mRNA_M-pyrifera_M_contig74096.17545.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74096.17545.1
Unique NamemRNA_M-pyrifera_M_contig74096.17545.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74096.17545.1 vs. uniprot
Match: A0A812L8W4_9DINO (Glucosidase 2 subunit beta n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812L8W4_9DINO)

HSP 1 Score: 83.2 bits (204), Expect = 5.830e-16
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   61 AAACGNGVFWCGNVGFRALELPSSRVGDGICDCCDGTDERDGVCGNTCEADGAEYRREREREMAGVEEGMGVRQEYVAEG 300
            AAAC NG F+C N GFR + LPSSRVGDG+CDCCDG+DE  G C +TC+  GAE+R+     +   E G   +  ++  G
Sbjct:   32 AAACANGKFYCVNKGFRGVYLPSSRVGDGVCDCCDGSDEP-GTCADTCDEAGAEWRKAEAERIQRAEAGAKAKVAFLEAG 110          
BLAST of mRNA_M-pyrifera_M_contig74096.17545.1 vs. uniprot
Match: A0A2A9NRM0_9AGAR (Glucosidase 2 subunit beta n=1 Tax=Amanita thiersii Skay4041 TaxID=703135 RepID=A0A2A9NRM0_9AGAR)

HSP 1 Score: 82.8 bits (203), Expect = 1.400e-15
Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   64 AACGNGVFWCGNVGFRALELPSSRVGDGICD--CCDGTDERDGVCGNTCEADGAEYRREREREMAGVEEGMGVRQEYVAEGSRGLDELKEE 330
            +AC NGVF+C N G     +PSSRV DG+C+  CCDG+DER GVC NTC+  G  +R++RE E+     G  +R  Y+A   +    L++E
Sbjct:   71 SACANGVFYCHNTGHIGASIPSSRVNDGLCEPECCDGSDERPGVCRNTCKEIGDAFRKKREEELRIQRTGSKIRSTYIAFAQKEKKRLEKE 161          
BLAST of mRNA_M-pyrifera_M_contig74096.17545.1 vs. uniprot
Match: A0A2P6NAV5_9EUKA (Glucosidase 2 subunit beta n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NAV5_9EUKA)

HSP 1 Score: 80.9 bits (198), Expect = 6.070e-15
Identity = 40/89 (44.94%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   67 ACGNGVFWCGNVGFRALELPSSRVGDGICDCCDGTDER---DGVCGNTCEADGAEYRREREREMAGVEEGMGVRQEYVAEGSRGLDELK 324
            AC NG F+C N+G     + SSRVGDGICDCCDG+DE+   +  C NTC+AD  E  + R++E+    +G+ +++EY+A+  R L E +
Sbjct:  103 ACPNGKFYCRNIGSVGKTVFSSRVGDGICDCCDGSDEKLNPNSKCKNTCQADAREANKGRQQELDITLKGLSIKKEYIAKAERELREKR 191          
BLAST of mRNA_M-pyrifera_M_contig74096.17545.1 vs. uniprot
Match: A0A4Y7T5I9_9AGAR (Glucosidase 2 subunit beta n=1 Tax=Coprinellus micaceus TaxID=71717 RepID=A0A4Y7T5I9_9AGAR)

HSP 1 Score: 80.9 bits (198), Expect = 6.510e-15
Identity = 41/91 (45.05%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   64 AACGNGVFWCGNVGFRALELPSSRVGDGIC--DCCDGTDERDGVCGNTCEADGAEYRREREREMAGVEEGMGVRQEYVAEGSRGLDELKEE 330
            +AC N  FWC N G     +PSSRVGDG+C  DCCDG+DE+ GVC N C+  G  YR  R+ E+   + G  +R  Y+A   +    L+EE
Sbjct:   73 SACSNSQFWCQNAGHIGSYIPSSRVGDGLCEADCCDGSDEQPGVCPNRCKEIGEAYRANRDAELKIQKTGSKIRSTYIAFAHKEQKRLQEE 163          
BLAST of mRNA_M-pyrifera_M_contig74096.17545.1 vs. uniprot
Match: A0A4Q2DHE9_9AGAR (Glucosidase 2 subunit beta n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2DHE9_9AGAR)

