mRNA_M-pyrifera_M_contig74134.17557.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74134.17557.1
Unique NamemRNA_M-pyrifera_M_contig74134.17557.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74134.17557.1 vs. uniprot
Match: UPI0006D4EBC0 (ankyrin-3-like n=1 Tax=Halyomorpha halys TaxID=286706 RepID=UPI0006D4EBC0)

HSP 1 Score: 58.2 bits (139), Expect = 1.380e-7
Identity = 33/105 (31.43%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:    1 GLSPLMQAIKYEQTESVKLLFNHHANVDQRAQGFYAGWTPLHFACAQDDFNLFKLVLSKTSDLQVVNDLGENPLHTALIWDKLLYVKPLLKADIDVNTQDNFQKT 315
            G SPL +AI+++  ESVK L      +D        GW+ LH A  +D  N+ +L+L + + +    + G+ PLH A+  ++    K L+K+  +VN +++  KT
Sbjct:  889 GASPLFEAIRWDNIESVKALMTWTI-LDTNNTRKSDGWSCLHEAVYRDSLNIVELLLDRDAYIDAQTNAGDTPLHLAVENNRYKIAKKLIKSGANVNIKNSDGKT 992
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BLAST of mRNA_M-pyrifera_M_contig74134.17557.1 vs. uniprot
Match: A0A6H5IK59_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IK59_9HYME)

HSP 1 Score: 53.1 bits (126), Expect = 7.840e-6
Identity = 40/114 (35.09%), Postives = 60/114 (52.63%), Query Frame = 1 
Query:    1 GLSPLMQAIKYEQTESVKLLFNHHANVDQRAQGFYAGWTPLHFA-CAQDDFNLFKLV------LSKTSDLQVVNDLGENPLHTALIWDKLLYVKPLLKADIDVNTQDNFQKTPL 321
            G SPL  A++    E  +LL  + AN +  A G+  G TPLH      +  +L K+       L++T  +  +NDLG+ PLH AL+  KL+ ++ LL+ D D N  +    TPL
Sbjct:  298 GDSPLHLALENGHKEMAELLLRNGANPNL-ANGY--GLTPLHILNMRHNTSDLVKMFFDVNDELNQTLRVDALNDLGDAPLHLALLHGKLMMIQLLLEHDADPNLANAEGSTPL 408
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BLAST of mRNA_M-pyrifera_M_contig74134.17557.1 vs. uniprot
Match: A0A3B6VE03_BRAHW (Ankyrin repeat-containing protein n=18 Tax=Brachyspira TaxID=29521 RepID=A0A3B6VE03_BRAHW)

HSP 1 Score: 51.6 bits (122), Expect = 2.540e-5
Identity = 32/96 (33.33%), Postives = 56/96 (58.33%), Query Frame = 1 
Query:    7 SPLMQAIKYEQTESVKLLFNHHANVDQRAQGFYAGWTPLHFACAQDDFNLFKLVLSKTSDLQVVNDLGENPLHTALIWDKLLYVKPLLKADIDVNT 294
            +PL+QAIKY+QT+ +  L  ++A+++ + +    G+TPL    +  D  + +L++ K +D++  N  G NPL  A+  +    VK LL+   D NT
Sbjct:  130 TPLIQAIKYKQTDIINYLLENNADINLKEE--LTGFTPL--MASFHDITITELLIEKGADIEARNVDGINPLVYAVSLNDEEMVKFLLEKGADANT 221
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BLAST of mRNA_M-pyrifera_M_contig74134.17557.1 vs. uniprot
Match: A0A6P7GRC3_DIAVI (ankyrin repeat and protein kinase domain-containing protein 1-like n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7GRC3_DIAVI)

HSP 1 Score: 50.8 bits (120), Expect = 4.050e-5
Identity = 33/99 (33.33%), Postives = 50/99 (50.51%), Query Frame = 1 
Query:    1 GLSPLMQAIKYEQTESVKLLFNHHANVDQRAQGFYAGWTPLHFACAQDDFNLFKLVLSKTSDLQVVNDLGENPLHTALIWDKLLYVKPLLKADIDVNTQ 297
            G + L  A   +  E VK L  H A+V+  A      W+PLHFA A +D  + +L+    +++Q  ++ G  P+H A     L  VK  L+  IDVN +
Sbjct:   35 GFTALHLATDLKHMEVVKYLLAHGADVN--AIETSERWSPLHFATANNDPEMIRLLTEAGANMQCTSNNGYMPIHAAAREGYLEIVKYFLEKGIDVNVK 131
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BLAST of mRNA_M-pyrifera_M_contig74134.17557.1 vs. uniprot
Match: UPI001EE5C911 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like isoform X1 n=2 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5C911)

