSSSTSPFGLHALCAAAPSIVGKEAGEWFTP 339
             + W TYR   APL       +  LTSD GWGCTLRS Q +L  ALRR   G         GG  TA     + RL  D P+    PF +H +CAA  +  G   GEW  P
Sbjct:  110 SLIWVTYRKDFAPL------GAVGLTSDAGWGCTLRSGQMMLAEALRRESGG--GPRERSAGGPDTAHA---VTRLFWDEPTKEA-PFSIHNICAAG-AAHGVAVGEWLGP 207          
BLAST of mRNA_M-pyrifera_M_contig74290.17593.1 vs. uniprot
Match: A0A7R9Q396_9ACAR (Cysteine protease n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9Q396_9ACAR)

HSP 1 Score: 60.5 bits (145), Expect = 2.200e-8
Identity = 43/112 (38.39%), Postives = 55/112 (49.11%), Query Frame = 1
Query:   16 WCTYRTQMAPLPTLPRSSSSPLTSDTGWGCTLRSVQSLLGTALRRHMLGTHASTVTVLGGGRTAAVDSTIARLLT----DIPSSSTSPFGLHALCAAAPSIVGKEAGEWFTP 339
            W TYR Q       P+  +S LTSDTGWGC LRS Q +L   L  H LG H         G  +  +  I R++     D P+ S SPF +H L      + GK AG+W+ P
Sbjct:  136 WLTYRRQF------PKLDNSSLTSDTGWGCMLRSGQMVLAQGLLTHYLGRHWR-----WKGSQSDKEDMIHRMIVKWFADDPNPSCSPFSVHQLVRFGEQM-GKRAGDWYGP 235          
BLAST of mRNA_M-pyrifera_M_contig74290.17593.1 vs. uniprot
Match: A0A4P9Y024_9FUNG (Cysteine protease n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y024_9FUNG)

HSP 1 Score: 60.5 bits (145), Expect = 2.270e-8
Identity = 39/108 (36.11%), Postives = 52/108 (48.15%), Query Frame = 1
Query:   19 CTYRTQMAPLPTLPRSSSSPLTSDTGWGCTLRSVQSLLGTALRRHMLGTHASTVTVLGGGRTAAVDSTI-ARLLTDIPSSSTSPFGLHALCAAAPSIVGKEAGEWFTP 339
            CTYRTQ  PL       +  LTSD GWGC +R+ QSLL  +L    LG        +GG +    +  +  R+L+    +  +PF LHA+        GK  GEW  P
Sbjct:   41 CTYRTQFPPL------GAQELTSDVGWGCMMRTGQSLLAQSLLLRHLGRDWRVGKSMGGAQKKEEEEEVHRRILSWFSDTPDAPFSLHAIAQQGEDAHGKSIGEWHGP 142          
BLAST of mRNA_M-pyrifera_M_contig74290.17593.1 vs. uniprot
Match: A0A4Q0A0Y5_9FUNG (Cysteine protease (Fragment) n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4Q0A0Y5_9FUNG)

HSP 1 Score: 60.1 bits (144), Expect = 2.480e-8
Identity = 42/108 (38.89%), Postives = 53/108 (49.07%), Query Frame = 1
Query:   16 WCTYRTQMAPLPTLPRSSSSPLTSDTGWGCTLRSVQSLLGTALRRHMLGTHASTVTVLGGGRTAAVDSTIARLLTDIPSSSTSPFGLHALCAAAPSIVGKEAGEWFTP 339
            WCTYR+Q   LP      +S LT+D GWGC LRS QSL+  A   ++LG            RT   D +I +L  D+P  S SP  +H L A   +      G WF P
Sbjct:   18 WCTYRSQFPALP------NSTLTTDAGWGCMLRSAQSLVAQAYVVYLLGRD---------WRTTDEDQSILKLFVDLPGPS-SPLSIHNL-AQKGAEFDNAVGNWFGP 108          
BLAST of mRNA_M-pyrifera_M_contig74290.17593.1 vs. uniprot
Match: A0A3N2PTU6_9PEZI (Cysteine protease n=1 Tax=Sodiomyces alkalinus F11 TaxID=1314773 RepID=A0A3N2PTU6_9PEZI)

HSP 1 Score: 60.1 bits (144), Expect = 3.440e-8
Identity = 42/126 (33.33%), Postives = 53/126 (42.06%), Query Frame = 1
Query:   13 FWCTYRTQMAPLP--TLPRSSS---------------SPLTSDTGWGCTLRSVQSLLGTALRRHMLGTHASTVTVLGGGRTAAVDSTIARLLTDIPSSSTSPFGLHALCAAAPSIVGKEAGEWFTP 339
            FW TYR    P+P  T PR++S               S  +SDTGWGC +RS QSLL  A+  H LG            R      T   LL        +P+ +H       ++ GK  GEWF P
Sbjct:  123 FWMTYRCDFGPIPKSTHPRAASALSLPMRIKSHLTDQSGFSSDTGWGCMIRSGQSLLANAMALHTLGRE---------WRRGTKPDTERNLLAKFADDPRAPYSIHQFVKHGAAMCGKYPGEWFGP 239          
BLAST of mRNA_M-pyrifera_M_contig74290.17593.1 vs. uniprot
Match: UPI00106D036F (cysteine protease ATG4D-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D036F)

