mRNA_M-pyrifera_M_contig74211.17576.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74211.17576.1
Unique NamemRNA_M-pyrifera_M_contig74211.17576.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74211.17576.1 vs. uniprot
Match: A0A2E7KAQ7_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KAQ7_9PLAN)

HSP 1 Score: 249 bits (635), Expect = 1.320e-83
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 1 
Query:    1 MTSRLVQFISRLFSRKRDIVNYLSVADGIDFQLRDGTVTTGFRWPDVTRIETYKIDLMVYDEVALRFSTSTGRYEILEGHAAFQDCFAELEQQFGLSPEWYFQVMEQAFETNHRVLYQKAGVGSN 375
            MTSRLVQFISRLFSRKRDIVNYLSVADGIDFQLRDGTVT GFRWPDVTRIETYKIDLMVYDEVALRFST+ GRYEILEGHAAFQDCFAELEQQFGLSPEWYFQVMEQAFETNHRVLYQKAGVGSN
Sbjct:    1 MTSRLVQFISRLFSRKRDIVNYLSVADGIDFQLRDGTVTPGFRWPDVTRIETYKIDLMVYDEVALRFSTTAGRYEILEGHAAFQDCFAELEQQFGLSPEWYFQVMEQAFETNHRVLYQKAGVGSN 125
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BLAST of mRNA_M-pyrifera_M_contig74211.17576.1 vs. uniprot
Match: A0A517QA03_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517QA03_9PLAN)

HSP 1 Score: 209 bits (532), Expect = 5.130e-67
Identity = 101/125 (80.80%), Postives = 110/125 (88.00%), Query Frame = 1 
Query:    1 MTSRLVQFISRLFSRKRDIVNYLSVADGIDFQLRDGTVTTGFRWPDVTRIETYKIDLMVYDEVALRFSTSTGRYEILEGHAAFQDCFAELEQQFGLSPEWYFQVMEQAFETNHRVLYQKAGVGSN 375
            MTSRLVQ I++LFSRKRDIVN+LS A+GIDF+LRDG+V  GFRW  VTRIET KIDLMVYDEVALRF+T  GRYEILEGH AFQ+CFA LEQQFGLSPEWYFQVME AFETNHRVLYQK  + SN
Sbjct:   63 MTSRLVQIIAKLFSRKRDIVNFLSAAEGIDFRLRDGSVVPGFRWSQVTRIETCKIDLMVYDEVALRFTTDKGRYEILEGHTAFQECFAHLEQQFGLSPEWYFQVMENAFETNHRVLYQKESIRSN 187
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BLAST of mRNA_M-pyrifera_M_contig74211.17576.1 vs. uniprot
Match: A0A518FS80_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FS80_9PLAN)

HSP 1 Score: 169 bits (428), Expect = 5.740e-52
Identity = 83/131 (63.36%), Postives = 100/131 (76.34%), Query Frame = 1 
Query:    1 MTSRLVQFISRLFSRKRDIVNYLSVAD------GIDFQLRDGTVTTGFRWPDVTRIETYKIDLMVYDEVALRFSTSTGRYEILEGHAAFQDCFAELEQQFGLSPEWYFQVMEQAFETNHRVLYQKAGVGSN 375
            MTSRLVQF ++LFSR+RD    L  +       G+DF++RDG +  GF W +VTRIETYK+DL+ YDEVAL F+T+ G +EILE    F+DCFA+LEQQFGLSPEWYFQVME AFETNHRVLYQK  + SN
Sbjct:    1 MTSRLVQFFAKLFSRQRDDARNLYESACLIDDAGLDFRMRDGLLVPGFYWSEVTRIETYKLDLLTYDEVALLFTTADGCFEILESQTGFKDCFAQLEQQFGLSPEWYFQVMEHAFETNHRVLYQKENIRSN 131
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BLAST of mRNA_M-pyrifera_M_contig74211.17576.1 vs. uniprot
Match: A0A517X0P6_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X0P6_9PLAN)

HSP 1 Score: 126 bits (317), Expect = 2.960e-35
Identity = 56/116 (48.28%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:   13 LVQFISRLFSRKRDIVNYLSVADGIDFQLRDGTVTTGFRWPDVTRIETYKIDLMVYDEVALRFSTSTGRYEILEGHAAFQDCFAELEQQFGLSPEWYFQVMEQAFETNHRVLYQKA 360
            L +  ++LF RK D+++Y+ V  G+  + RDGTV  GF W DV +IE YK+DLM+YDEVAL F T   ++EILEGH+AFQ+  +EL   F +   WY   +E+ FETN + LY+K+
Sbjct:    2 LAKIFAKLFMRKNDVIDYVVVDSGVFCKKRDGTVVEGFHWSDVDQIEVYKVDLMIYDEVALLFKTENAKHEILEGHSAFQELISELHHYFDVRESWYLDAIEKPFETNWKTLYKKS 117
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BLAST of mRNA_M-pyrifera_M_contig74211.17576.1 vs. uniprot
Match: A0A2E2C8A7_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C8A7_9PLAN)

