mRNA_M-pyrifera_M_contig74211.17577.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74211.17577.1
Unique NamemRNA_M-pyrifera_M_contig74211.17577.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74211.17577.1 vs. uniprot
Match: A0A517WFV3_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517WFV3_9PLAN)

HSP 1 Score: 177 bits (448), Expect = 1.610e-53
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 1
Query:    1 MGRYGKLFLVGVLIVAGGCMPGVHVKKNPADKDKGIRYYRPKPYLFIYPAGSETTTYNEGKKEKMVAEKSDEFVNIELQYLPDFSEEY 264
            MGRYGKLFLVGVLIVAGGCMPGV VKKNPAD DKGIRYYRPKPYLFIYPAGSETTTYNEGKKEKMVAEKSDEFVNIELQYLPDFSEEY
Sbjct:    1 MGRYGKLFLVGVLIVAGGCMPGVRVKKNPADNDKGIRYYRPKPYLFIYPAGSETTTYNEGKKEKMVAEKSDEFVNIELQYLPDFSEEY 88          
BLAST of mRNA_M-pyrifera_M_contig74211.17577.1 vs. uniprot
Match: UPI00118B1D4A (hypothetical protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=UPI00118B1D4A)

HSP 1 Score: 170 bits (430), Expect = 8.570e-51
Identity = 83/89 (93.26%), Postives = 87/89 (97.75%), Query Frame = 1
Query:    1 MGRYGKLFLVGVLIVAGGCMPGVHVKKNPADKDKGIRYYRPKPYLFIYPAGSETTTYN-EGKKEKMVAEKSDEFVNIELQYLPDFSEEY 264
            MGRYGKLFLVGVLIVAGGCMPGVHVKKNPADKDKGIRYYRPKPYLFIYPAG ETTTYN EGK+++MVA+KSDEFVNIELQYLPDFSEEY
Sbjct:    1 MGRYGKLFLVGVLIVAGGCMPGVHVKKNPADKDKGIRYYRPKPYLFIYPAGRETTTYNKEGKEQQMVADKSDEFVNIELQYLPDFSEEY 89          
BLAST of mRNA_M-pyrifera_M_contig74211.17577.1 vs. uniprot
Match: A0A6I6ALN2_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A6I6ALN2_9PLAN)

HSP 1 Score: 160 bits (406), Expect = 3.530e-47
Identity = 79/89 (88.76%), Postives = 83/89 (93.26%), Query Frame = 1
Query:    1 MGRYGKLFLVGVLIVAGGCMPGVHVKKNPADKDKGIRYYRPKPYLFIYPAGSETTTYNE-GKKEKMVAEKSDEFVNIELQYLPDFSEEY 264
            MGRYGKLFLVGVLIVAGGCMPGVHVKKNPADKDKGIRYYRPKPYLFIYPAG ETT+Y + G K+  VA+KSDEFVNIELQYLPDFSEEY
Sbjct:    1 MGRYGKLFLVGVLIVAGGCMPGVHVKKNPADKDKGIRYYRPKPYLFIYPAGRETTSYTDKGVKKSTVADKSDEFVNIELQYLPDFSEEY 89          
BLAST of mRNA_M-pyrifera_M_contig74211.17577.1 vs. uniprot
Match: A0A517WQ21_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WQ21_9PLAN)

HSP 1 Score: 93.6 bits (231), Expect = 8.490e-21
Identity = 45/83 (54.22%), Postives = 57/83 (68.67%), Query Frame = 1
Query:   16 KLFLVGVLIVAGGCMPGVHVKKNPADKDKGIRYYRPKPYLFIYPAGSETTTYNEGKKEKMVAEKSDEFVNIELQYLPDFSEEY 264
             + ++G++I+  GCMPGV VKKNP D+D GIRYYRPKPYL I P+ S   T   G  +      SD+FV ++L YLPDFSEEY
Sbjct:    7 NILILGLIILTSGCMPGVKVKKNPTDRDTGIRYYRPKPYLLITPS-SVKKTLGTGPTQTSETSPSDQFVEMKLDYLPDFSEEY 88          
BLAST of mRNA_M-pyrifera_M_contig74211.17577.1 vs. uniprot
Match: A0A7V5Q0J6_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7V5Q0J6_9PLAN)

