mRNA_M-pyrifera_M_contig74059.17534.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74059.17534.1
Unique NamemRNA_M-pyrifera_M_contig74059.17534.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74059.17534.1 vs. uniprot
Match: A0A812IIB8_9DINO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812IIB8_9DINO)

HSP 1 Score: 120 bits (300), Expect = 7.270e-31
Identity = 69/143 (48.25%), Postives = 93/143 (65.03%), Query Frame = 1
Query:   10 LSVASRVWMVLCVCWYSEESRQNPFYALMVMSWGLVEVPRYLFLLVNLLSPNNVPYPLLWLRYSLFAILYPTGISGEVGCSIYSLWTYLFTSANPPPLTLLLPNQFNLLY-HHGLVIVGILVAYIPLSPVMYSHMVKQRAKKL 435
            L V SR+ ++  V  ++  ++  P + LM  SW  VEVPRYLFLL+NL   N VPYPLLWLRYSLF +LYPTGISGEV    +S+W+ L        L++ LPN +N+L+ +HG +   +L  Y P S  M+ HM++QR KKL
Sbjct:   84 LQVLSRLIVLWGVTHFAPAAQTGPCFTLMAASWSAVEVPRYLFLLLNLW--NAVPYPLLWLRYSLFMVLYPTGISGEV----WSIWSALPFIKATGTLSVALPNAYNMLFDYHGFLWFTLLAIYPPGSVHMFGHMLRQRTKKL 220          
BLAST of mRNA_M-pyrifera_M_contig74059.17534.1 vs. uniprot
Match: A0A7S3HHK7_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HHK7_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.390e-29
Identity = 67/144 (46.53%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    7 FLSVASRVWMVLCVCWYSEESRQNPFYALMVMSWGLVEVPRYLFLLVNLLSPNNVPYPLLWLRYSLFAILYPTGISGEVGCSIYSLWTYLFTSANPPPLTLLLPNQFNLLYH--HGLVIVGILVAYIPLSPVMYSHMVKQRAKK 432
            F+ V SRVW +  +   ++ ++   F+ L   SWGLVEVPRYLF  +NLL  N VPYPL WLRYSLFA+LYPTGI+GE+G ++Y  + +  T A         P Q   L+   H + IV + + YIP SP M+ HMVK R+K+
Sbjct:   75 FMQVFSRVWTLWAIMDTTDAAQTTVFFVLACTSWGLVEVPRYLFYALNLL--NAVPYPLFWLRYSLFAVLYPTGITGELG-TMYHAFNFFITQA---------PIQDQPLFRQIHLVSIVLVAITYIPGSPKMFGHMVKTRSKQ 206          
BLAST of mRNA_M-pyrifera_M_contig74059.17534.1 vs. uniprot
Match: A0A482RN91_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RN91_9ARCH)

HSP 1 Score: 108 bits (271), Expect = 5.880e-27
Identity = 67/156 (42.95%), Postives = 90/156 (57.69%), Query Frame = 1
Query:   10 LSVASRVWMVLCVCWYSEESRQNPFYALMVMSWGLVEVPRYLFLLVNLLSPNNVPYPLLWLRYSLFAILYPTGISGEVGC---SIYSLWTYLFTSANPPPLTLLLPNQFNLLYHHGLVIVGILVAYIPLSPVMYSHMVKQRAKK---LGTGAKKAQ 459
            + V SRVW +  V   +  ++ + F+ L   SW LVEVPRYLF  +++   N VPYPL WLRYSLFAILYPTGI+GE+GC   S++ LW      ++ P   L+L     L          ++V Y+P SP MY HM+K R K+   L  G KK +
Sbjct:   49 MQVFSRVWTLWAVMDMAPTAQHSLFFLLACTSWALVEVPRYLFYALSI--ANAVPYPLFWLRYSLFAILYPTGITGELGCMYLSLFELWGKAGGVSDVPMDKLVLMVLIAL----------VVVTYVPGSPTMYKHMLKTRKKQFQELKEGGKKRE 192          
BLAST of mRNA_M-pyrifera_M_contig74059.17534.1 vs. uniprot
Match: A0A1V9YMC0_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMC0_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.830e-26
Identity = 66/143 (46.15%), Postives = 91/143 (63.64%), Query Frame = 1
Query:    1 SFFLSVASRVWMVLCVCWYSEESRQNPFYALMVMSWGLVEVPRYLFLLVNLLSPNNVPYPLLWLRYSLFAILYPTGISGEVGCSIYSLWTYLFTSANPPPLTLLLPNQFNLLYHHGLVIVGILVAYIPLSPVMYSHMVKQRAK 429
            S F+ V+SR+W+V  +     ESR +  + LMVMSWGLVEVPRY F  +NLL  + VP  L +LRY LF +LYP+G++GEV C I SL   L + A     ++ +PN  N+     ++++ I+V YIP  P+MYSHM  QR K
Sbjct:   75 STFMQVSSRLWLVWAINVLCPESRTHWGFVLMVMSWGLVEVPRYAFYALNLL--DAVPNWLFFLRYHLFMVLYPSGVTGEVTCMIKSL-PLLASGAY----SITMPNTHNIAVSLYVIVLIIMVIYIPGLPIMYSHMNVQRKK 210          
BLAST of mRNA_M-pyrifera_M_contig74059.17534.1 vs. uniprot
Match: A0A7S0LUZ0_9EUKA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LUZ0_9EUKA)

