mRNA_M-pyrifera_M_contig7407.17539.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7407.17539.1
Unique NamemRNA_M-pyrifera_M_contig7407.17539.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7407.17539.1 vs. uniprot
Match: A0A6H5JYC7_9PHAE (Metallophos domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC7_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 7.750e-68
Identity = 102/126 (80.95%), Postives = 110/126 (87.30%), Query Frame = 2
Query:    2 LRFPSMGCMVVHAGLVPGVPLESQDAEAMSSMRNVVEVGADGGYEARSYTTEGVAWAKAWKGPEHVYFGHDAKRGFQKEAFATGLDTGCVYGRSLTAVVLPGRRVVCVPAEATWSEPGGGKKKGSG 379
            L FPS+GC++VHAGLVPGVPL  QDAEAMS MRNVVE+   GGYE R+   +G+AWAKAWKGPEHVYFGHDAKRGFQKEAFATGLDTGCVYGRSLTAVVLPGRRVVCVPAEA WS PGGG  K +G
Sbjct:  201 LSFPSLGCIIVHAGLVPGVPLNGQDAEAMSCMRNVVEMEGGGGYEPRTLPDQGLAWAKAWKGPEHVYFGHDAKRGFQKEAFATGLDTGCVYGRSLTAVVLPGRRVVCVPAEAMWSAPGGGNGKKAG 326          
BLAST of mRNA_M-pyrifera_M_contig7407.17539.1 vs. uniprot
Match: D7FQU8_ECTSI (Putative bis(5\'-nucleosyl)-tetraphosphatase, symmetrical n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQU8_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 6.660e-52
Identity = 82/100 (82.00%), Postives = 86/100 (86.00%), Query Frame = 2
Query:   86 MSSMRNVVEVGADGGYEARSYTTEGVAWAKAWKGPEHVYFGHDAKRGFQKEAFATGLDTGCVYGRSLTAVVLPGRRVVCVPAEATWSEPGGG---KKKGS 376
            MS MRNVVE+   GGYE R+   +G+AWAKAWKGPEHVYFGHDAKRGFQKEAFATGLDTGCVYGRSLTAVVLPGRRVVCVPAEA WS PGGG   KK GS
Sbjct:    1 MSCMRNVVEIEGGGGYEPRTLPDQGLAWAKAWKGPEHVYFGHDAKRGFQKEAFATGLDTGCVYGRSLTAVVLPGRRVVCVPAEAMWSAPGGGNGKKKAGS 100          
BLAST of mRNA_M-pyrifera_M_contig7407.17539.1 vs. uniprot
Match: A0A7S2XZH9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZH9_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.170e-33
Identity = 67/121 (55.37%), Postives = 79/121 (65.29%), Query Frame = 2
Query:    2 LRFPSMGCMVVHAGLVPGVPLESQDAEAMSSMRNVVEVGADGGYEARSYTTEGVAWAKAWKGPEHVYFGHDAKRGFQKEAFATGLDTGCVYGRSLTAVVLPGRRVVCV----PAEATWSEP 352
            +  P    +VVHAGLVPGV LE Q+   M +MRN++    D  +EA    TEGVAWA AW+GPEHVYFGHDAKRG Q+  FATGLDTGC  G  LTA +LPG  +V V    PAE   + P
Sbjct:  123 ISLPDRNALVVHAGLVPGVSLEDQNLVEMVTMRNLLR-SDDNSWEALERPTEGVAWASAWEGPEHVYFGHDAKRGLQQWRFATGLDTGCCKGLHLTACILPGAEIVSVAAMTPAEDRATSP 242          
BLAST of mRNA_M-pyrifera_M_contig7407.17539.1 vs. uniprot
Match: A0A8K1FHR1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHR1_PYTOL)