HSP 1 Score: 60.1 bits (144), Expect = 3.490e-8
Identity = 41/112 (36.61%), Postives = 52/112 (46.43%), Query Frame = 1
Query:    4 SGMFWCTYRTQMAPLPTLPRSSSSPLTSDTGWGCTLRSVQSLLGTALRRHMLGTHASTVTVLGGGRTAAVDSTIARLLTDIPSSSTSPFGLHALCAAAPSIVGKEAGEWFTP 339
            S + W TYR         P+   S  T+DTGWGC +RS Q +L T L  ++LG    T               I R   D P+   SPF LH L   + S  GK+AG+WF P
Sbjct:  122 SSLMWFTYRKDF------PQVGDSVYTTDTGWGCMIRSAQMMLATGLSYYLLGRDFRTSGRCHSRAQRFFYKAILRFFNDSPAD-LSPFSLHKLVKLSESF-GKQAGDWFGP 225          
BLAST of mRNA_M-pyrifera_M_contig74290.17593.1 vs. uniprot
Match: A0A7R9M417_9ACAR (Cysteine protease n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9M417_9ACAR)

HSP 1 Score: 58.9 bits (141), Expect = 9.140e-8
Identity = 42/112 (37.50%), Postives = 55/112 (49.11%), Query Frame = 1
Query:   16 WCTYRTQMAPLPTLPRSSSSPLTSDTGWGCTLRSVQSLLGTALRRHMLGTHASTVTVLGGGRTAAVDSTIARLLT----DIPSSSTSPFGLHALCAAAPSIVGKEAGEWFTP 339
            W TYR Q       P+  +S LT+DTGWGC LRS Q +L   L  H LG H         G  +  +  I R++     D P+ S SPF +H L      + GK AG+W+ P
Sbjct:  441 WFTYRRQF------PKLDNSSLTTDTGWGCMLRSGQMVLAQGLLTHYLGRHWR-----WKGSQSDKEDMIHRMIVKWFADDPNPSCSPFSVHQLVRFGEQM-GKRAGDWYGP 540          
BLAST of mRNA_M-pyrifera_M_contig74290.17593.1 vs. uniprot
Match: A0A5J4XPA4_9CHLO (Cysteine protease n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XPA4_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 1.150e-7
Identity = 48/114 (42.11%), Postives = 57/114 (50.00%), Query Frame = 1
Query:   16 WCTYRTQMAPLPTLPRSSSSPLTSDTGWGCTLRSVQSLLGTALRRHMLGTHASTVTVLGGGRTAA---VDSTIARLLT---DIPSSSTSPFGLHALCAAAPSIVGKEAGEWFTP 339
            W TYR   APL T      S LT+D GWGCTLRS Q LL   L++H +G          G R  A   +   ++RLL    D PS    PF +H LCAA     G +AGEW  P
Sbjct:   95 WMTYRRGFAPLGT------SELTTDAGWGCTLRSGQMLLAQGLQQHCVGR---------GWRRYADTPLPEALSRLLRWFWDEPSPQY-PFSIHNLCAAG-RPHGVKAGEWLGP 191          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74290.17593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F1109973.980e-933.33cysteine protease ATG4C-like n=2 Tax=Dermatophagoi... [more]
A0A6P6XZD4_DERPT1.010e-832.41Cysteine protease n=1 Tax=Dermatophagoides pterony... [more]
A0A061R1M7_9CHLO1.340e-840.54Cysteine protease n=2 Tax=Tetraselmis sp. GSL018 T... [more]
A0A7R9Q396_9ACAR2.200e-838.39Cysteine protease n=1 Tax=Medioppia subpectinata T... [more]
A0A4P9Y024_9FUNG2.270e-836.11Cysteine protease n=1 Tax=Piptocephalis cylindrosp... [more]
A0A4Q0A0Y5_9FUNG2.480e-838.89Cysteine protease (Fragment) n=1 Tax=Dimargaris cr... [more]
A0A3N2PTU6_9PEZI3.440e-833.33Cysteine protease n=1 Tax=Sodiomyces alkalinus F11... [more]
UPI00106D036F3.490e-836.61cysteine protease ATG4D-like n=1 Tax=Dendronephthy... [more]
A0A7R9M417_9ACAR9.140e-837.50Cysteine protease n=1 Tax=Oppiella nova TaxID=3346... [more]
A0A5J4XPA4_9CHLO1.150e-742.11Cysteine protease n=1 Tax=Trebouxia sp. A1-2 TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74290contigM-pyrifera_M_contig74290:2..343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue2e-10
Seed eggNOG ortholog2850.Phatr50253
Preferred nameATG4C
KEGG koko:K08342
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categorymitochondrion
GOsGO:0000045,GO:0000422,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006497,GO:0006501,GO:0006508,GO:0006605,GO:0006612,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0006996,GO:0007005,GO:0007033,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009058,GO:0009059,GO:0009987,GO:0015031,GO:0015833,GO:0016043,GO:0016236,GO:0016787,GO:0018410,GO:0019538,GO:0022411,GO:0022607,GO:0033036,GO:0034613,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042886,GO:0043170,GO:0043412,GO:0043687,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044804,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051697,GO:0061726,GO:0061919,GO:0070011,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072657,GO:0090150,GO:0140096,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:1905037
EggNOG free text desc.Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy
EggNOG OGs2XG5E@2836,KOG2674@1,KOG2674@2759
COG Functional cat.UZ
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03029,ko04131
Exons1
Model size342
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816641.3727694-CDS-M-pyrifera_M_contig74290:1..3341622816641.3727694-CDS-M-pyrifera_M_contig74290:1..334Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74290 2..334 -
1692278093.756651-CDS-M-pyrifera_M_contig74290:1..3341692278093.756651-CDS-M-pyrifera_M_contig74290:1..334Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74290 2..334 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816641.382812-UTR-M-pyrifera_M_contig74290:334..3431622816641.382812-UTR-M-pyrifera_M_contig74290:334..343Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74290 335..343 -
1692278093.7704394-UTR-M-pyrifera_M_contig74290:334..3431692278093.7704394-UTR-M-pyrifera_M_contig74290:334..343Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74290 335..343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74290.17593.1prot_M-pyrifera_M_contig74290.17593.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74290 2..334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74290.17593.1

