mRNA_M-pyrifera_M_contig74246.17584.1 (mRNA) Macrocystis pyrifera P11B4 male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig74246.17584.1 vs. uniprot
Match: A0A7Y2NAA6_9ACTN (DNA_pol3_delta domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2NAA6_9ACTN) HSP 1 Score: 311 bits (798), Expect = 5.380e-103 Identity = 163/260 (62.69%), Postives = 199/260 (76.54%), Query Frame = 1 Query: 1 LAMFTRADQVAPLVKWLEAPLETTDLVLVWEKASSSGARMGAIPKSLKAAIKDAGGREVDAAPSGKGRKALVERQLHDAALRLDPAARKRIIDHLGDDAGRVQPIIEALISSFGEGAAIGLADVEPFLGMAADVPPWELTDAIDSGDIALALNKADRMVRGGERHSLQIMATLHSHYQRALALDGLGLRDEKAAADILGMKGSTFPAKKALNLSRKLGHERLREVTLLLADADLDLRGASAMPHDAVIEVLIARLARVSR 780 L +FT+ D VAPLV +L P +TTDLVLVWEK ++S R+GA+PKSLKAA+K A E+DAAP GKGR+ L+ RQ+ +A++RLD +A+ I D LG+D GR ++ L S+FGEGA + +DVEPFLG AADVPPWELTDAIDSGDI AL K RM+ GG RHSLQI+ATLH HYQRALALDG G+ E+ AA +LGMKGSTFPAKKAL LSR L +LREV LLA ADL +RG +A+ DA +EVL+ARLA +SR Sbjct: 77 LGIFTKGDDVAPLVAYLADPTDTTDLVLVWEKGATSQ-RLGALPKSLKAALKSANAEEIDAAPKGKGRRELLNRQMAEASVRLDGSAKALIADRLGEDVGRADAVLAVLTSTFGEGAGLSASDVEPFLGEAADVPPWELTDAIDSGDIGTALEKLHRMMAGGGRHSLQILATLHGHYQRALALDGSGVSSERDAAALLGMKGSTFPAKKALTLSRSLNGAKLREVFGLLATADLGVRGKTAVDADAQMEVLVARLAALSR 335
BLAST of mRNA_M-pyrifera_M_contig74246.17584.1 vs. uniprot
Match: A0A7Y2DQ57_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DQ57_9ACTN) HSP 1 Score: 311 bits (797), Expect = 7.150e-103 Identity = 161/260 (61.92%), Postives = 204/260 (78.46%), Query Frame = 1 Query: 1 LAMFTRADQVAPLVKWLEAPLETTDLVLVWEKASSSGARMGAIPKSLKAAIKDAGGREVDAAPSGKGRKALVERQLHDAALRLDPAARKRIIDHLGDDAGRVQPIIEALISSFGEGAAIGLADVEPFLGMAADVPPWELTDAIDSGDIALALNKADRMVRGGERHSLQIMATLHSHYQRALALDGLGLRDEKAAADILGMKGSTFPAKKALNLSRKLGHERLREVTLLLADADLDLRGASAMPHDAVIEVLIARLARVSR 780 L +FT+ D VAPLV++L+ P +TTDLVLVWE+ ++S R+ A+PK LK A+ AG E+DAAP GKGRKAL+++ L +AA+RLD A+ + D LGDD GR+ +++AL S+FGEGA + DVEPFLG A+DVPPWELTDAID G+IA+AL+K RM+ GGERH+LQI+ATLH HYQRALALDG + E+ AA +LGMKGSTFPAKKALNLSR LG +LREV LLA ADL +RGA+A+ V+EVL+ARLA +SR Sbjct: 75 LGIFTKKDDVAPLVRYLDDPTDTTDLVLVWERGANSP-RLAAVPKPLKDALAAAGATELDAAPRGKGRKALLDQHLAEAAVRLDGGAKAAVADRLGDDVGRLSAVLDALTSTFGEGAGLTAGDVEPFLGEASDVPPWELTDAIDKGNIAVALDKLHRMMGGGERHALQILATLHGHYQRALALDGAAITSERDAAALLGMKGSTFPAKKALNLSRALGPTKLREVFGLLATADLGVRGATAIDTTTVMEVLVARLAALSR 333
BLAST of mRNA_M-pyrifera_M_contig74246.17584.1 vs. uniprot