HSP 1 Score: 123 bits (309), Expect = 2.300e-32
Identity = 60/120 (50.00%), Postives = 76/120 (63.33%), Query Frame = 2
Query:    2 LRFPSMGCMVVHAGLVPGVPLESQDAEAMSSMRNVVEVGAD---GGYEARSYTTEGVAWAKAWKGPEHVYFGHDAKRGFQKEAFATGLDTGCVYGRSLTAVVLPGRRVVCVPAEATWSEP 352
            +  P+   M+VHAG+ PGV LE Q    M  MR +     +     +E +   +E V WA  WKGP+H+YFGHDAK G Q+EAFATGLDTGC YGR LTA++LP R +V V A A +S P
Sbjct:  136 ISLPAQNAMIVHAGIKPGVALEGQHPIDMYKMRFLEYESTNEEPAAFEVKPSDSEVVQWATQWKGPQHIYFGHDAKAGLQQEAFATGLDTGCCYGRQLTAIILPTRELVAVKARAQYSAP 255          
BLAST of mRNA_M-pyrifera_M_contig7407.17539.1 vs. uniprot
Match: A0A0F6W3S6_9DELT (Bis(5'-nucleosyl)-tetraphosphatase n=2 Tax=Sandaracinus amylolyticus TaxID=927083 RepID=A0A0F6W3S6_9DELT)

HSP 1 Score: 119 bits (299), Expect = 4.160e-31
Identity = 62/118 (52.54%), Postives = 72/118 (61.02%), Query Frame = 2
Query:    2 LRFPSMGCMVVHAGLVPGVPLESQDAEAMSSMRNVVEVGADGGYEARSYTTEGVAWAKAWKGPEHVYFGHDAKRGFQKEAFATGLDTGCVYGRSLTAVVLPGRRVVCVPAEATWSEPG 355
            +  P    +VVHAGLVPGV L  Q  E M +MR + E G      A     EG  WA+ W GP HVYFGHDA  G Q+  FATGLDTGCVYG  LTA VLP R +V V A+  ++EPG
Sbjct:  106 IALPDHRALVVHAGLVPGVSLARQKPEDMLTMRAIREDGT-----ASKRLEEGTPWARLWVGPPHVYFGHDAVTGLQQHPFATGLDTGCVYGGRLTACVLPARELVSVKAKRVYAEPG 218          
BLAST of mRNA_M-pyrifera_M_contig7407.17539.1 vs. uniprot
Match: A0A1S3K9H2_LINUN (uncharacterized protein LOC106179988 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3K9H2_LINUN)

HSP 1 Score: 120 bits (301), Expect = 7.680e-31
Identity = 58/120 (48.33%), Postives = 78/120 (65.00%), Query Frame = 2
Query:    2 LRFPSMGCMVVHAGLVPGVPLESQDAEAMSSMRNVVEVGADGGYEARSYTTEGVAWAKAWKGPEHVYFGHDAKRGFQKEAFATGLDTGCVYGRSLTAVVL--PG-RRVVCVPAEATWSEP 352
            +  PS+  +VVHAG+VPG+PL  Q    M++MRN++ +  +  +E   Y  +GVAW   WKGP  +Y+GHDAKRG Q+  FA GLDTGCVYG+ LT V +  PG RR V V A+  +  P
Sbjct:  169 ISIPSLKSLVVHAGIVPGIPLAKQQPIHMTTMRNIISLN-NNQFEISKYEKDGVAWGSLWKGPNCIYYGHDAKRGLQEHPFAVGLDTGCVYGKKLTGVFIHSPGTRRYVSVDAQTVYRAP 287          
BLAST of mRNA_M-pyrifera_M_contig7407.17539.1 vs. uniprot
Match: A0A661NE82_9DELT (Metallophosphatase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661NE82_9DELT)

