mRNA_M-pyrifera_M_contig74181.17566.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74181.17566.1
Unique NamemRNA_M-pyrifera_M_contig74181.17566.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74181.17566.1 vs. uniprot
Match: A0A7S0JLZ9_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JLZ9_CAFRO)

HSP 1 Score: 97.4 bits (241), Expect = 1.220e-21
Identity = 47/90 (52.22%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 VEALSVASIPLHARVQVGGMVLARAVRYLGRLRATGTGRETRDRWWADLRAELSAHARALHCSHILGYREYAAISDDVCVLTVVGTAVRI 270
            V+ L+V ++P+  + ++GG+V+ R+V+YLGRLRA   G+  RDRWW +LR E+ AHA  L C  +LGYRE A I DDV V+T VGTA R+
Sbjct:  126 VQLLTVTALPVTVQYRLGGIVMTRSVKYLGRLRAGTEGQGRRDRWWEELRDEIRAHAAQLRCPQVLGYREAAHIHDDVLVMTAVGTAARL 215
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BLAST of mRNA_M-pyrifera_M_contig74181.17566.1 vs. uniprot
Match: A0A836CKY6_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKY6_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 4.300e-21
Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:    1 VEALSVASIPLHARVQVGGMVLARAVRYLGRLRATGTGRETRDRWWADLRAELSAHARALHCSHILGYREYAAISDDVCVLTVVGTAV 264
            V+ L++     H +V++GG+V++R+V+ LG+L +  + +ETRD WWA+LR EL +HA+ L CSH++GYRE   I DDVC+L   GTAV
Sbjct:  391 VQLLTMTEFEPHVKVRIGGLVMSRSVKNLGKLASKLSDQETRDGWWAELREELRSHAKMLSCSHVVGYREATTIHDDVCILAATGTAV 478
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BLAST of mRNA_M-pyrifera_M_contig74181.17566.1 vs. uniprot
Match: K0T113_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T113_THAOC)

HSP 1 Score: 94.4 bits (233), Expect = 1.480e-20
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:    1 VEALSVASIPLHARVQVGGMVLARAVRYLGRLRATGTGRETRDRWWADLRAELSAHARALHCSHILGYREYAAISDDVCVLTVVGTAVRIR 273
            V  L+V +     RV++GG+V AR+V+YLG L +  + +ETRD WW +LR E+ +HA+ L CSH++GY E + I DDVCVL+V GTA  +R
Sbjct:  122 VRLLTVNAFDPRVRVRIGGLVTARSVKYLGNLASKLSDQETRDGWWTELRDEIKSHAKILCCSHVVGYVESSTIHDDVCVLSVTGTAATVR 212
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BLAST of mRNA_M-pyrifera_M_contig74181.17566.1 vs. uniprot
Match: B8BXV2_THAPS (C2 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXV2_THAPS)

HSP 1 Score: 93.6 bits (231), Expect = 2.730e-20
Identity = 41/80 (51.25%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:   34 HARVQVGGMVLARAVRYLGRLRATGTGRETRDRWWADLRAELSAHARALHCSHILGYREYAAISDDVCVLTVVGTAVRIR 273
              RV++GG+V AR+V+YLG+L +  + +ETRD WW +LR E+ +HAR L C H++GY E + I DDVCVL++ GTA  +R
Sbjct:  445 RVRVRIGGLVTARSVKYLGKLASKLSDQETRDGWWTELRDEIRSHARTLCCWHVIGYNESSTIHDDVCVLSITGTAATVR 524
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BLAST of mRNA_M-pyrifera_M_contig74181.17566.1 vs. uniprot
Match: A0A7S2E6P7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E6P7_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 7.620e-20
Identity = 41/91 (45.05%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    1 VEALSVASIPLHARVQVGGMVLARAVRYLGRLRATGTGRETRDRWWADLRAELSAHARALHCSHILGYREYAAISDDVCVLTVVGTAVRIR 273
            V+ L++       RV++GG+V AR+V+YL  + +  + +ETRD WW++LR E+ +HAR L C H++GY E   I DDVCVL++ GTA  +R
Sbjct:   31 VQLLTLKEFGTRVRVRIGGLVTARSVKYLANIASRLSDQETRDGWWSELRDEIRSHARTLCCWHVIGYTEATTIYDDVCVLSITGTAATVR 121
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BLAST of mRNA_M-pyrifera_M_contig74181.17566.1 vs. uniprot
Match: A0A7S4VGH9_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VGH9_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 4.530e-19
Identity = 41/91 (45.05%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    1 VEALSVASIPLHARVQVGGMVLARAVRYLGRLRATGTGRETRDRWWADLRAELSAHARALHCSHILGYREYAAISDDVCVLTVVGTAVRIR 273
            V+ L++       RV++GG+V AR+V+YL  + +  + +ETRD WW++LR E+ +HAR L C H++GY E   I DDVCVL++ GTA  +R
Sbjct:   62 VQLLTLKEFGTRVRVRIGGLVTARSVKYLANIASRLSDQETRDGWWSELRDEIRSHARTLCCWHVIGYTEATTIYDDVCVLSITGTAATVR 152
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BLAST of mRNA_M-pyrifera_M_contig74181.17566.1 vs. uniprot
Match: A0A7S1C5U6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5U6_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 9.810e-18
Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:    1 VEALSVASIPLHARVQVGGMVLARAVRYLGRLRATGTGRETRDRWWADLRAELSAHARALHCSHILGYREYAAISDDVCVLTVVGTAVR 267
            V+ LS+  +PL  ++ +GG+V AR+V+ L  L         RD WW +LR EL +HA  L C  I+GYRE A I DDVCV++VVGTAVR
Sbjct:  468 VQILSITEVPLGVKIALGGLVGARSVKSLRALHTKAFDVSRRDEWWDELRDELRSHAFQLRCPQIIGYRESADIHDDVCVMSVVGTAVR 556
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BLAST of mRNA_M-pyrifera_M_contig74181.17566.1 vs. uniprot
Match: A0A3P3YNB6_PLABS (C2 domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YNB6_PLABS)

