mRNA_M-pyrifera_M_contig7411.17550.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7411.17550.1
Unique NamemRNA_M-pyrifera_M_contig7411.17550.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7411.17550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7411contigM-pyrifera_M_contig7411:7448..8090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size643
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7411.17550.1prot_M-pyrifera_M_contig7411.17550.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7411 7729..8052 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816639.0438745-UTR-M-pyrifera_M_contig7411:7447..77281622816639.0438745-UTR-M-pyrifera_M_contig7411:7447..7728Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7411 7448..7728 +
1692278092.4294095-UTR-M-pyrifera_M_contig7411:7447..77281692278092.4294095-UTR-M-pyrifera_M_contig7411:7447..7728Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7411 7448..7728 +
1622816639.068395-UTR-M-pyrifera_M_contig7411:8052..80901622816639.068395-UTR-M-pyrifera_M_contig7411:8052..8090Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7411 8053..8090 +
1692278092.459703-UTR-M-pyrifera_M_contig7411:8052..80901692278092.459703-UTR-M-pyrifera_M_contig7411:8052..8090Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7411 8053..8090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816639.0551147-CDS-M-pyrifera_M_contig7411:7728..80521622816639.0551147-CDS-M-pyrifera_M_contig7411:7728..8052Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7411 7729..8052 +
1692278092.4436398-CDS-M-pyrifera_M_contig7411:7728..80521692278092.4436398-CDS-M-pyrifera_M_contig7411:7728..8052Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7411 7729..8052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7411.17550.1

>prot_M-pyrifera_M_contig7411.17550.1 ID=prot_M-pyrifera_M_contig7411.17550.1|Name=mRNA_M-pyrifera_M_contig7411.17550.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
MQDGTPTCRYMPHHPPTYLPVKRSCYALHGKTYVFGPLSRRAFQKSASRG
TFVCPTILPSIQPRYPRTQHFAFRDPGTLLPAPTSTLPHISGSSSTLPHS
RASSRTM*
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mRNA from alignment at M-pyrifera_M_contig7411:7448..8090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7411.17550.1 ID=mRNA_M-pyrifera_M_contig7411.17550.1|Name=mRNA_M-pyrifera_M_contig7411.17550.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=643bp|location=Sequence derived from alignment at M-pyrifera_M_contig7411:7448..8090+ (Macrocystis pyrifera P11B4 male)
CTCGACCCTCGTTTCATGTCGGAAAGACTCCCATCTGGTAATCATTGAAA
CGTCAAACGTCAGCTAGGACAAGCTAGGACAATTGGCCGCCAATCTAAAT
ACACGGCTACTATTACACCCGGTGGGACGACGAGTACTTCTGTACCATCG
TCTCAACGCCGTAAGGTTACCTTGAGGCCGAGCAGCCACGTTTACCCGCA
CCACAGCACTCTCGGGAATCAAGGGCAGGCGCTCTTGGGAGTCAAGGTGC
AAGCAAGGGCAGAACCACTACATGCCCGTGTATGCAGGACGGAACACCCA
CATGCAGGTACATGCCCCACCACCCTCCAACCTACTTGCCTGTCAAGCGA
AGTTGCTACGCGTTGCACGGCAAAACGTATGTGTTCGGGCCTCTTTCGCG
CCGGGCGTTTCAAAAATCGGCCTCGCGAGGTACGTTTGTCTGTCCAACTA
TTCTCCCCTCAATTCAACCCCGGTATCCACGCACTCAACATTTCGCCTTC
CGTGATCCCGGTACACTCCTCCCCGCGCCGACCAGCACGTTACCGCACAT
TTCAGGATCTTCGAGTACGTTACCGCACAGCCGCGCCTCAAGCAGAACAA
TGTAGTGATGAAACATCCGCGACAACCCACAGATGAAGCGTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7411:7448..8090+

>mRNA_M-pyrifera_M_contig7411.17550.1 ID=mRNA_M-pyrifera_M_contig7411.17550.1|Name=mRNA_M-pyrifera_M_contig7411.17550.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig7411:7448..8090+ (Macrocystis pyrifera P11B4 male)
ATGCAGGACGGAACACCCACATGCAGGTACATGCCCCACCACCCTCCAAC
CTACTTGCCTGTCAAGCGAAGTTGCTACGCGTTGCACGGCAAAACGTATG
TGTTCGGGCCTCTTTCGCGCCGGGCGTTTCAAAAATCGGCCTCGCGAGGT
ACGTTTGTCTGTCCAACTATTCTCCCCTCAATTCAACCCCGGTATCCACG
CACTCAACATTTCGCCTTCCGTGATCCCGGTACACTCCTCCCCGCGCCGA
CCAGCACGTTACCGCACATTTCAGGATCTTCGAGTACGTTACCGCACAGC
CGCGCCTCAAGCAGAACAATGTAGATGCAGGACGGAACACCCACATGCAG
GTACATGCCCCACCACCCTCCAACCTACTTGCCTGTCAAGCGAAGTTGCT
ACGCGTTGCACGGCAAAACGTATGTGTTCGGGCCTCTTTCGCGCCGGGCG
TTTCAAAAATCGGCCTCGCGAGGTACGTTTGTCTGTCCAACTATTCTCCC
CTCAATTCAACCCCGGTATCCACGCACTCAACATTTCGCCTTCCGTGATC
CCGGTACACTCCTCCCCGCGCCGACCAGCACGTTACCGCACATTTCAGGA
TCTTCGAGTACGTTACCGCACAGCCGCGCCTCAAGCAGAACAATGTAG
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