Match: A0A8F4J945_9ACTN (DNA polymerase III subunit delta n=1 Tax=Aquihabitans sp. G128 TaxID=2849779 RepID=A0A8F4J945_9ACTN) HSP 1 Score: 259 bits (662), Expect = 3.000e-82 Identity = 139/259 (53.67%), Postives = 174/259 (67.18%), Query Frame = 1 Query: 4 AMFTRADQVAPLVKWLEAPLETTDLVLVWEKASSSGARMGAIPKSLKAAIKDAGGREVDAAPSGKGRKALVERQLHDAALRLDPAARKRIIDHLGDDAGRVQPIIEALISSFGEGAAIGLADVEPFLGMAADVPPWELTDAIDSGDIALALNKADRMVRGGERHSLQIMATLHSHYQRALALDGLGLRDEKAAADILGMKGSTFPAKKALNLSRKLGHERLREVTLLLADADLDLRGASAMPHDAVIEVLIARLARVSR 780 A FT+A ++ L+++LE PL TT LV+VWE +S G+ +P +L AI AGG VD P G+ V Q +A L +DP R ++ LG+DAG + +IE L +F G + DVEPFLG A VPPWELTDAIDSGD+ AL++ RM+RGG+RH L IMATL HY R L LDG G+R EK AA +LGMKGSTFPAKKALN SRKLG +R LLA AD+DL+G SA P + V+EVL+ARLAR+SR Sbjct: 88 ARFTKAGEITALLQYLEDPLPTTVLVVVWEGSSKPGSTFAKLPPTLTKAITAAGGEVVDGDPQGRNIGGWVNDQFAEAGLDVDPRVRDKVAGSLGEDAGALIGLIERLKGAFAPGTRLTADDVEPFLGPAGGVPPWELTDAIDSGDVPTALDRLQRMMRGGDRHPLAIMATLQGHYVRMLRLDGSGVRSEKEAAQLLGMKGSTFPAKKALNQSRKLGGPGIRRAVGLLATADIDLKGNSAWPGELVMEVLVARLARLSR 346
BLAST of mRNA_M-pyrifera_M_contig74246.17584.1 vs. uniprot
Match: A0A7K1A3B1_9ACTN (DNA polymerase III subunit delta n=6 Tax=root TaxID=1 RepID=A0A7K1A3B1_9ACTN) HSP 1 Score: 259 bits (661), Expect = 1.050e-81 Identity = 136/262 (51.91%), Postives = 184/262 (70.23%), Query Frame = 1 Query: 4 AMFTRADQVAPLVKWLEAPLETTDLVLVWEKAS--SSGARMGAIPKSLKAAIKDAGGREVDAAP-SGKGRKALVERQLHDAALRLDPAARKRIIDHLGDDAGRVQPIIEALISSFGEGAAIGLADVEPFLGMAADVPPWELTDAIDSGDIALALNKADRMVRGGERHSLQIMATLHSHYQRALALDGLGLRDEKAAADILGMKGSTFPAKKALNLSRKLGHERLREVTLLLADADLDLRGASAMPHDAVIEVLIARLARVSR 780 A+F+ D PLV++LE PLETT LVLVWEK S + ++ A+PK+L A+ GG VD +P +GK + ++ ++ + L+LDPAAR+ ++DHLG D GR+ I+E L S FG G + D+EP+LG++ DV PW+LTDAID GD++ +L+ RM GG RH LQI+ATL +HY + + LD +R +K AAD+LGMKGSTFPAKKAL+ +R+LG ERL EV LLA ADLDL GA A P + V+EVL+ARLA +R Sbjct: 109 AVFSTKDACVPLVQYLEDPLETTSLVLVWEKDSRPNKQSKTPAVPKTLADAVSGCGGVVVDTSPGTGKAQGGWLDERISSSPLKLDPAARRSLVDHLGSDVGRLPAILEMLESVFGAGTKVSAPDIEPYLGVSGDVAPWDLTDAIDGGDVSGSLDVLQRMTIGGGRHPLQILATLSNHYLKMIRLDDPDIRGDKQAADVLGMKGSTFPAKKALDGARRLGSERLAEVAALLAQADLDLHGAKAWPPELVVEVLVARLAGRNR 370
BLAST of mRNA_M-pyrifera_M_contig74246.17584.1 vs. uniprot
