mRNA_M-pyrifera_M_contig74217.17581.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74217.17581.1
Unique NamemRNA_M-pyrifera_M_contig74217.17581.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74217.17581.1 vs. uniprot
Match: A0A7V1M0L5_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7V1M0L5_9BACT)

HSP 1 Score: 108 bits (271), Expect = 5.270e-28
Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 1 
Query:   16 VTTKDDIRKVEQAAEKAQFRNFNHAAASISKAAKQSIERADGPSQPGEAPHTHRRVFLRRAIRYKADK--QGAVIGPVKSIVGLSAAAHEFGGKYKGVNYPERPFMRPALVKSTPRFAGQWRGSI 384
            V T+ DI KV + A +A   +  HA ASI   AK+SI ++  P++PG+ P T RR  LR AIR+  +K  Q  VIGP   IVG SA AHEFGG+YK   YP+RPFM PAL K+  R    W GS+
Sbjct:    9 VKTRSDIPKVLRKARRANIESLGHAGASIRLTAKRSIRKSPNPAEPGKPPKT-RRGQLRSAIRFAVEKNRQRVVIGPDFRIVGQSARAHEFGGRYKRQRYPKRPFMGPALTKTKDRLPKHWAGSV 132
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BLAST of mRNA_M-pyrifera_M_contig74217.17581.1 vs. uniprot
Match: A0A7X7II00_9CLOT (Uncharacterized protein n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A7X7II00_9CLOT)

HSP 1 Score: 105 bits (263), Expect = 9.850e-27
Identity = 57/118 (48.31%), Postives = 74/118 (62.71%), Query Frame = 1 
Query:   37 RKVEQAAEKAQFRNFNHAAASISKAAKQSIERADGPSQPGEAPHTHRRVFLRRAIRYKADK--QGAVIGPVKSIVGLSAAAHEFGGKYKGVNYPERPFMRPALVKSTPRFAGQWRGSI 384
            RKVE+A      R+  HA A+I   A++SI R+   S PG+ PHT R   L+R++RY  +K  Q  +IGP  S+VG SA AHEFGG+Y+G  YP+RP M PAL+K   R    W GSI
Sbjct:   21 RKVERAMRDKSIRSLGHAGATIRLTARRSIRRSKNASHPGQPPHT-RFGQLKRSLRYSVEKVRQRVLIGPTYSVVGRSATAHEFGGRYRGQRYPKRPLMGPALMKIKDRLPRMWAGSI 137
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BLAST of mRNA_M-pyrifera_M_contig74217.17581.1 vs. uniprot
Match: A0A1V5GT70_9BACT (Uncharacterized protein n=1 Tax=Lentisphaerae bacterium ADurb.BinA184 TaxID=1852901 RepID=A0A1V5GT70_9BACT)

HSP 1 Score: 97.8 bits (242), Expect = 1.210e-23
Identity = 54/130 (41.54%), Postives = 79/130 (60.77%), Query Frame = 1 
Query:    1 MFTLRVTTKDDIRKVEQAAEKAQFRNFNHAAASISKAAKQSIERADGPSQPGEAPHTHRRVFLRRAIRYKADKQG--AVIGPVKSIVGLSAAAHEFGGKYKGVNYPERPFMRPALVKSTPRFAGQWRGSI 384
            M  ++ T++ + R + + A +   R+  HA A++   A++SI R+   S PG+ PH  RR  L+RA+RY  +K+    +IGP  ++VG SAAAHEFGG+YK   YP+RP M PAL+K   R    W  SI
Sbjct:    1 MIRVKATSRFEERGLRRRAAEGSIRSLEHAGAALRLTARRSIRRSRKASAPGQPPHA-RRGQLKRAVRYVVEKERERVLIGPAYTVVGRSAAAHEFGGRYKRQVYPKRPLMGPALLKIRSRLPRMWADSI 129
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BLAST of mRNA_M-pyrifera_M_contig74217.17581.1 vs. uniprot
Match: A0A1V5U6V2_9BACT (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A1V5U6V2_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 2.540e-20
Identity = 49/130 (37.69%), Postives = 73/130 (56.15%), Query Frame = 1 
Query:    1 MFTLRVTTKDDIRKVEQAAEKAQFRNFNHAAASISKAAKQSIERADGPSQPGEAPHTHRRVFLRRAIRYKADKQ--GAVIGPVKSIVGLSAAAHEFGGKYKGVNYPERPFMRPALVKSTPRFAGQWRGSI 384
            M   +V  + D   V++A +K   ++   A A   KAA+ ++ R+   S PG  PHT RR  L+R+I +  +K     VIGP KS++G+S  AHEFGG Y+   YP+R  M P L+K  P+    W+ S+
Sbjct:    1 MTGAKVRVEFDDEAVKKAVQKGGVKSLRSAGAYTRKAARNAVSRSSKSSSPGTPPHT-RRGLLKRSILFGVEKHRMAVVIGPAKSLIGISMTAHEFGGMYRRRKYPKRALMGPTLIKVFPQLPKLWKDSV 129
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BLAST of mRNA_M-pyrifera_M_contig74217.17581.1 vs. uniprot
Match: A0A0F9L7W6_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9L7W6_9ZZZZ)

