mRNA_M-pyrifera_M_contig74253.17588.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74253.17588.1
Unique NamemRNA_M-pyrifera_M_contig74253.17588.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74253.17588.1 vs. uniprot
Match: A0A5A8DS32_CAFRO (Cytochrome b-c1 complex subunit 6 n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DS32_CAFRO)

HSP 1 Score: 88.6 bits (218), Expect = 8.410e-22
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    1 MQDEDPVCVKPIAEKECHSSCGKQDELYKQCVERIAKKGSGNCEAWKMDYWHCIDKCAAPKVFKALK 201
            M D + V  KP  EKECHSSC  Q   Y+ CV+RI  KGSG+CE W  DYW C+DKC AP++F  LK
Sbjct:    1 MADAEVVDQKPRIEKECHSSCTGQWGKYEACVKRITAKGSGSCEPWAFDYWTCVDKCTAPRLFAVLK 67          
BLAST of mRNA_M-pyrifera_M_contig74253.17588.1 vs. uniprot
Match: A0A2R5GQT1_9STRA (Cytochrome b-c1 complex subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQT1_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.080e-15
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1
Query:   10 EDPVCVKPIAEKECHSSCGKQDELYKQCVERIAKKGSGNCEAWKMDYWHCIDKCAAPKVFKALK 201
            +DPV  +P  E+ C   C K  + Y+ C ER+  KG G+C     D++HCID CAAPKVFK +K
Sbjct:    3 DDPVDPRPEIEEACKPGCQKYWKEYEACAERVQAKGEGHCSGQYFDFYHCIDACAAPKVFKTVK 66          
BLAST of mRNA_M-pyrifera_M_contig74253.17588.1 vs. uniprot
Match: A0A6P6VTG5_COFAR (Cytochrome b-c1 complex subunit 6 n=1 Tax=Coffea arabica TaxID=13443 RepID=A0A6P6VTG5_COFAR)

HSP 1 Score: 70.1 bits (170), Expect = 1.840e-14
Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 1
Query:    1 MQDEDPVCVKPIAEKECHSSCGKQDELYKQCVERIAKKGSGN--CEAWKMDYWHCIDKCAAPKVFKALK 201
            M DE+PV  K   E  C + C ++   Y+ CV R+ K  +GN  C     DYWHC+DKC APK+F  LK
Sbjct:    1 MADEEPVDPKKHMEDVCKAKCTREWRAYEDCVFRVRKDDTGNKHCTGQYFDYWHCVDKCVAPKLFTKLK 69          
BLAST of mRNA_M-pyrifera_M_contig74253.17588.1 vs. uniprot
Match: A0A059AUD8_EUCGR (Cytochrome b-c1 complex subunit 6 n=3 Tax=Myrtoideae TaxID=1699513 RepID=A0A059AUD8_EUCGR)

HSP 1 Score: 68.6 bits (166), Expect = 7.470e-14
Identity = 34/69 (49.28%), Postives = 40/69 (57.97%), Query Frame = 1
Query:    1 MQDEDPVCVKPIAEKECHSSCGKQDELYKQCVERIAKKGSGN--CEAWKMDYWHCIDKCAAPKVFKALK 201
            M DE+PV  K   E+ C   C K    YK CV+RI    SG+  C     DYWHCIDKC APK+F+ LK
Sbjct:    1 MADEEPVDQKKYLEELCKPKCVKPLLEYKACVKRIEGDESGHKHCTGQYFDYWHCIDKCVAPKLFEKLK 69          
BLAST of mRNA_M-pyrifera_M_contig74253.17588.1 vs. uniprot
Match: UPI001C26C866 (cytochrome b-c1 complex subunit 6-1, mitochondrial-like n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C26C866)

HSP 1 Score: 68.2 bits (165), Expect = 1.590e-13
Identity = 32/66 (48.48%), Postives = 38/66 (57.58%), Query Frame = 1
Query:   10 EDPVCVKPIAEKECHSSCGKQDELYKQCVERIAKKGSG--NCEAWKMDYWHCIDKCAAPKVFKALK 201
            ED V  K   E+ C S C K    YKQCVER+    SG  +C     DYW C+DKC APK+F+ LK
Sbjct:   20 EDAVDQKKALEESCKSKCNKPYVEYKQCVERVDSDDSGQKHCTGQYFDYWSCVDKCVAPKLFQELK 85          
BLAST of mRNA_M-pyrifera_M_contig74253.17588.1 vs. uniprot
Match: A0A7S3QPS8_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QPS8_DUNTE)