Match: A0A6I3IGG3_9ACTN (DNA polymerase III subunit delta n=3 Tax=root TaxID=1 RepID=A0A6I3IGG3_9ACTN) HSP 1 Score: 255 bits (651), Expect = 1.500e-80 Identity = 133/262 (50.76%), Postives = 184/262 (70.23%), Query Frame = 1 Query: 4 AMFTRADQVAPLVKWLEAPLETTDLVLVWEK--ASSSGARMGAIPKSLKAAIKDAGGREVDAAP-SGKGRKALVERQLHDAALRLDPAARKRIIDHLGDDAGRVQPIIEALISSFGEGAAIGLADVEPFLGMAADVPPWELTDAIDSGDIALALNKADRMVRGGERHSLQIMATLHSHYQRALALDGLGLRDEKAAADILGMKGSTFPAKKALNLSRKLGHERLREVTLLLADADLDLRGASAMPHDAVIEVLIARLARVSR 780 A+F+ D APLV +L PL TT LVLVWEK + + A+PK+L AI AGG VD++P +GK + +E ++ D++L+ DPAAR+ ++DHLG D GR+ ++E L S +G G + D+EP+LGM+ DV PW+LTDAID GD++ +L+ +RM+ GG RH LQI+ATL +HY R + LD +R +K AA++LG+KGSTFPAKKAL+ +R+LG +RL E LLA ADLDL GA A P + V+EVL+ARLA +R Sbjct: 83 AVFSTKDACAPLVHYLSDPLATTSLVLVWEKDPRPNKQTKTPAVPKTLLEAITSAGGVVVDSSPGTGKAQSGWLEERIADSSLKFDPAARRTLVDHLGSDVGRLPALLEMLESVYGAGTKVSAPDIEPYLGMSGDVAPWDLTDAIDGGDVSGSLDVLNRMMVGGSRHPLQILATLSNHYLRMIRLDDPEIRSDKEAAEVLGIKGSTFPAKKALDGTRRLGSDRLAEFAALLAQADLDLHGAKAWPAELVVEVLVARLAGRNR 344
BLAST of mRNA_M-pyrifera_M_contig74246.17584.1 vs. uniprot
Match: UPI001C633F30 (hypothetical protein n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C633F30) HSP 1 Score: 254 bits (649), Expect = 1.740e-80 Identity = 135/260 (51.92%), Postives = 173/260 (66.54%), Query Frame = 1 Query: 1 LAMFTRADQVAPLVKWLEAPLETTDLVLVWEKASSSGARMGAIPKSLKAAIKDAGGREVDAAPSGKGRKALVERQLHDAALRLDPAARKRIIDHLGDDAGRVQPIIEALISSFGEGAAIGLADVEPFLGMAADVPPWELTDAIDSGDIALALNKADRMVRGGERHSLQIMATLHSHYQRALALDGLGLRDEKAAADILGMKGSTFPAKKALNLSRKLGHERLREVTLLLADADLDLRGASAMPHDAVIEVLIARLARVSR 780 L F AD + PL+ +L PL+TTDLVLVWE++ G R+G +P +L A+K AG VDA P K R+A V Q+ LRLD AA + LG+ AG V + E L+ G GAA+G+ +V P+LG A VPPWELTDAID G +AL++ RM+ GG RH LQ+MATL HY R L LDG G R EK AA +LG++GSTFPA+KAL++SR LG +R V LLA+ADL L+GA A P + V+EVL+ARLA +R Sbjct: 70 LGRFPNADALKPLLGYLADPLDTTDLVLVWERSPEPGTRLGNVPPTLTKALKAAGAEVVDADPPAKNREAWVTAQMKAHDLRLDRAAATLVAQQLGEGAGAVVELAERLVGVHGPGAALGVDEVRPWLGEAGGVPPWELTDAIDKGQADVALDRLHRMLHGGGRHELQVMATLQGHYARVLRLDGAGARSEKEAAQVLGLRGSTFPARKALDVSRTLGSPGIRRVIGLLAEADLALKGAQAWPGELVLEVLVARLAATAR 329
BLAST of mRNA_M-pyrifera_M_contig74246.17584.1 vs. uniprot
Match: A0A6I3A6S3_9ACTN (DNA polymerase III subunit delta n=2 Tax=root TaxID=1 RepID=A0A6I3A6S3_9ACTN) HSP 1 Score: 252 bits (643), Expect = 1.790e-79 Identity = 135/262 (51.53%), Postives = 185/262 (70.61%), Query Frame = 1 Query: 1 LAMFTRADQVAPLVKWLEAPLETTDLVLVWEKASSSGA-RMGAIPKSLKAAIKDAGGREVDAA-PSGKGRKALVERQLHDAALRLDPAARKRIIDHLGDDAGRVQPIIEALISSFGEGAAIGLADVEPFLGMAADVPPWELTDAIDSGDIALALNKADRMVRGGERHSLQIMATLHSHYQRALALDGLGLRDEKAAADILGMKGSTFPAKKALNLSRKLGHERLREVTLLLADADLDLRGASAMPHDAVIEVLIARLARVSR 780 L F++AD + L+ L PL +T LVLVWE+ S R+GA+PK L A+K