mRNA_M-pyrifera_M_contig7427.17589.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7427.17589.1
Unique NamemRNA_M-pyrifera_M_contig7427.17589.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7427.17589.1 vs. uniprot
Match: D8LQU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQU6_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 4.100e-22
Identity = 59/109 (54.13%), Postives = 70/109 (64.22%), Query Frame = 1 
Query:  103 WKTAWESAKRPKTTSVHSAAATPARVESVLGLTAFHRAAAPSGGVFCLAAQAANLAGLQVAARVWGRGWTSQVFVPRMTAIAARGGNLEILQWAWSEGCHLSAHLCTHA 429
            W++ WE+  RPK TSV  A AT ARVE+++G  +FH A    GGVFCLAA A NL G+Q AAR  G GW S   V  MTA AA  G+L IL+WA S GC LS H+   A
Sbjct:   75 WRSTWEAEGRPKKTSVSLATATNARVETIMGQPSFHAATGHLGGVFCLAASAGNLGGIQTAARESGDGWKSLGPVVMMTAEAASAGHLHILEWAKSSGCRLSVHVLRSA 183
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BLAST of mRNA_M-pyrifera_M_contig7427.17589.1 vs. uniprot
Match: A0A6H5JT58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT58_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.340e-12
Identity = 43/80 (53.75%), Postives = 49/80 (61.25%), Query Frame = 1 
Query:  190 LGLTAFHRAAAPSGGVFCLAAQAANLAGLQVAARVWGRGWTSQVFVPRMTAIAARGGNLEILQWAWSEGCHLSAHLCTHA 429
            +G  +FH A    GGVFCLAA A NL G+Q AAR  G GW S   V  MTA AA  G+L IL+WA S GC LS H+   A
Sbjct:    1 MGQPSFHVATRHLGGVFCLAASAGNLGGIQTAARESGDGWESLGSVVMMTAEAASAGHLHILEWAKSAGCRLSVHILRSA 80
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7427.17589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQU6_ECTSI4.100e-2254.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JT58_9PHAE3.340e-1253.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7427contigM-pyrifera_M_contig7427:4972..6108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1053
Cds size1053
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816641.201014-CDS-M-pyrifera_M_contig7427:4971..55831622816641.201014-CDS-M-pyrifera_M_contig7427:4971..5583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7427 4972..5583 +
1692278093.6657665-CDS-M-pyrifera_M_contig7427:4971..55831692278093.6657665-CDS-M-pyrifera_M_contig7427:4971..5583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7427 4972..5583 +
1622816641.2188473-CDS-M-pyrifera_M_contig7427:5667..61081622816641.2188473-CDS-M-pyrifera_M_contig7427:5667..6108Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7427 5668..6108 +