HSP 1 Score: 67.8 bits (164), Expect = 4.030e-13
Identity = 30/60 (50.00%), Postives = 36/60 (60.00%), Query Frame = 1
Query:   28 KPIAEKECHSSCGKQDELYKQCVERIA--KKGSGNCEAWKMDYWHCIDKCAAPKVFKALK 201
            KP  E+EC   C KQ + YK CVERI     G  +C     D+WHC+D CAAPK+F  LK
Sbjct:   49 KPQIEEECKPHCVKQWQEYKACVERIQGDTTGQAHCSGQYFDFWHCVDHCAAPKIFSRLK 108          
BLAST of mRNA_M-pyrifera_M_contig74253.17588.1 vs. uniprot
Match: UPI000E6F4D6A (cytochrome b-c1 complex subunit 6-like n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F4D6A)

HSP 1 Score: 66.6 bits (161), Expect = 4.100e-13
Identity = 29/67 (43.28%), Postives = 36/67 (53.73%), Query Frame = 1
Query:    1 MQDEDPVCVKPIAEKECHSSCGKQDELYKQCVERIAKKGSGNCEAWKMDYWHCIDKCAAPKVFKALK 201
            M DEDP+  K   E+ C   C K    YK C +RI    + +C     DYW C+DKC APK+F  LK
Sbjct:    1 MADEDPINPKEYLEESCKPKCVKALLEYKNCTKRIEGDDTKHCTGQYFDYWSCVDKCVAPKLFSKLK 67          
BLAST of mRNA_M-pyrifera_M_contig74253.17588.1 vs. uniprot
Match: A0A6J1AHX5_9ROSI (Cytochrome b-c1 complex subunit 6 n=2 Tax=Byttnerioideae TaxID=214909 RepID=A0A6J1AHX5_9ROSI)

HSP 1 Score: 66.6 bits (161), Expect = 4.310e-13
Identity = 32/69 (46.38%), Postives = 39/69 (56.52%), Query Frame = 1
Query:    1 MQDEDPVCVKPIAEKECHSSCGKQDELYKQCVERIAKKGSGN--CEAWKMDYWHCIDKCAAPKVFKALK 201
            M DEDPV  K   E+ C   C K    Y++CV+RI    SG+  C     DYW C+DKC APK+F  LK
Sbjct:    1 MADEDPVDQKKYLEEACKPKCVKPLLAYQECVKRIQGDESGHKHCTGQYFDYWSCVDKCVAPKLFTELK 69          
BLAST of mRNA_M-pyrifera_M_contig74253.17588.1 vs. uniprot
Match: A0A7S0BIT0_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BIT0_9RHOD)

HSP 1 Score: 67.8 bits (164), Expect = 7.810e-13
Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    4 QDEDPVCVKPIAEKECHSSCGKQDELYKQCVERIAKK--GSGNCEAWKMDYWHCIDKCAAPKVFKALK 201
            +DE+PV +K I E+ C   C K+ + Y+ C +RI     G  +C    +D+W CIDKCAAPK+F +++
Sbjct:   69 EDEEPVDMKEIYEESCKPKCAKELKAYEACQKRIEDDTTGEAHCTGQYLDFWKCIDKCAAPKIFASMR 136          
BLAST of mRNA_M-pyrifera_M_contig74253.17588.1 vs. uniprot
Match: A0A4D8Z6U4_SALSN (UCR_hinge domain-containing protein n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8Z6U4_SALSN)