AGG + PSGK + ++ +L++A++ LD AAR+ + LG+D RV ++ + +++G GA + AD+EPFLG A VPPWELTD+IDSG+IA AL+K RM+ GERH LQ++ATLH+HY R + LDG+G DE+ AA++LGMKGSTFPAKKAL SR+LG ++R+ T LLA+ADL LRG A P D V+EVL+ARLA ++R Sbjct: 80 LGRFSKADDLVALLTVLADPLASTRLVLVWERGQSPRQDRLGAVPKKLLEAVKAAGGVVHETGVPSGKAADSWLDERLNEASVTLDRAARQLVHQRLGEDRARVVGVLHTIETTYGPGAKVSAADIEPFLGEAGTVPPWELTDSIDSGNIADALDKLHRMLGAGERHPLQLLATLHTHYGRMMRLDGVGGLDERGAANLLGMKGSTFPAKKALTQSRRLGGPKVRQATRLLAEADLALRGTVAWPPDMVMEVLVARLANLAR 341
BLAST of mRNA_M-pyrifera_M_contig74246.17584.1 vs. uniprot
Match: A0A6J6NSP5_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J6NSP5_9ZZZZ) HSP 1 Score: 246 bits (628), Expect = 2.450e-78 Identity = 129/250 (51.60%), Postives = 177/250 (70.80%), Query Frame = 1 Query: 40 VKWLEAPLETTDLVLVWEK--ASSSGARMGAIPKSLKAAIKDAGGREVDAAP-SGKGRKALVERQLHDAALRLDPAARKRIIDHLGDDAGRVQPIIEALISSFGEGAAIGLADVEPFLGMAADVPPWELTDAIDSGDIALALNKADRMVRGGERHSLQIMATLHSHYQRALALDGLGLRDEKAAADILGMKGSTFPAKKALNLSRKLGHERLREVTLLLADADLDLRGASAMPHDAVIEVLIARLARVSR 780 +++LE PLETT LVLVWEK + ++ A+PKSL A+ GG VD +P +GK + ++ ++ ++L+LDPAAR+ ++DHLG D GR+ ++E L S FG G + D+EP+LG++ DV PW+LTDAID GD++ +L+ RM GG RH LQI+ATL +HY + + LD +R +K AAD+LGMKGSTFPAKKAL+ +R+LG +RL EV LLA ADLDL GA A P + VIEVL+ARLA +R Sbjct: 1 MQYLEDPLETTSLVLVWEKDPRPNKQSKTPAVPKSLADAVASCGGVVVDTSPGTGKAQGGWLDERISGSSLKLDPAARRALVDHLGSDVGRLPALLEMLESVFGAGTKVSAPDIEPYLGVSGDVAPWDLTDAIDGGDVSGSLDVLQRMTIGGGRHPLQILATLSNHYLKMIRLDDPDIRGDKQAADVLGMKGSTFPAKKALDGARRLGSDRLAEVAALLAQADLDLHGAKAWPPELVIEVLVARLAGRNR 250
BLAST of mRNA_M-pyrifera_M_contig74246.17584.1 vs. uniprot
Match: UPI001AA0A46D (DNA polymerase III subunit delta n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA0A46D) HSP 1 Score: 248 bits (633), Expect = 8.810e-78 Identity = 134/261 (51.34%), Postives = 183/261 (70.11%), Query Frame = 1 Query: 7 MFTRADQVAPLVKWLEAPLETTDLVLVWEKASSSGARMGAIPKSLKAAIKDAGGREVDA--APSGKGRKALVERQLHDAALRLDPAARKRIIDHLGDDAGRVQPIIEALISSFGEGAAIGLADVEPFLGMAADVPPWELTDAIDSGDIALALNKADRMVRGGERHSLQIMATLHSHYQRALALDGLGLRDEKAAADILGMKG-STFPAKKALNLSRKLGHERLREVTLLLADADLDLRGASAMPHDAVIEVLIARLARVSR 780 +F D VA V +L +PLETT LV+VWE+ GA++ A+PK+L A+ GG +D A K R A ++RQ+ ++A+ LD A++ ++D +G D GRV+ ++EAL+S+FG GA + D+EP+LG A ++P WELTDAID GDI AL++ RM+ G RH LQIMATLH H +R L L+G G+ DEK AA++LG++G STF A+KAL +R+LG ERL E+ LLA ADLDLRGA A P + V+EVL+ARLA SR Sbjct: 84 LFGTKDSVASFVDYLASPLETTSLVIVWERDPKPGAKLPAVPKALADAVCAVGGAVIDTSVADREKDRTAWIDRQIAESAVTLDVGAKRLLVDRVGGDLGRVRSVLEALVSTFGAGARLAAEDLEPYLGGAGELPTWELTDAIDRGDIPTALDRLARMLAAG-RHPLQIMATLHGHVERMLRLEGSGVGDEKQAAELLGLRGGSTFRARKALEQARRLGPERLHEMVELLAQADLDLRGAKAWPDELVMEVLVARLAGRSR 343