1692278093.6855888-CDS-M-pyrifera_M_contig7427:5667..61081692278093.6855888-CDS-M-pyrifera_M_contig7427:5667..6108Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7427 5668..6108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7427.17589.1prot_M-pyrifera_M_contig7427.17589.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7427 4972..6108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7427.17589.1

>prot_M-pyrifera_M_contig7427.17589.1 ID=prot_M-pyrifera_M_contig7427.17589.1|Name=mRNA_M-pyrifera_M_contig7427.17589.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=351bp
QQQHPLQSQTDTISDVLSYSPTSDYLFLAGVNRGWKTAWESAKRPKTTSV
HSAAATPARVESVLGLTAFHRAAAPSGGVFCLAAQAANLAGLQVAARVWG
RGWTSQVFVPRMTAIAARGGNLEILQWAWSEGCHLSAHLCTHAAEGGRLD
VLRWARERGCNWNKDTCRLAALGGHLGVLKWAREHGCPLNEETCRFAAEG
GHLGVLRWARERDCPWDARTCSSAAEGGHLEVLKWARTEGCPWDNETCNF
AALEGHLAMLQWAKGKGCPWDERTCSYAALGGHLEVLKWAIENGCPWDID
TSECAARGGHLEVLRWSRANGCPWNVKKCVAIAKNRRYVELAEWMLQGSE
*
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mRNA from alignment at M-pyrifera_M_contig7427:4972..6108+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7427.17589.1 ID=mRNA_M-pyrifera_M_contig7427.17589.1|Name=mRNA_M-pyrifera_M_contig7427.17589.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at M-pyrifera_M_contig7427:4972..6108+ (Macrocystis pyrifera P11B4 male)
CAACAGCAGCACCCCCTCCAGAGTCAGACGGACACAATTTCGGACGTCCT
CTCCTACAGCCCAACGAGCGACTACCTCTTCCTCGCCGGCGTCAACAGGG
GCTGGAAAACCGCCTGGGAGTCGGCCAAACGCCCAAAAACCACCAGCGTC
CACTCGGCAGCCGCTACCCCCGCTCGGGTCGAGAGCGTTCTCGGCCTAAC
CGCCTTCCACCGAGCCGCCGCGCCATCTGGCGGCGTCTTCTGCCTGGCCG
CCCAAGCCGCGAACCTTGCAGGCCTGCAGGTGGCCGCGAGAGTATGGGGG
CGTGGCTGGACTTCCCAGGTTTTCGTACCGCGCATGACGGCCATAGCGGC
GAGAGGAGGCAACCTTGAGATTCTCCAGTGGGCGTGGTCGGAGGGGTGCC
ATCTCAGCGCGCACCTCTGCACGCACGCCGCGGAGGGCGGGCGGCTTGAC
GTCCTCCGGTGGGCCAGAGAGCGCGGGTGCAATTGGAACAAGGATACCTG
CAGGCTGGCCGCTCTGGGGGGACACCTGGGTGTGTTGAAGTGGGCGAGGG
AGCACGGTTGCCCGCTGAACGAAGAGACTTGCAGGTTTGCCGCGGAGGGG
GGGCATCTCGGCGTCTTGCGGTGGGCCAGAGAGGAGCAAGAATGTCGGTG
GAACGCGGAGACGTGCATGCTCGCCGCGGCGGGCGGGCACATGGAGGTCC
TGCGGTGGGCGAGGGAGAGAGACTGCCCATGGGATGCGCGCACTTGTAGC
TCCGCCGCGGAGGGGGGCCACTTGGAAGTGCTAAAGTGGGCGAGAACGGA
AGGGTGCCCGTGGGACAACGAGACCTGCAACTTCGCCGCGCTGGAGGGGC
ACCTGGCCATGCTGCAGTGGGCGAAAGGGAAGGGCTGCCCGTGGGACGAA
CGCACGTGCAGTTACGCCGCGCTGGGCGGGCACTTGGAGGTCTTGAAGTG
GGCGATTGAGAACGGTTGCCCGTGGGATATCGATACGAGCGAGTGCGCTG
CTCGGGGGGGGCACTTGGAAGTTTTGCGCTGGTCGAGGGCGAATGGGTGC
CCGTGGAATGTCAAGAAATGCGTCGCGATCGCGAAGAACCGCCGGTACGT
GGAGCTTGCAGAGTGGATGCTGCAAGGGTCGGAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7427:4972..6108+