HSP 1 Score: 78.6 bits (192), Expect = 4.160e-14
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   64 AACGNGVFWCGNVGFRALELPSSRVGDGIC--DCCDGTDERDGVCGNTCEADGAEYRREREREMAGVEEGMGVRQEYVA 294
            +AC N  FWC N G     +PSSRVGDG+C  DCCDG+DE  GVC ++C+  G  YR++RE E+     G  +R  Y+A
Sbjct:   72 SACSNSRFWCQNNGHIGAYIPSSRVGDGLCEPDCCDGSDELSGVCKDSCKEVGEAYRKKREAELKIQRTGAKIRSTYIA 150          
BLAST of mRNA_M-pyrifera_M_contig74096.17545.1 vs. uniprot
Match: A0A0C2WZT1_AMAMK (Glucosidase 2 subunit beta n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WZT1_AMAMK)

HSP 1 Score: 78.6 bits (192), Expect = 4.190e-14
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   64 AACGNGVFWCGNVGFRALELPSSRVGDGICD--CCDGTDERDGVCGNTCEADGAEYRREREREMAGVEEGMGVRQEYVA 294
            +AC N VF+C N G     +PSS V DG+C+  CCDG+DER GVC N C+  G EYR++R+ E+   + G  +R  Y+A
Sbjct:   71 SACTNSVFYCRNTGHIGATIPSSHVNDGLCEPQCCDGSDERPGVCPNDCKEVGEEYRKQRDAELRIQKTGAKIRSSYIA 149          
BLAST of mRNA_M-pyrifera_M_contig74096.17545.1 vs. uniprot
Match: A0A0L0T3K5_ALLM3 (Glucosidase 2 subunit beta n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0T3K5_ALLM3)

HSP 1 Score: 76.3 bits (186), Expect = 2.470e-13
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 1
Query:   64 AACGNGVFWCGNVGFRALELPSSRVGDGICD--CCDGTDERDG--VCGNTCEADGAEYRREREREMAGVEEGMGVRQEYVAEGSRGLDELKEE 330
            AAC NG F C NVG R +++PSSR+ DG+C+  CCDG+DE +G   C NTC   GA +R+++E     + EG+  ++EY     +G  + +++
Sbjct:  116 AACNNGRFHCANVGHRPVDIPSSRINDGVCEPECCDGSDEYNGKITCPNTCAETGAAWRKQQEDAARKLAEGLRKKEEYRQRAIKGKAQAEQD 208          
BLAST of mRNA_M-pyrifera_M_contig74096.17545.1 vs. uniprot
Match: A0A8H6WZT0_9AGAR (Glucosidase 2 subunit beta n=1 Tax=Mycena kentingensis (nom. inval.) TaxID=1325293 RepID=A0A8H6WZT0_9AGAR)

HSP 1 Score: 75.5 bits (184), Expect = 4.970e-13
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   64 AACGNGVFWCGNVGFRALELPSSRVGDGICD--CCDGTDERDGVCGNTCEADGAEYRREREREMAGVEEGMGVRQEYV 291
            +AC N  F+C N G     +PSSRV DG+C+  CCDG+DER GVC N C+  G  YR++R+ E+   + G  +R  Y+
Sbjct:   71 SACANSTFYCQNAGHIGASIPSSRVNDGLCEPTCCDGSDERPGVCPNACKEIGEAYRKKRDAELKLRKTGAKIRASYI 148          
BLAST of mRNA_M-pyrifera_M_contig74096.17545.1 vs. uniprot
Match: A0A067JC22_JATCU (PRKCSH-like domain-containing protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067JC22_JATCU)