HSP 1 Score: 78.2 bits (191), Expect = 6.980e-15
Identity = 40/89 (44.94%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    1 VEALSVASIPLHARVQVGGMVLARAVRYLGRLRATGTGRETRDRWWADLRAELSAHARALHCSHILGYREYAAISD-DVCVLTVVGTAV 264
            V+ L+++ +P    + VGG+V A +++ LG      T RE RD+WW ++R E+ AHARALHC  +LGY E   I + DVC+L+ +GTAV
Sbjct:  319 VQLLTISYLPDRFNMTVGGVVSAHSIKLLGH---KNTDREFRDKWWQEVRNEIRAHARALHCHVVLGYSETTTIVESDVCILSAIGTAV 404
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BLAST of mRNA_M-pyrifera_M_contig74181.17566.1 vs. uniprot
Match: A0A4P9YVR7_9FUNG (C2 domain-containing protein (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YVR7_9FUNG)

HSP 1 Score: 73.6 bits (179), Expect = 2.920e-13
Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:    4 EALSVASIPLHARVQVGGMVLARAVRYLGRLRATGTGRETRDRWWADLRAELSAHARALHCSHILGYREYAAISDDVCVLTVVGTA 261
            E  ++ + P  A V++GG+V AR+V+ +     T      R+ WW++LR E+  HARAL CS ++GY E  AI DD+CVL+V GTA
Sbjct:  326 ELFAIDTFPPGAIVRLGGLVTARSVKLIDSGNLT-----IRETWWSELREEIREHARALGCSSVIGYTETTAIHDDLCVLSVAGTA 406
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BLAST of mRNA_M-pyrifera_M_contig74181.17566.1 vs. uniprot
Match: A0A6I8TE20_AEDAE (C2 domain-containing protein n=5 Tax=Stegomyia TaxID=53541 RepID=A0A6I8TE20_AEDAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.960e-13
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:   10 LSVASIPLHARVQVGGMVLARAVRYLGRLRATGTGRETRDRWWADLRAELSAHARALHCSHILGYREYAAISDDVCVLTVVGTA 261
            L++  +P    + +G  V AR+V+ L R+       ETRD WW +LR E+ +HARA+ C+ +LGY E   IS+DVCVL+ +GTA
Sbjct:  383 LTITKVPPGFVLHLGATVSARSVKLLARV-PNPDDPETRDMWWNELRMEIRSHARAIGCNMVLGYTETTTISEDVCVLSAIGTA 465
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74181.17566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0JLZ9_CAFRO1.220e-2152.22Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A836CKY6_9STRA4.300e-2148.86C2 domain-containing protein n=1 Tax=Tribonema min... [more]
K0T113_THAOC1.480e-2049.45Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B8BXV2_THAPS2.730e-2051.25C2 domain-containing protein (Fragment) n=1 Tax=Th... [more]
A0A7S2E6P7_9STRA7.620e-2045.05Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S4VGH9_9STRA4.530e-1945.05Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
A0A7S1C5U6_9STRA9.810e-1849.44Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A3P3YNB6_PLABS6.980e-1544.94C2 domain-containing protein n=2 Tax=Plasmodiophor... [more]
A0A4P9YVR7_9FUNG2.920e-1344.19C2 domain-containing protein (Fragment) n=1 Tax=Sy... [more]
A0A6I8TE20_AEDAE2.960e-1344.05C2 domain-containing protein n=5 Tax=Stegomyia Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74181contigM-pyrifera_M_contig74181:255..527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue3e-17
Seed eggNOG ortholog159749.K0T113
Preferred nameC2CD5
KEGG koko:K20051
Hectar predicted targeting categoryother localisation
GOsGO:0000149,GO:0001505,GO:0001726,GO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005543,GO:0005544,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006810,GO:0006836,GO:0006886,GO:0006887,GO:0006906,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007267,GO:0007268,GO:0007269,GO:0008104,GO:0008150,GO:0008286,GO:0008289,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010638,GO:0010827,GO:0010828,GO:0012506,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016079,GO:0016192,GO:0017156,GO:0017157,GO:0017158,GO:0019905,GO:0023052,GO:0023061,GO:0030276,GO:0030659,GO:0031090,GO:0031252,GO:0031253,GO:0031256,GO:0031338,GO:0031340,GO:0031410,GO:0031982,GO:0032386,GO:0032388,GO:0032587,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0033043,GO:0033157,GO:0034613,GO:0034762,GO:0034764,GO:0038028,GO:0042221,GO:0042886,GO:0042995,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043434,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045055,GO:0045184,GO:0046324,GO:0046326,GO:0046872,GO:0046903,GO:0046907,GO:0048284,GO:0048489,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048791,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0055085,GO:0060341,GO:0060627,GO:0061024,GO:0061025,GO:0065002,GO:0065007,GO:0065008,GO:0070201,GO:0070727,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090087,GO:0090174,GO:0090313,GO:0090314,GO:0090316,GO:0097479,GO:0097480,GO:0097708,GO:0098590,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099568,GO:0099643,GO:0120025,GO:0120038,GO:1900076,GO:1900078,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903305,GO:1903530,GO:1903533,GO:1903827,GO:1903829,GO:1904951,GO:1905475,GO:1905477,GO:1990778,GO:2001273,GO:2001275
EggNOG free text desc.insulin receptor signaling pathway via phosphatidylinositol 3-kinase
EggNOG OGs2XB0J@2836,KOG1031@1,KOG1031@2759
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816640.2787056-CDS-M-pyrifera_M_contig74181:254..5271622816640.2787056-CDS-M-pyrifera_M_contig74181:254..527Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74181 255..527 -
1692278093.2143512-CDS-M-pyrifera_M_contig74181:254..5271692278093.2143512-CDS-M-pyrifera_M_contig74181:254..527Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74181 255..527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74181.17566.1prot_M-pyrifera_M_contig74181.17566.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74181 255..527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74181.17566.1