HSP 1 Score: 118 bits (296), Expect = 9.850e-31
Identity = 60/105 (57.14%), Postives = 71/105 (67.62%), Query Frame = 2
Query:   41 GLVPGVPLESQDAEAMSSMRNVVEVGADGGYEARSYTTEGVAWAKAWKGPEHVYFGHDAKRGFQKEAFATGLDTGCVYGRSLTAVVLPGRRVVCVPAEATWSEPG 355
            GL+PGVPLE Q  + + SMRN+     D G EA      GV WA  ++GPEHV+FGHDA RG Q+  FATGLDTGCVYG  LTA++LP R +V VPAE  W  PG
Sbjct:  125 GLIPGVPLEEQTPKNLISMRNI---DLDRG-EATKRIDRGVPWASLYEGPEHVFFGHDAVRGLQEHPFATGLDTGCVYGGELTAMLLPERELVSVPAERVWQAPG 225          
BLAST of mRNA_M-pyrifera_M_contig7407.17539.1 vs. uniprot
Match: A0A061IUG0_TRYRA (Serine/threonine protein kinase n=1 Tax=Trypanosoma rangeli SC58 TaxID=429131 RepID=A0A061IUG0_TRYRA)

HSP 1 Score: 118 bits (296), Expect = 1.420e-30
Identity = 60/109 (55.05%), Postives = 74/109 (67.89%), Query Frame = 2
Query:    2 LRFPSMGCMVVHAGLVPGVPLESQDAEAMSSMRNVVEVGADGGYEARSYTTEGVAWAKAWKGPEHVYFGHDAKRGFQKEAFATGLDTGCVYGRSLTAVVLPGRRVVCVP 328
            LR P+   +VVHAGL    PLE Q  + +++MRN++  G  G Y A   TTEGV WA  W+GPE V FGHDA+RG Q+ A+A GLDT CVYG  LTAVV PG R++ VP
Sbjct:  127 LRIPAHKLLVVHAGLHVQFPLELQRVKDVTTMRNLIVKGG-GPYIASEDTTEGVPWASLWRGPEKVIFGHDARRGLQRHAYAIGLDTRCVYGGELTAVVYPGERLISVP 234          
BLAST of mRNA_M-pyrifera_M_contig7407.17539.1 vs. uniprot
Match: UPI0006B0D630 (uncharacterized protein LOC106461977 n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0D630)

HSP 1 Score: 119 bits (298), Expect = 1.520e-30
Identity = 61/124 (49.19%), Postives = 79/124 (63.71%), Query Frame = 2
Query:    2 LRFPSMGCMVVHAGLVPGVPLESQDAEAMSSMRNVV--EVGADGGYEARSYTTEGVAWAKAWKGPEHVYFGHDAKRGFQKEAFATGLDTGCVYGRSLTAVVLPGRR---VVCVPAEATWSEPGG 358
            +  PS+  +VVHAGLVPG+P+E QD   M SMRN+   +   +GG +A +   EG  W   W GPEHVYFGHDA+R  Q  ++ATGLDTGCVYG+ LT V + G R    V V A+  + +P G
Sbjct:  153 ITLPSLNVIVVHAGLVPGLPMERQDPRHMVSMRNLTIKDYFWEGGIQATNSNQEGEPWGSLWPGPEHVYFGHDARRLLQLYSYATGLDTGCVYGKELTGVFIAGPRKGTFVSVTAQHMYEKPKG 276          
BLAST of mRNA_M-pyrifera_M_contig7407.17539.1 vs. uniprot
Match: UPI0014580908 (bis(5'-nucleosyl)-tetraphosphatase PrpE [asymmetrical]-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014580908)