HSP 1 Score: 69.3 bits (168), Expect = 5.160e-13
Identity = 40/80 (50.00%), Postives = 46/80 (57.50%), Query Frame = 1
Query:   25 LVGVLIVAGGCMPGVHVKKNPADKDKGIRYYRPKPYLFIYPAGSETTTYNEGKKEKMVAEKSDEFVNIELQYLPDFSEEY 264
            L+ +L+   GC+P   V  NP  +DKGIRYYRPKPYL + PA            E  VA      V IELQYLPDFSEEY
Sbjct:   11 LLPILLTTTGCLPRTTVVANPGPRDKGIRYYRPKPYLLVQPA------------EGPVAGGQ---VTIELQYLPDFSEEY 75          
BLAST of mRNA_M-pyrifera_M_contig74211.17577.1 vs. uniprot
Match: A0A5C6BFA2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly21 TaxID=2528014 RepID=A0A5C6BFA2_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 1.180e-11
Identity = 42/82 (51.22%), Postives = 47/82 (57.32%), Query Frame = 1
Query:   19 LFLVGVLIVAGGCMPGVHVKKNPADKDKGIRYYRPKPYLFIYPAGSETTTYNEGKKEKMVAEKSDEFVNIELQYLPDFSEEY 264
            L L   L+   GC P V V+KNP D D+GIRYYRPKPYL I PA    +     K E  +A      V I L YLPDFSEEY
Sbjct:   13 LLLSAFLVSIAGCTPKVIVRKNPDDCDRGIRYYRPKPYLKIEPAEIAIS-----KTETSIAPG---MVRISLVYLPDFSEEY 86          
BLAST of mRNA_M-pyrifera_M_contig74211.17577.1 vs. uniprot
Match: A0A3L7PJ00_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7PJ00_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 1.620e-11
Identity = 38/82 (46.34%), Postives = 47/82 (57.32%), Query Frame = 1
Query:   19 LFLVGVLIVAGGCMPGVHVKKNPADKDKGIRYYRPKPYLFIYPAGSETTTYNEGKKEKMVAEKSDEFVNIELQYLPDFSEEY 264
            L L  V ++A GC+P   V++NP   DKGIRYYRPKPYL + P  +  T            E S   V I+L Y+PDFSEEY
Sbjct:    7 LVLAVVALIACGCVPRTFVRRNPLPTDKGIRYYRPKPYLKVAPFVNAVT-----------GEASTTQVAIDLAYMPDFSEEY 77          
BLAST of mRNA_M-pyrifera_M_contig74211.17577.1 vs. uniprot
Match: A0A255RCV9_9BACT (Uncharacterized protein n=2 Tax=Rhodopirellula sp. MGV TaxID=2023130 RepID=A0A255RCV9_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 2.640e-11
Identity = 33/80 (41.25%), Postives = 47/80 (58.75%), Query Frame = 1
Query:   25 LVGVLIVAGGCMPGVHVKKNPADKDKGIRYYRPKPYLFIYPAGSETTTYNEGKKEKMVAEKSDEFVNIELQYLPDFSEEY 264
            L+ + +++ GC+P   V KNP D+DKG+RYYRPKP+L + P  ++              E  D +V IE   LPD+SEEY
Sbjct:    2 LIALCLLSTGCLPSTRVIKNPGDRDKGVRYYRPKPFLKLAPMTNKA------------GEPVDGYVTIEQTVLPDYSEEY 69          
BLAST of mRNA_M-pyrifera_M_contig74211.17577.1 vs. uniprot
Match: A0A1G3AAY2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium RBG_16_64_10 TaxID=1801970 RepID=A0A1G3AAY2_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 1.390e-10
Identity = 36/64 (56.25%), Postives = 37/64 (57.81%), Query Frame = 1
Query:   73 VKKNPADKDKGIRYYRPKPYLFIYPAGSETTTYNEGKKEKMVAEKSDEFVNIELQYLPDFSEEY 264
            V KNP D D+GIRYYRPKPYL I P                    SDEFV I LQYLPDFSEEY
Sbjct:   15 VTKNPDDCDRGIRYYRPKPYLLIQPTDHH----------------SDEFVTITLQYLPDFSEEY 62          
BLAST of mRNA_M-pyrifera_M_contig74211.17577.1 vs. uniprot
Match: A0A5C5ZLM9_9BACT (Uncharacterized protein n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C5ZLM9_9BACT)