BLAST of mRNA_M-pyrifera_M_contig74246.17584.1 vs. uniprot
Match: A0A5Q2RIP9_9ACTN (DNA polymerase III subunit delta n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RIP9_9ACTN) HSP 1 Score: 244 bits (622), Expect = 2.270e-76 Identity = 134/261 (51.34%), Postives = 178/261 (68.20%), Query Frame = 1 Query: 1 LAMFTRADQVAPLVKWLEAPLETTDLVLVWEKASSSGARMGAIPKSLKAAIKDAGGREV--DAAPSGKGRKALVERQLHDAALRLDPAARKRIIDHLGDDAGRVQPIIEALISSFGEGAAIGLADVEPFLGMAADVPPWELTDAIDSGDIALALNKADRMVRGGERHSLQIMATLHSHYQRALALDGLGLRDEKAAADILGMKGSTFPAKKALNLSRKLGHERLREVTLLLADADLDLRGASAMPHDAVIEVLIARLARVS 777 LA FT A+ VAPLV +L+ PL TT LVLVW+K R A+PKSL A+K AG V D + KGR A ++ LH + + LD A+K + + LG+D RV I+ L S++G GA +G+A++EPF+G A VPPWELTDAI +GDIA AL++ RM+ GG+RH+LQIMATLH H + LDG G+R AA +LGM + FPA+K + L+R LG +R+R+ LLLA+ADLDLRGA + V+EVL+ARLAR+S Sbjct: 77 LARFTTAESVAPLVAYLDDPLPTTSLVLVWDKGPKFTGR-AAVPKSLNDALKRAGATVVATDVPANAKGRDAWLKEHLHASPVHLDARAQKVLAERLGEDLNRVGAILGVLESTYGPGAKVGVAELEPFVGEAGGVPPWELTDAISAGDIATALDRLRRMIEGGDRHALQIMATLHRHVAGLMKLDGSGVRSRDEAAKLLGM--APFPAEKLMRLARTLGSDRIRQQVLLLAEADLDLRGAKEWDDELVLEVLVARLARLS 334 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74246.17584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig74246.17584.1 >prot_M-pyrifera_M_contig74246.17584.1 ID=prot_M-pyrifera_M_contig74246.17584.1|Name=mRNA_M-pyrifera_M_contig74246.17584.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=259bp MFTRADQVAPLVKWLEAPLETTDLVLVWEKASSSGARMGAIPKSLKAAIKback to top mRNA from alignment at M-pyrifera_M_contig74246:297..1079- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig74246.17584.1 ID=mRNA_M-pyrifera_M_contig74246.17584.1|Name=mRNA_M-pyrifera_M_contig74246.17584.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=783bp|location=Sequence derived from alignment at M-pyrifera_M_contig74246:297..1079- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig74246:297..1079- >mRNA_M-pyrifera_M_contig74246.17584.1 ID=mRNA_M-pyrifera_M_contig74246.17584.1|Name=mRNA_M-pyrifera_M_contig74246.17584.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1554bp|location=Sequence derived from alignment at M-pyrifera_M_contig74246:297..1079- (Macrocystis pyrifera P11B4 male)back to top |