HSP 1 Score: 117 bits (293), Expect = 7.240e-30
Identity = 60/118 (50.85%), Postives = 74/118 (62.71%), Query Frame = 2
Query:    2 LRFPSMGCMVVHAGLVPGVPLESQDAEAMSSMRNVVEVGADGGYEARSYTTEGVAWAKAWKGPEHVYFGHDAKRGFQKEAFATGLDTGCVYGRSLTAVVLPG-RRVVCVPAEATWSEP 352
            +  PS   +VVHAGLVPG+PLE+QD   M  MRNV E   DG  +A      G  WA  W GPEHVYFGHDA RGFQ   FATGLDTGC+YG+ LT + + G  + + V ++  +  P
Sbjct:  152 ISIPSCNALVVHAGLVPGIPLENQDLTDMIVMRNV-ERKEDGSLKASEAHFVGEQWASKWPGPEHVYFGHDAVRGFQNFPFATGLDTGCLYGKELTGLFINGCNKRISVKSQKVYRPP 268          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7407.17539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYC7_9PHAE7.750e-6880.95Metallophos domain-containing protein n=1 Tax=Ecto... [more]
D7FQU8_ECTSI6.660e-5282.00Putative bis(5\'-nucleosyl)-tetraphosphatase, symm... [more]
A0A7S2XZH9_9STRA1.170e-3355.37Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8K1FHR1_PYTOL2.300e-3250.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0F6W3S6_9DELT4.160e-3152.54Bis(5'-nucleosyl)-tetraphosphatase n=2 Tax=Sandara... [more]
A0A1S3K9H2_LINUN7.680e-3148.33uncharacterized protein LOC106179988 n=1 Tax=Lingu... [more]
A0A661NE82_9DELT9.850e-3157.14Metallophosphatase n=1 Tax=Deltaproteobacteria bac... [more]
A0A061IUG0_TRYRA1.420e-3055.05Serine/threonine protein kinase n=1 Tax=Trypanosom... [more]
UPI0006B0D6301.520e-3049.19uncharacterized protein LOC106461977 n=1 Tax=Limul... [more]
UPI00145809087.240e-3050.85bis(5'-nucleosyl)-tetraphosphatase PrpE [asymmetri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7407contigM-pyrifera_M_contig7407:3061..3924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue2.2e-23
Seed eggNOG ortholog2903.EOD21704
KEGG rclassRC00002
KEGG koko:K01525,ko:K22132
KEGG ReactionR00125
KEGG Pathwayko00230,map00230
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0031090,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805,GO:0098852
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG0639@1,KOG0371@2759
Ec32 ortholog descriptionMetallo-dependent phosphatase-like
Ec32 orthologEc-16_000830.1
EC3.6.1.41
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Exons2
Model size382
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7407.17539.1prot_M-pyrifera_M_contig7407.17539.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7407 3077..3924 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816638.5268133-UTR-M-pyrifera_M_contig7407:3060..30761622816638.5268133-UTR-M-pyrifera_M_contig7407:3060..3076Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7407 3061..3076 +
1692278092.1534336-UTR-M-pyrifera_M_contig7407:3060..30761692278092.1534336-UTR-M-pyrifera_M_contig7407:3060..3076Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7407 3061..3076 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816638.5402822-CDS-M-pyrifera_M_contig7407:3076..32181622816638.5402822-CDS-M-pyrifera_M_contig7407:3076..3218Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7407 3077..3218 +
1692278092.170148-CDS-M-pyrifera_M_contig7407:3076..32181692278092.170148-CDS-M-pyrifera_M_contig7407:3076..3218Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7407 3077..3218 +
1622816638.551399-CDS-M-pyrifera_M_contig7407:3700..39241622816638.551399-CDS-M-pyrifera_M_contig7407:3700..3924Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7407 3701..3924 +
1692278092.179217-CDS-M-pyrifera_M_contig7407:3700..39241692278092.179217-CDS-M-pyrifera_M_contig7407:3700..3924Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7407 3701..3924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7407.17539.1