HSP 1 Score: 72.4 bits (176), Expect = 5.460e-13
Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = 1
Query:    1 FFIPIEATFSHSLPLFLISVAAACGNGVFWCGNVGFRALELPSSRVGDGICDCCDGTDERDGV--CGNTCEADGAEYRREREREMAGVEEGMGVRQEYVAEGSRGL 312
            FF P+E  F  +  L   +  +AC  G F+C NVG     LPSSRV DGICDCCDG+DE DG   C NTC   G   R + ++++   ++G+ +R++ + +  + L
Sbjct:    4 FFTPVEV-FVDAYNLNFYAGTSACPQGKFYCLNVGHTPTYLPSSRVNDGICDCCDGSDEYDGKVNCSNTCWKAGKVTRDKLQKKIDMYKQGITLRKKEIEQAKQAL 108          
BLAST of mRNA_M-pyrifera_M_contig74096.17545.1 vs. uniprot
Match: A0A0C3KP96_9AGAM (PRKCSH-like domain-containing protein (Fragment) n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3KP96_9AGAM)

HSP 1 Score: 73.6 bits (179), Expect = 8.240e-13
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   64 AACGNGVFWCGNVGFRALELPSSRVGDGICD--CCDGTDERDGVCGNTCEADGAEYRREREREMAGVEEGMGVRQEYVA 294
            +AC NG F C N G    ++ SSRVGDG+C+  CCDG+DE +GVC N CEA G++Y+ E+       + G  +R  +VA
Sbjct:   76 SACANGTFHCINAGHIGADIRSSRVGDGLCEPECCDGSDEAEGVCENKCEAIGSQYKAEQAAIQKARKTGAKIRSTFVA 154          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74096.17545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812L8W4_9DINO5.830e-1650.00Glucosidase 2 subunit beta n=1 Tax=Symbiodinium sp... [more]
A0A2A9NRM0_9AGAR1.400e-1545.05Glucosidase 2 subunit beta n=1 Tax=Amanita thiersi... [more]
A0A2P6NAV5_9EUKA6.070e-1544.94Glucosidase 2 subunit beta n=1 Tax=Planoprotosteli... [more]
A0A4Y7T5I9_9AGAR6.510e-1545.05Glucosidase 2 subunit beta n=1 Tax=Coprinellus mic... [more]
A0A4Q2DHE9_9AGAR4.160e-1448.10Glucosidase 2 subunit beta n=1 Tax=Candolleomyces ... [more]
A0A0C2WZT1_AMAMK4.190e-1446.84Glucosidase 2 subunit beta n=1 Tax=Amanita muscari... [more]
A0A0L0T3K5_ALLM32.470e-1340.86Glucosidase 2 subunit beta n=1 Tax=Allomyces macro... [more]
A0A8H6WZT0_9AGAR4.970e-1344.87Glucosidase 2 subunit beta n=1 Tax=Mycena kentinge... [more]
A0A067JC22_JATCU5.460e-1339.62PRKCSH-like domain-containing protein n=1 Tax=Jatr... [more]
A0A0C3KP96_9AGAM8.240e-1345.57PRKCSH-like domain-containing protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74096contigM-pyrifera_M_contig74096:142..597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score82.4
Seed ortholog evalue2e-13
Seed eggNOG ortholog78898.MVEG_02180T0
KEGG koko:K08288
KEGG Pathwayko04141,map04141
Hectar predicted targeting categorysignal peptide
GOsGO:0000271,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005975,GO:0005976,GO:0006491,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009987,GO:0012505,GO:0016051,GO:0017177,GO:0019538,GO:0031974,GO:0032991,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:1901135,GO:1901564,GO:1901576
EggNOG free text desc.Low-density lipoprotein receptor domain class A
EggNOG OGs1GTXD@112252,38EUH@33154,3NY9J@4751,KOG2397@1,KOG2397@2759
COG Functional cat.T
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04091
Exons1
Model size456
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816638.8615654-CDS-M-pyrifera_M_contig74096:141..5971622816638.8615654-CDS-M-pyrifera_M_contig74096:141..597Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74096 142..597 -
1692278092.3439126-CDS-M-pyrifera_M_contig74096:141..5971692278092.3439126-CDS-M-pyrifera_M_contig74096:141..597Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74096 142..597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74096.17545.1prot_M-pyrifera_M_contig74096.17545.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74096 142..597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74096.17545.1