HSP 1 Score: 69.3 bits (168), Expect = 8.270e-13
Identity = 32/69 (46.38%), Postives = 39/69 (56.52%), Query Frame = 1
Query:    1 MQDEDPVCVKPIAEKECHSSCGKQDELYKQCVERIAKKGSG--NCEAWKMDYWHCIDKCAAPKVFKALK 201
            +  ED V  K   E+ C S C K    YKQCVER+    SG  +C     DYW C+DKC APK+F+ LK
Sbjct:  143 LNSEDAVDQKKALEESCKSKCNKPYVEYKQCVERVDSDDSGQKHCTGQYFDYWSCVDKCVAPKLFQELK 211          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74253.17588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DS32_CAFRO8.410e-2256.72Cytochrome b-c1 complex subunit 6 n=1 Tax=Cafeteri... [more]
A0A2R5GQT1_9STRA2.080e-1546.88Cytochrome b-c1 complex subunit 6 n=1 Tax=Hondaea ... [more]
A0A6P6VTG5_COFAR1.840e-1444.93Cytochrome b-c1 complex subunit 6 n=1 Tax=Coffea a... [more]
A0A059AUD8_EUCGR7.470e-1449.28Cytochrome b-c1 complex subunit 6 n=3 Tax=Myrtoide... [more]
UPI001C26C8661.590e-1348.48cytochrome b-c1 complex subunit 6-1, mitochondrial... [more]
A0A7S3QPS8_DUNTE4.030e-1350.00Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
UPI000E6F4D6A4.100e-1343.28cytochrome b-c1 complex subunit 6-like n=1 Tax=Pap... [more]
A0A6J1AHX5_9ROSI4.310e-1346.38Cytochrome b-c1 complex subunit 6 n=2 Tax=Byttneri... [more]
A0A7S0BIT0_9RHOD7.810e-1341.18Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A4D8Z6U4_SALSN8.270e-1346.38UCR_hinge domain-containing protein n=1 Tax=Salvia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74253contigM-pyrifera_M_contig74253:787..990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score80.5
Seed ortholog evalue3.4e-13
Seed eggNOG ortholog248742.XP_005647640.1
KEGG koko:K00416
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00152
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1
EggNOG OGs37W7N@33090,KOG4763@1,KOG4763@2759
COG Functional cat.C
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons1
Model size204
Cds size204
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816641.154225-CDS-M-pyrifera_M_contig74253:786..9901622816641.154225-CDS-M-pyrifera_M_contig74253:786..990Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74253 787..990 -
1692278093.6490266-CDS-M-pyrifera_M_contig74253:786..9901692278093.6490266-CDS-M-pyrifera_M_contig74253:786..990Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74253 787..990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74253.17588.1prot_M-pyrifera_M_contig74253.17588.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74253 787..990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74253.17588.1

>prot_M-pyrifera_M_contig74253.17588.1 ID=prot_M-pyrifera_M_contig74253.17588.1|Name=mRNA_M-pyrifera_M_contig74253.17588.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
MQDEDPVCVKPIAEKECHSSCGKQDELYKQCVERIAKKGSGNCEAWKMDY
WHCIDKCAAPKVFKALK*
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mRNA from alignment at M-pyrifera_M_contig74253:787..990-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74253.17588.1 ID=mRNA_M-pyrifera_M_contig74253.17588.1|Name=mRNA_M-pyrifera_M_contig74253.17588.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig74253:787..990- (Macrocystis pyrifera P11B4 male)
ATGCAGGATGAAGATCCAGTTTGTGTGAAGCCAATTGCAGAGAAGGAGTG CCATTCGTCTTGTGGGAAGCAAGACGAGCTGTACAAGCAGTGTGTGGAGC GCATCGCGAAGAAAGGGTCTGGCAACTGCGAAGCCTGGAAAATGGACTAC TGGCACTGCATTGACAAGTGCGCAGCCCCAAAGGTCTTCAAGGCGCTCAA GTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74253:787..990-

>mRNA_M-pyrifera_M_contig74253.17588.1 ID=mRNA_M-pyrifera_M_contig74253.17588.1|Name=mRNA_M-pyrifera_M_contig74253.17588.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig74253:787..990- (Macrocystis pyrifera P11B4 male)
ATGCAGGATGAAGATCCAGTTTGTGTGAAGCCAATTGCAGAGAAGGAGTG
CCATTCGTCTTGTGGGAAGCAAGACGAGCTGTACAAGCAGTGTGTGGAGC
GCATCGCGAAGAAAGGGTCTGGCAACTGCGAAGCCTGGAAAATGGACTAC
TGGCACTGCATTGACAAGTGCGCAGCCCCAAAGGTCTTCAAGGCGCTCAA
GTAGATGCAGGATGAAGATCCAGTTTGTGTGAAGCCAATTGCAGAGAAGG
AGTGCCATTCGTCTTGTGGGAAGCAAGACGAGCTGTACAAGCAGTGTGTG
GAGCGCATCGCGAAGAAAGGGTCTGGCAACTGCGAAGCCTGGAAAATGGA
CTACTGGCACTGCATTGACAAGTGCGCAGCCCCAAAGGTCTTCAAGGCGC
TCAAGTAG
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