>prot_M-pyrifera_M_contig7407.17539.1 ID=prot_M-pyrifera_M_contig7407.17539.1|Name=mRNA_M-pyrifera_M_contig7407.17539.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
MGCMVVHAGLVPGVPLESQDAEAMSSMRNVVEVGADGGYEARSYTTEGVA
WAKAWKGPEHVYFGHDAKRGFQKEAFATGLDTGCVYGRSLTAVVLPGRRV
VCVPAEATWSEPGGGKKKGSG*
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mRNA from alignment at M-pyrifera_M_contig7407:3061..3924+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7407.17539.1 ID=mRNA_M-pyrifera_M_contig7407.17539.1|Name=mRNA_M-pyrifera_M_contig7407.17539.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig7407:3061..3924+ (Macrocystis pyrifera P11B4 male)
CTTGAGGTTCCCCTCGATGGGCTGCATGGTCGTGCACGCGGGGCTCGTGC CGGGAGTGCCGCTGGAGAGTCAAGATGCCGAGGCGATGTCGTCCATGCGA AACGTCGTGGAGGTGGGGGCTGACGGCGGATATGAGGCCCGAAGTTACAC CACCGAAGGTACCCGGCCGTTGGACGCGATACGATTTTGTTGAAATGTGG TTCCGCTACGCCAGTCGACCTCGGATTGCGCTTTTGTTATATACCTGGTA TGCAACATGGCCACTGAACTACGCATTATGTCAGCGCTGACTTATACCTC AGTGGTTATAGTGCATACCAGGTACCATGGTATATAACAACGTGCTTGTT GTGTATCTTTGGTGCTGCGGTAGAAGGTTGATCGTCTAAATACGGGCTGT AAAATATTGGTCGTCTAAATACGGCATCTCCGAGGCTCGGCTCTAGGCGA GGGGGTTTGATTGAGGATTTTAGGTTGGGTTTGTTCCAATGCAAGTTCAA AAGCAATATGTTTCGATACCTTTCTCTGGGAGTTGGCGTGCAATACGTAT TCATGTCTGATTCAGCCATCGTCGACACTTACTTCCCTCTATGTCCCCCC CCTCCGCGCGCGTGCGGACTAATACTTGTCGGGCGCCTAGGTGTTGCATG GGCTAAAGCGTGGAAGGGGCCAGAACATGTCTACTTCGGGCACGACGCGA AGCGAGGGTTTCAGAAAGAGGCATTTGCGACGGGTTTAGATACCGGCTGC GTGTACGGGCGGTCGTTGACGGCTGTCGTTTTGCCGGGACGAAGGGTCGT GTGCGTTCCTGCCGAAGCCACGTGGTCGGAGCCCGGAGGGGGCAAGAAGA AGGGAAGCGGTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7407:3061..3924+

>mRNA_M-pyrifera_M_contig7407.17539.1 ID=mRNA_M-pyrifera_M_contig7407.17539.1|Name=mRNA_M-pyrifera_M_contig7407.17539.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig7407:3061..3924+ (Macrocystis pyrifera P11B4 male)
ATGGGCTGCATGGTCGTGCACGCGGGGCTCGTGCCGGGAGTGCCGCTGGA
GAGTCAAGATGCCGAGGCGATGTCGTCCATGCGAAACGTCGTGGAGGTGG
GGGCTGACGGCGGATATGAGGCCCGAAGTTACACCACCGAAGATGGGCTG
CATGGTCGTGCACGCGGGGCTCGTGCCGGGAGTGCCGCTGGAGAGTCAAG
ATGCCGAGGCGATGTCGTCCATGCGAAACGTCGTGGAGGTGGGGGCTGAC
GGCGGATATGAGGCCCGAAGTTACACCACCGAAGGTGTTGCATGGGCTAA
AGCGTGGAAGGGGCCAGAACATGTCTACTTCGGGCACGACGCGAAGCGAG
GGTTTCAGAAAGAGGCATTTGCGACGGGTTTAGATACCGGCTGCGTGTAC
GGGCGGTCGTTGACGGCTGTCGTTTTGCCGGGACGAAGGGTCGTGTGCGT
TCCTGCCGAAGCCACGTGGTCGGAGCCCGGAGGGGGCAAGAAGAAGGGAA
GCGGTTAAGTGTTGCATGGGCTAAAGCGTGGAAGGGGCCAGAACATGTCT
ACTTCGGGCACGACGCGAAGCGAGGGTTTCAGAAAGAGGCATTTGCGACG
GGTTTAGATACCGGCTGCGTGTACGGGCGGTCGTTGACGGCTGTCGTTTT
GCCGGGACGAAGGGTCGTGTGCGTTCCTGCCGAAGCCACGTGGTCGGAGC
CCGGAGGGGGCAAGAAGAAGGGAAGCGGTTAA
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