HSP 1 Score: 93.6 bits (231), Expect = 3.650e-22
Identity = 50/119 (42.02%), Postives = 70/119 (58.82%), Query Frame = 1 
Query:    1 MTSRLVQFISRLFSRKRDIVNYLSVADGIDFQLRDGTVTTGFRWPDVTRIETYKIDLMVYDEVALRFSTSTGRYEILEGHAAFQDCFAELEQQFGLSPEWYFQVMEQAFETNHRVLYQK 357
            M  RL Q   +LFSR+ ++ +YL    GI  ++ D   T  F W +VT IE  K+D   YDEVAL+F+T  G +EILE H AF+     L +Q+ +   W+  V+E  FE N+ +LYQK
Sbjct:    1 MKQRLYQKFVKLFSRQNNVTDYLINQAGIVRKINDDIETQVFCWSEVTIIEVCKLDFFSYDEVALQFTTPEGCFEILEKHTAFEQLKIFLPEQYNVPLTWFSTVVENPFEYNYALLYQK 119
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74211.17576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2E7KAQ7_9PLAN1.320e-8397.60Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A517QA03_9PLAN5.130e-6780.80Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A518FS80_9PLAN5.740e-5263.36Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A517X0P6_9PLAN2.960e-3548.28Uncharacterized protein n=1 Tax=Gimesia aquarii Ta... [more]
A0A2E2C8A7_9PLAN3.650e-2242.02Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74211contigM-pyrifera_M_contig74211:77..454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size378
Cds size378
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816640.693835-CDS-M-pyrifera_M_contig74211:76..4541622816640.693835-CDS-M-pyrifera_M_contig74211:76..454Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74211 77..454 -
1692278093.3821392-CDS-M-pyrifera_M_contig74211:76..4541692278093.3821392-CDS-M-pyrifera_M_contig74211:76..454Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74211 77..454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74211.17576.1prot_M-pyrifera_M_contig74211.17576.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74211 77..454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74211.17576.1

>prot_M-pyrifera_M_contig74211.17576.1 ID=prot_M-pyrifera_M_contig74211.17576.1|Name=mRNA_M-pyrifera_M_contig74211.17576.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
MTSRLVQFISRLFSRKRDIVNYLSVADGIDFQLRDGTVTTGFRWPDVTRI
ETYKIDLMVYDEVALRFSTSTGRYEILEGHAAFQDCFAELEQQFGLSPEW
YFQVMEQAFETNHRVLYQKAGVGSN*
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mRNA from alignment at M-pyrifera_M_contig74211:77..454-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74211.17576.1 ID=mRNA_M-pyrifera_M_contig74211.17576.1|Name=mRNA_M-pyrifera_M_contig74211.17576.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig74211:77..454- (Macrocystis pyrifera P11B4 male)
ATGACGAGCCGACTCGTCCAGTTCATTTCCAGACTCTTCTCGCGGAAGCG
GGATATCGTCAATTACCTGAGCGTCGCTGACGGCATTGATTTCCAGTTGC
GGGATGGCACCGTGACGACGGGGTTCCGCTGGCCTGACGTGACGCGAATC
GAGACCTATAAAATTGATCTGATGGTCTACGATGAAGTCGCCCTGCGGTT
CAGCACCTCTACCGGGCGGTATGAGATTCTCGAAGGACACGCTGCCTTTC
AGGACTGCTTTGCGGAACTGGAACAACAGTTTGGCCTCTCACCCGAATGG
TATTTTCAGGTGATGGAGCAGGCCTTTGAGACGAACCACCGGGTGCTGTA
TCAGAAAGCAGGCGTCGGTTCGAACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74211:77..454-

>mRNA_M-pyrifera_M_contig74211.17576.1 ID=mRNA_M-pyrifera_M_contig74211.17576.1|Name=mRNA_M-pyrifera_M_contig74211.17576.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig74211:77..454- (Macrocystis pyrifera P11B4 male)
ATGACGAGCCGACTCGTCCAGTTCATTTCCAGACTCTTCTCGCGGAAGCG
GGATATCGTCAATTACCTGAGCGTCGCTGACGGCATTGATTTCCAGTTGC
GGGATGGCACCGTGACGACGGGGTTCCGCTGGCCTGACGTGACGCGAATC
GAGACCTATAAAATTGATCTGATGGTCTACGATGAAGTCGCCCTGCGGTT
CAGCACCTCTACCGGGCGGTATGAGATTCTCGAAGGACACGCTGCCTTTC
AGGACTGCTTTGCGGAACTGGAACAACAGTTTGGCCTCTCACCCGAATGG
TATTTTCAGGTGATGGAGCAGGCCTTTGAGACGAACCACCGGGTGCTGTA
TCAGAAAGCAGGCGTCGGTTCGAACTGAATGACGAGCCGACTCGTCCAGT
TCATTTCCAGACTCTTCTCGCGGAAGCGGGATATCGTCAATTACCTGAGC
GTCGCTGACGGCATTGATTTCCAGTTGCGGGATGGCACCGTGACGACGGG
GTTCCGCTGGCCTGACGTGACGCGAATCGAGACCTATAAAATTGATCTGA
TGGTCTACGATGAAGTCGCCCTGCGGTTCAGCACCTCTACCGGGCGGTAT
GAGATTCTCGAAGGACACGCTGCCTTTCAGGACTGCTTTGCGGAACTGGA
ACAACAGTTTGGCCTCTCACCCGAATGGTATTTTCAGGTGATGGAGCAGG
CCTTTGAGACGAACCACCGGGTGCTGTATCAGAAAGCAGGCGTCGGTTCG
AACTGA
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