HSP 1 Score: 50.4 bits (119), Expect = 6.610e-5
Identity = 29/90 (32.22%), Postives = 51/90 (56.67%), Query Frame = 1 
Query:   55 LLFNHHANVDQRAQGFYAGWTPLHFACAQDDFNLFKLVLSKTSDLQVVNDLGENPLHTALIWDKLLYVKPLLK-ADIDVNTQDNFQKTPL 321
            +L +   ++D R Q   +G TPL  A  +    +F L+++K +DL VV++ G N LH+A +      V  +LK   +D+N++   ++TPL
Sbjct:  345 ILLHDTVDIDGRGQ---SGRTPLEVAACKGHGKIFDLLVTKGADLTVVDNAGNNILHSACLGGHANIVSRVLKLGKVDINSRGQCRRTPL 431
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74134.17557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI0006D4EBC01.380e-731.43ankyrin-3-like n=1 Tax=Halyomorpha halys TaxID=286... [more]
A0A6H5IK59_9HYME7.840e-635.09Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A3B6VE03_BRAHW2.540e-533.33Ankyrin repeat-containing protein n=18 Tax=Brachys... [more]
A0A6P7GRC3_DIAVI4.050e-533.33ankyrin repeat and protein kinase domain-containin... [more]
UPI001EE5C9116.610e-532.22serine/threonine-protein phosphatase 6 regulatory ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74134contigM-pyrifera_M_contig74134:742..1062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816639.3439505-CDS-M-pyrifera_M_contig74134:741..10471622816639.3439505-CDS-M-pyrifera_M_contig74134:741..1047Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74134 742..1047 -
1692278092.5793438-CDS-M-pyrifera_M_contig74134:741..10471692278092.5793438-CDS-M-pyrifera_M_contig74134:741..1047Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74134 742..1047 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816639.3580875-UTR-M-pyrifera_M_contig74134:1047..10621622816639.3580875-UTR-M-pyrifera_M_contig74134:1047..1062Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74134 1048..1062 -
1692278092.6001327-UTR-M-pyrifera_M_contig74134:1047..10621692278092.6001327-UTR-M-pyrifera_M_contig74134:1047..1062Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig74134 1048..1062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74134.17557.1prot_M-pyrifera_M_contig74134.17557.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74134 742..1047 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74134.17557.1

>prot_M-pyrifera_M_contig74134.17557.1 ID=prot_M-pyrifera_M_contig74134.17557.1|Name=mRNA_M-pyrifera_M_contig74134.17557.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
MQAIKYEQTESVKLLFNHHANVDQRAQGFYAGWTPLHFACAQDDFNLFKL
VLSKTSDLQVVNDLGENPLHTALIWDKLLYVKPLLKADIDVNTQDNFQKT
PL
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mRNA from alignment at M-pyrifera_M_contig74134:742..1062-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74134.17557.1 ID=mRNA_M-pyrifera_M_contig74134.17557.1|Name=mRNA_M-pyrifera_M_contig74134.17557.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig74134:742..1062- (Macrocystis pyrifera P11B4 male)
GGCTTGTCCCCTCTGATGCAAGCCATAAAATATGAACAAACCGAGTCAGT
AAAACTATTGTTCAACCACCATGCTAATGTTGACCAAAGAGCCCAGGGTT
TCTATGCAGGCTGGACACCATTACATTTCGCATGCGCTCAAGATGATTTT
AATCTCTTTAAGTTGGTTTTAAGTAAAACGTCTGATCTACAGGTGGTGAA
CGATTTAGGAGAAAACCCATTGCACACCGCACTGATTTGGGACAAACTAT
TGTACGTCAAGCCATTGCTGAAGGCTGATATTGATGTCAATACTCAGGAT
AACTTCCAGAAAACACCGCTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74134:742..1062-

>mRNA_M-pyrifera_M_contig74134.17557.1 ID=mRNA_M-pyrifera_M_contig74134.17557.1|Name=mRNA_M-pyrifera_M_contig74134.17557.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig74134:742..1062- (Macrocystis pyrifera P11B4 male)
ATGCAAGCCATAAAATATGAACAAACCGAGTCAGTAAAACTATTGTTCAA
CCACCATGCTAATGTTGACCAAAGAGCCCAGGGTTTCTATGCAGGCTGGA
CACCATTACATTTCGCATGCGCTCAAGATGATTTTAATCTCTTTAAGTTG
GTTTTAAGTAAAACGTCTGATCTACAGGTGGTGAACGATTTAGGAGAAAA
CCCATTGCACACCGCACTGATTTGGGACAAACTATTGTACGTCAAGCCAT
TGCTGAAGGCTGATATTGATGTCAATACTCAGGATAACTTCCAGAAAACA
CCGCTAATGCAAGCCATAAAATATGAACAAACCGAGTCAGTAAAACTATT
GTTCAACCACCATGCTAATGTTGACCAAAGAGCCCAGGGTTTCTATGCAG
GCTGGACACCATTACATTTCGCATGCGCTCAAGATGATTTTAATCTCTTT
AAGTTGGTTTTAAGTAAAACGTCTGATCTACAGGTGGTGAACGATTTAGG
AGAAAACCCATTGCACACCGCACTGATTTGGGACAAACTATTGTACGTCA
AGCCATTGCTGAAGGCTGATATTGATGTCAATACTCAGGATAACTTCCAG
AAAACACCGCTA
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