>prot_M-pyrifera_M_contig74096.17545.1 ID=prot_M-pyrifera_M_contig74096.17545.1|Name=mRNA_M-pyrifera_M_contig74096.17545.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
FFIPIEATFSHSLPLFLISVAAACGNGVFWCGNVGFRALELPSSRVGDGI
CDCCDGTDERDGVCGNTCEADGAEYRREREREMAGVEEGMGVRQEYVAEG
SRGLDELKEEVEKATEEADRLKAGVEDKRKEVGELEKVVEEEKRVEEEKR
EE
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mRNA from alignment at M-pyrifera_M_contig74096:142..597-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74096.17545.1 ID=mRNA_M-pyrifera_M_contig74096.17545.1|Name=mRNA_M-pyrifera_M_contig74096.17545.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig74096:142..597- (Macrocystis pyrifera P11B4 male)
TTTTTCATACCCATCGAAGCCACATTTTCCCATTCTCTCCCCCTTTTTCT TATCTCTGTTGCAGCTGCTTGTGGGAATGGGGTGTTTTGGTGTGGGAATG TTGGTTTCCGTGCTTTGGAGTTGCCAAGTAGTCGCGTAGGGGATGGGATT TGCGATTGCTGCGACGGAACTGACGAAAGGGACGGAGTGTGTGGCAACAC GTGTGAGGCGGATGGTGCGGAGTACAGGAGGGAGCGGGAGAGGGAGATGG CAGGGGTGGAGGAAGGGATGGGAGTGCGTCAAGAGTATGTGGCGGAAGGG AGTCGAGGCCTTGATGAGCTGAAGGAGGAAGTGGAGAAGGCCACTGAGGA AGCAGATCGCTTGAAGGCAGGGGTGGAAGATAAGCGGAAGGAAGTTGGGG AATTGGAGAAGGTGGTGGAGGAGGAGAAGAGAGTGGAGGAGGAAAAGAGG GAAGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74096:142..597-

>mRNA_M-pyrifera_M_contig74096.17545.1 ID=mRNA_M-pyrifera_M_contig74096.17545.1|Name=mRNA_M-pyrifera_M_contig74096.17545.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig74096:142..597- (Macrocystis pyrifera P11B4 male)
TTTTTCATACCCATCGAAGCCACATTTTCCCATTCTCTCCCCCTTTTTCT
TATCTCTGTTGCAGCTGCTTGTGGGAATGGGGTGTTTTGGTGTGGGAATG
TTGGTTTCCGTGCTTTGGAGTTGCCAAGTAGTCGCGTAGGGGATGGGATT
TGCGATTGCTGCGACGGAACTGACGAAAGGGACGGAGTGTGTGGCAACAC
GTGTGAGGCGGATGGTGCGGAGTACAGGAGGGAGCGGGAGAGGGAGATGG
CAGGGGTGGAGGAAGGGATGGGAGTGCGTCAAGAGTATGTGGCGGAAGGG
AGTCGAGGCCTTGATGAGCTGAAGGAGGAAGTGGAGAAGGCCACTGAGGA
AGCAGATCGCTTGAAGGCAGGGGTGGAAGATAAGCGGAAGGAAGTTGGGG
AATTGGAGAAGGTGGTGGAGGAGGAGAAGAGAGTGGAGGAGGAAAAGAGG
GAAGAATTTTTCATACCCATCGAAGCCACATTTTCCCATTCTCTCCCCCT
TTTTCTTATCTCTGTTGCAGCTGCTTGTGGGAATGGGGTGTTTTGGTGTG
GGAATGTTGGTTTCCGTGCTTTGGAGTTGCCAAGTAGTCGCGTAGGGGAT
GGGATTTGCGATTGCTGCGACGGAACTGACGAAAGGGACGGAGTGTGTGG
CAACACGTGTGAGGCGGATGGTGCGGAGTACAGGAGGGAGCGGGAGAGGG
AGATGGCAGGGGTGGAGGAAGGGATGGGAGTGCGTCAAGAGTATGTGGCG
GAAGGGAGTCGAGGCCTTGATGAGCTGAAGGAGGAAGTGGAGAAGGCCAC
TGAGGAAGCAGATCGCTTGAAGGCAGGGGTGGAAGATAAGCGGAAGGAAG
TTGGGGAATTGGAGAAGGTGGTGGAGGAGGAGAAGAGAGTGGAGGAGGAA
AAGAGGGAAGAA
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