>mRNA_M-pyrifera_M_contig7427.17589.1 ID=mRNA_M-pyrifera_M_contig7427.17589.1|Name=mRNA_M-pyrifera_M_contig7427.17589.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2106bp|location=Sequence derived from alignment at M-pyrifera_M_contig7427:4972..6108+ (Macrocystis pyrifera P11B4 male)
CAACAGCAGCACCCCCTCCAGAGTCAGACGGACACAATTTCGGACGTCCT
CTCCTACAGCCCAACGAGCGACTACCTCTTCCTCGCCGGCGTCAACAGGG
GCTGGAAAACCGCCTGGGAGTCGGCCAAACGCCCAAAAACCACCAGCGTC
CACTCGGCAGCCGCTACCCCCGCTCGGGTCGAGAGCGTTCTCGGCCTAAC
CGCCTTCCACCGAGCCGCCGCGCCATCTGGCGGCGTCTTCTGCCTGGCCG
CCCAAGCCGCGAACCTTGCAGGCCTGCAGGTGGCCGCGAGAGTATGGGGG
CGTGGCTGGACTTCCCAGGTTTTCGTACCGCGCATGACGGCCATAGCGGC
GAGAGGAGGCAACCTTGAGATTCTCCAGTGGGCGTGGTCGGAGGGGTGCC
ATCTCAGCGCGCACCTCTGCACGCACGCCGCGGAGGGCGGGCGGCTTGAC
GTCCTCCGGTGGGCCAGAGAGCGCGGGTGCAATTGGAACAAGGATACCTG
CAGGCTGGCCGCTCTGGGGGGACACCTGGGTGTGTTGAAGTGGGCGAGGG
AGCACGGTTGCCCGCTGAACGAAGAGACTTGCAGGTTTGCCGCGGAGGGG
GGGCATCTCGGCCAACAGCAGCACCCCCTCCAGAGTCAGACGGACACAAT
TTCGGACGTCCTCTCCTACAGCCCAACGAGCGACTACCTCTTCCTCGCCG
GCGTCAACAGGGGCTGGAAAACCGCCTGGGAGTCGGCCAAACGCCCAAAA
ACCACCAGCGTCCACTCGGCAGCCGCTACCCCCGCTCGGGTCGAGAGCGT
TCTCGGCCTAACCGCCTTCCACCGAGCCGCCGCGCCATCTGGCGGCGTCT
TCTGCCTGGCCGCCCAAGCCGCGAACCTTGCAGGCCTGCAGGTGGCCGCG
AGAGTATGGGGGCGTGGCTGGACTTCCCAGGTTTTCGTACCGCGCATGAC
GGCCATAGCGGCGAGAGGAGGCAACCTTGAGATTCTCCAGTGGGCGTGGT
CGGAGGGGTGCCATCTCAGCGCGCACCTCTGCACGCACGCCGCGGAGGGC
GGGCGGCTTGACGTCCTCCGGTGGGCCAGAGAGCGCGGGTGCAATTGGAA
CAAGGATACCTGCAGGCTGGCCGCTCTGGGGGGACACCTGGGTGTGTTGA
AGTGGGCGAGGGAGCACGGTTGCCCGCTGAACGAAGAGACTTGCAGGTTT
GCCGCGGAGGGGGGGCATCTCGGCGTCCTGCGGTGGGCGAGGGAGAGAGA
CTGCCCATGGGATGCGCGCACTTGTAGCTCCGCCGCGGAGGGGGGCCACT
TGGAAGTGCTAAAGTGGGCGAGAACGGAAGGGTGCCCGTGGGACAACGAG
ACCTGCAACTTCGCCGCGCTGGAGGGGCACCTGGCCATGCTGCAGTGGGC
GAAAGGGAAGGGCTGCCCGTGGGACGAACGCACGTGCAGTTACGCCGCGC
TGGGCGGGCACTTGGAGGTCTTGAAGTGGGCGATTGAGAACGGTTGCCCG
TGGGATATCGATACGAGCGAGTGCGCTGCTCGGGGGGGGCACTTGGAAGT
TTTGCGCTGGTCGAGGGCGAATGGGTGCCCGTGGAATGTCAAGAAATGCG
TCGCGATCGCGAAGAACCGCCGGTACGTGGAGCTTGCAGAGTGGATGCTG
CAAGGGTCGGAGTGAGTCCTGCGGTGGGCGAGGGAGAGAGACTGCCCATG
GGATGCGCGCACTTGTAGCTCCGCCGCGGAGGGGGGCCACTTGGAAGTGC
TAAAGTGGGCGAGAACGGAAGGGTGCCCGTGGGACAACGAGACCTGCAAC
TTCGCCGCGCTGGAGGGGCACCTGGCCATGCTGCAGTGGGCGAAAGGGAA
GGGCTGCCCGTGGGACGAACGCACGTGCAGTTACGCCGCGCTGGGCGGGC
ACTTGGAGGTCTTGAAGTGGGCGATTGAGAACGGTTGCCCGTGGGATATC
GATACGAGCGAGTGCGCTGCTCGGGGGGGGCACTTGGAAGTTTTGCGCTG
GTCGAGGGCGAATGGGTGCCCGTGGAATGTCAAGAAATGCGTCGCGATCG
CGAAGAACCGCCGGTACGTGGAGCTTGCAGAGTGGATGCTGCAAGGGTCG
GAGTGA
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