>prot_M-pyrifera_M_contig74181.17566.1 ID=prot_M-pyrifera_M_contig74181.17566.1|Name=mRNA_M-pyrifera_M_contig74181.17566.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
VEALSVASIPLHARVQVGGMVLARAVRYLGRLRATGTGRETRDRWWADLR
AELSAHARALHCSHILGYREYAAISDDVCVLTVVGTAVRIR
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mRNA from alignment at M-pyrifera_M_contig74181:255..527-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74181.17566.1 ID=mRNA_M-pyrifera_M_contig74181.17566.1|Name=mRNA_M-pyrifera_M_contig74181.17566.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig74181:255..527- (Macrocystis pyrifera P11B4 male)
GTGGAAGCCCTCTCAGTGGCCTCCATCCCTCTCCACGCCAGGGTGCAAGT
GGGAGGCATGGTGCTAGCAAGGGCAGTGCGCTATCTCGGTCGGCTTCGGG
CCACGGGAACTGGGAGGGAAACGAGAGACCGTTGGTGGGCGGATCTCAGA
GCGGAGCTCAGCGCACACGCCAGAGCACTCCATTGCTCCCACATCCTAGG
CTACAGAGAATACGCAGCCATCTCAGACGACGTGTGTGTCCTCACAGTCG
TGGGAACTGCAGTACGCATCCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74181:255..527-

>mRNA_M-pyrifera_M_contig74181.17566.1 ID=mRNA_M-pyrifera_M_contig74181.17566.1|Name=mRNA_M-pyrifera_M_contig74181.17566.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig74181:255..527- (Macrocystis pyrifera P11B4 male)
GTGGAAGCCCTCTCAGTGGCCTCCATCCCTCTCCACGCCAGGGTGCAAGT
GGGAGGCATGGTGCTAGCAAGGGCAGTGCGCTATCTCGGTCGGCTTCGGG
CCACGGGAACTGGGAGGGAAACGAGAGACCGTTGGTGGGCGGATCTCAGA
GCGGAGCTCAGCGCACACGCCAGAGCACTCCATTGCTCCCACATCCTAGG
CTACAGAGAATACGCAGCCATCTCAGACGACGTGTGTGTCCTCACAGTCG
TGGGAACTGCAGTACGCATCCGAGTGGAAGCCCTCTCAGTGGCCTCCATC
CCTCTCCACGCCAGGGTGCAAGTGGGAGGCATGGTGCTAGCAAGGGCAGT
GCGCTATCTCGGTCGGCTTCGGGCCACGGGAACTGGGAGGGAAACGAGAG
ACCGTTGGTGGGCGGATCTCAGAGCGGAGCTCAGCGCACACGCCAGAGCA
CTCCATTGCTCCCACATCCTAGGCTACAGAGAATACGCAGCCATCTCAGA
CGACGTGTGTGTCCTCACAGTCGTGGGAACTGCAGTACGCATCCGA
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