HSP 1 Score: 65.1 bits (157), Expect = 2.160e-10
Identity = 36/75 (48.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:   40 IVAGGCMPGVHVKKNPADKDKGIRYYRPKPYLFIYPAGSETTTYNEGKKEKMVAEKSDEFVNIELQYLPDFSEEY 264
            +V  GC P V V+K+P D+D+G+RYYRPKPYL I PA        E    K  +      V I L Y+PDFSEEY
Sbjct:   27 LVLPGCTPKVIVRKSPTDQDRGVRYYRPKPYLKIEPA--------EVAVNKTQSSLVPGLVRISLVYMPDFSEEY 93          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74211.17577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A517WFV3_9PLAN1.610e-5397.73Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
UPI00118B1D4A8.570e-5193.26hypothetical protein n=1 Tax=Gimesia chilikensis T... [more]
A0A6I6ALN2_9PLAN3.530e-4788.76Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A517WQ21_9PLAN8.490e-2154.22Uncharacterized protein n=1 Tax=Gimesia aquarii Ta... [more]
A0A7V5Q0J6_9PLAN5.160e-1350.00Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A5C6BFA2_9BACT1.180e-1151.22Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A3L7PJ00_9BACT1.620e-1146.34Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A255RCV9_9BACT2.640e-1141.25Uncharacterized protein n=2 Tax=Rhodopirellula sp.... [more]
A0A1G3AAY2_9BACT1.390e-1056.25Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A5C5ZLM9_9BACT2.160e-1048.00Uncharacterized protein n=1 Tax=Rhodopirellula pil... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74211contigM-pyrifera_M_contig74211:818..1081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size264
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816640.727668-CDS-M-pyrifera_M_contig74211:817..10811622816640.727668-CDS-M-pyrifera_M_contig74211:817..1081Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74211 818..1081 +
1692278093.3986247-CDS-M-pyrifera_M_contig74211:817..10811692278093.3986247-CDS-M-pyrifera_M_contig74211:817..1081Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74211 818..1081 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74211.17577.1prot_M-pyrifera_M_contig74211.17577.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74211 818..1081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74211.17577.1

>prot_M-pyrifera_M_contig74211.17577.1 ID=prot_M-pyrifera_M_contig74211.17577.1|Name=mRNA_M-pyrifera_M_contig74211.17577.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
MGRYGKLFLVGVLIVAGGCMPGVHVKKNPADKDKGIRYYRPKPYLFIYPA
GSETTTYNEGKKEKMVAEKSDEFVNIELQYLPDFSEEY
back to top

mRNA from alignment at M-pyrifera_M_contig74211:818..1081+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74211.17577.1 ID=mRNA_M-pyrifera_M_contig74211.17577.1|Name=mRNA_M-pyrifera_M_contig74211.17577.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig74211:818..1081+ (Macrocystis pyrifera P11B4 male)
ATGGGCCGTTATGGAAAACTGTTTTTAGTGGGCGTACTGATTGTAGCCGG AGGCTGTATGCCTGGCGTGCATGTAAAGAAAAACCCAGCAGATAAGGATA AAGGAATTCGCTACTACCGCCCCAAGCCGTACCTGTTTATTTACCCCGCT GGTAGTGAAACGACCACCTATAATGAGGGAAAAAAGGAAAAAATGGTGGC GGAGAAGAGTGACGAGTTTGTGAATATCGAACTTCAGTATCTGCCCGACT TCTCTGAAGAATAT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig74211:818..1081+

>mRNA_M-pyrifera_M_contig74211.17577.1 ID=mRNA_M-pyrifera_M_contig74211.17577.1|Name=mRNA_M-pyrifera_M_contig74211.17577.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig74211:818..1081+ (Macrocystis pyrifera P11B4 male)
ATGGGCCGTTATGGAAAACTGTTTTTAGTGGGCGTACTGATTGTAGCCGG
AGGCTGTATGCCTGGCGTGCATGTAAAGAAAAACCCAGCAGATAAGGATA
AAGGAATTCGCTACTACCGCCCCAAGCCGTACCTGTTTATTTACCCCGCT
GGTAGTGAAACGACCACCTATAATGAGGGAAAAAAGGAAAAAATGGTGGC
GGAGAAGAGTGACGAGTTTGTGAATATCGAACTTCAGTATCTGCCCGACT
TCTCTGAAGAATATATGGGCCGTTATGGAAAACTGTTTTTAGTGGGCGTA
CTGATTGTAGCCGGAGGCTGTATGCCTGGCGTGCATGTAAAGAAAAACCC
AGCAGATAAGGATAAAGGAATTCGCTACTACCGCCCCAAGCCGTACCTGT
TTATTTACCCCGCTGGTAGTGAAACGACCACCTATAATGAGGGAAAAAAG
GAAAAAATGGTGGCGGAGAAGAGTGACGAGTTTGTGAATATCGAACTTCA
GTATCTGCCCGACTTCTCTGAAGAATAT
back to top