HSP 1 Score: 73.9 bits (180), Expect = 3.380e-14
Identity = 51/141 (36.17%), Postives = 69/141 (48.94%), Query Frame = 1 
Query:    1 MFTLRVTTKDDIRKVEQAAEKAQFRNFNHAAASISKAAKQSIERADG--PSQPGEAPHTHR---------RVFLRRAIRYKADKQG--AVIGPVKSIVGLSAAAHEFGGKYKGVNYPERPFMRPALVKSTPRFAGQWRGSI 384
            MF +R  T      ++QA ++  +R    A   I   A  SI+ A     S PG+ PHT R         R  L ++I Y AD  G   V+GP  +I+G +    EFGG+ KG  YPERPFM PAL K  P+    W+  +
Sbjct:    1 MFGIRAKTTFRKSGLKQAMDRVSYRAIKEALFDIRAFAMASIKSAPRGKSSPPGQPPHTRRSRKKGGVKGRGRLPQSITYFADPDGLGGVVGPRFTIMGTAGGTLEFGGRRKGQEYPERPFMGPALRKVAPKLPWYWQAKL 141
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74217.17581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7V1M0L5_9BACT5.270e-2849.60Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A7X7II00_9CLOT9.850e-2748.31Uncharacterized protein n=1 Tax=Clostridiaceae bac... [more]
A0A1V5GT70_9BACT1.210e-2341.54Uncharacterized protein n=1 Tax=Lentisphaerae bact... [more]
A0A1V5U6V2_9BACT2.540e-2037.69Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A0F9L7W6_9ZZZZ3.380e-1436.17Uncharacterized protein n=1 Tax=marine sediment me... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74217contigM-pyrifera_M_contig74217:528..920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size393
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816640.8666704-CDS-M-pyrifera_M_contig74217:527..9201622816640.8666704-CDS-M-pyrifera_M_contig74217:527..920Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74217 528..920 -
1692278093.4727101-CDS-M-pyrifera_M_contig74217:527..9201692278093.4727101-CDS-M-pyrifera_M_contig74217:527..920Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74217 528..920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74217.17581.1prot_M-pyrifera_M_contig74217.17581.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74217 528..920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74217.17581.1

>prot_M-pyrifera_M_contig74217.17581.1 ID=prot_M-pyrifera_M_contig74217.17581.1|Name=mRNA_M-pyrifera_M_contig74217.17581.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
MFTLRVTTKDDIRKVEQAAEKAQFRNFNHAAASISKAAKQSIERADGPSQ
PGEAPHTHRRVFLRRAIRYKADKQGAVIGPVKSIVGLSAAAHEFGGKYKG
VNYPERPFMRPALVKSTPRFAGQWRGSIGS*
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mRNA from alignment at M-pyrifera_M_contig74217:528..920-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74217.17581.1 ID=mRNA_M-pyrifera_M_contig74217.17581.1|Name=mRNA_M-pyrifera_M_contig74217.17581.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig74217:528..920- (Macrocystis pyrifera P11B4 male)
ATGTTCACCCTGAGAGTCACCACGAAAGACGATATCCGCAAGGTTGAACA
AGCGGCTGAGAAGGCTCAGTTTCGCAACTTCAATCACGCCGCAGCATCGA
TCAGCAAAGCCGCAAAACAGTCCATTGAACGAGCGGACGGGCCAAGTCAA
CCAGGTGAGGCACCGCATACTCATCGCCGGGTGTTTTTGCGTAGGGCGAT
TCGATACAAGGCCGACAAGCAGGGCGCTGTGATTGGCCCAGTAAAAAGCA
TCGTTGGACTATCGGCAGCGGCCCATGAGTTCGGCGGAAAATACAAGGGC
GTCAACTATCCAGAACGTCCGTTCATGCGTCCAGCGTTAGTAAAATCCAC
GCCGCGATTCGCTGGCCAGTGGAGAGGTTCGATTGGCAGTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74217:528..920-

>mRNA_M-pyrifera_M_contig74217.17581.1 ID=mRNA_M-pyrifera_M_contig74217.17581.1|Name=mRNA_M-pyrifera_M_contig74217.17581.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig74217:528..920- (Macrocystis pyrifera P11B4 male)
ATGTTCACCCTGAGAGTCACCACGAAAGACGATATCCGCAAGGTTGAACA
AGCGGCTGAGAAGGCTCAGTTTCGCAACTTCAATCACGCCGCAGCATCGA
TCAGCAAAGCCGCAAAACAGTCCATTGAACGAGCGGACGGGCCAAGTCAA
CCAGGTGAGGCACCGCATACTCATCGCCGGGTGTTTTTGCGTAGGGCGAT
TCGATACAAGGCCGACAAGCAGGGCGCTGTGATTGGCCCAGTAAAAAGCA
TCGTTGGACTATCGGCAGCGGCCCATGAGTTCGGCGGAAAATACAAGGGC
GTCAACTATCCAGAACGTCCGTTCATGCGTCCAGCGTTAGTAAAATCCAC
GCCGCGATTCGCTGGCCAGTGGAGAGGTTCGATTGGCAGTTAAATGTTCA
CCCTGAGAGTCACCACGAAAGACGATATCCGCAAGGTTGAACAAGCGGCT
GAGAAGGCTCAGTTTCGCAACTTCAATCACGCCGCAGCATCGATCAGCAA
AGCCGCAAAACAGTCCATTGAACGAGCGGACGGGCCAAGTCAACCAGGTG
AGGCACCGCATACTCATCGCCGGGTGTTTTTGCGTAGGGCGATTCGATAC
AAGGCCGACAAGCAGGGCGCTGTGATTGGCCCAGTAAAAAGCATCGTTGG
ACTATCGGCAGCGGCCCATGAGTTCGGCGGAAAATACAAGGGCGTCAACT
ATCCAGAACGTCCGTTCATGCGTCCAGCGTTAGTAAAATCCACGCCGCGA
TTCGCTGGCCAGTGGAGAGGTTCGATTGGCAGTTAA
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