>prot_M-pyrifera_M_contig74290.17593.1 ID=prot_M-pyrifera_M_contig74290.17593.1|Name=mRNA_M-pyrifera_M_contig74290.17593.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MFWCTYRTQMAPLPTLPRSSSSPLTSDTGWGCTLRSVQSLLGTALRRHML
GTHASTVTVLGGGRTAAVDSTIARLLTDIPSSSTSPFGLHALCAAAPSIV
GKEAGEWFTPG
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mRNA from alignment at M-pyrifera_M_contig74290:2..343-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74290.17593.1 ID=mRNA_M-pyrifera_M_contig74290.17593.1|Name=mRNA_M-pyrifera_M_contig74290.17593.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig74290:2..343- (Macrocystis pyrifera P11B4 male)
TTATCAGGGATGTTTTGGTGCACCTATCGCACACAGATGGCACCTCTACC AACATTACCTCGCTCCTCATCATCTCCTCTCACAAGTGACACGGGGTGGG GCTGCACGTTGCGTTCTGTACAATCACTTCTTGGAACAGCACTTCGTAGG CATATGCTTGGCACGCACGCTAGCACCGTAACAGTATTAGGTGGCGGGAG GACAGCAGCAGTGGACAGTACCATCGCAAGGCTTCTCACTGACATCCCTT CTTCCTCCACATCTCCATTTGGGCTGCACGCTTTATGTGCAGCTGCCCCT TCCATTGTTGGGAAGGAAGCAGGAGAATGGTTCACACCAGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74290:2..343-

>mRNA_M-pyrifera_M_contig74290.17593.1 ID=mRNA_M-pyrifera_M_contig74290.17593.1|Name=mRNA_M-pyrifera_M_contig74290.17593.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig74290:2..343- (Macrocystis pyrifera P11B4 male)
ATGTTTTGGTGCACCTATCGCACACAGATGGCACCTCTACCAACATTACC
TCGCTCCTCATCATCTCCTCTCACAAGTGACACGGGGTGGGGCTGCACGT
TGCGTTCTGTACAATCACTTCTTGGAACAGCACTTCGTAGGCATATGCTT
GGCACGCACGCTAGCACCGTAACAGTATTAGGTGGCGGGAGGACAGCAGC
AGTGGACAGTACCATCGCAAGGCTTCTCACTGACATCCCTTCTTCCTCCA
CATCTCCATTTGGGCTGCACGCTTTATGTGCAGCTGCCCCTTCCATTGTT
GGGAAGGAAGCAGGAGAATGGTTCACACCAGGAATGTTTTGGTGCACCTA
TCGCACACAGATGGCACCTCTACCAACATTACCTCGCTCCTCATCATCTC
CTCTCACAAGTGACACGGGGTGGGGCTGCACGTTGCGTTCTGTACAATCA
CTTCTTGGAACAGCACTTCGTAGGCATATGCTTGGCACGCACGCTAGCAC
CGTAACAGTATTAGGTGGCGGGAGGACAGCAGCAGTGGACAGTACCATCG
CAAGGCTTCTCACTGACATCCCTTCTTCCTCCACATCTCCATTTGGGCTG
CACGCTTTATGTGCAGCTGCCCCTTCCATTGTTGGGAAGGAAGCAGGAGA
ATGGTTCACACCAGGA
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