HSP 1 Score: 100 bits (250), Expect = 1.020e-24
Identity = 59/117 (50.43%), Postives = 75/117 (64.10%), Query Frame = 1
Query:   82 FYALMVMSWGLVEVPRYLFLLVNLLSPNNVPYPLLWLRYSLFAILYPTGISGEVGCSIYSLWTYLFTSANPPPLTLLLPNQFNLLYHHGLVIVGILVAYIPLSPVMYSHMVKQRAKK 432
            F++L   SWGLVEVPRYLF  +NLL  N VPYPL WLRYSLFA+LYPTGI+GE+GC   +L  Y  T  +     +  P +  +   H   I+ + + YIP SP M+ HMVK R K+
Sbjct:    1 FFSLACTSWGLVEVPRYLFYALNLL--NAVPYPLFWLRYSLFAVLYPTGITGELGCMFQALM-YFMTRVH----FMEQPLERQI---HIASIIFVALTYIPGSPKMFFHMVKTRQKQ 107          
BLAST of mRNA_M-pyrifera_M_contig74059.17534.1 vs. uniprot
Match: A0A1V9YY62_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YY62_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.640e-24
Identity = 65/144 (45.14%), Postives = 93/144 (64.58%), Query Frame = 1
Query:    1 SFFLSVASRVWMVLCVCWYSEESRQNPFYALMVMSWGLVEVPRYLFLLVNLLSPNNVPYPLLWLRYSLFAILYPTGISGEVGCSIYSLWTYLFTSANPPPLTLLLPNQFNLLYHHGLVIVGILVAYIPLSPVMYSHMVKQRAKK 432
            S F+ V+SR+W+V  +     ESR +  + LMV+SWG+VEVPRY F  +NLL  + VP  L +LRY LF +LYP+G++GEV C I +L  YL T A     ++ +PN  N+     +V++ +LV YIP  P+MYSHM  QR ++
Sbjct:  585 STFMQVSSRLWLVWAINVLCPESRTHWGFILMVVSWGMVEVPRYSFYALNLL--DAVPDWLFFLRYHLFMVLYPSGVTGEVTCMIKAL-PYLATGAY----SITMPNPHNIAVSLFVVVLIVLVIYIPGLPIMYSHMNVQRKRE 721          
BLAST of mRNA_M-pyrifera_M_contig74059.17534.1 vs. uniprot
Match: A0A067CBA8_SAPPC (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CBA8_SAPPC)

HSP 1 Score: 102 bits (254), Expect = 4.420e-24
Identity = 62/143 (43.36%), Postives = 89/143 (62.24%), Query Frame = 1
Query:    1 SFFLSVASRVWMVLCVCWYSEESRQNPFYALMVMSWGLVEVPRYLFLLVNLLSPNNVPYPLLWLRYSLFAILYPTGISGEVGCSIYSLWTYLFTSANPPPLTLLLPNQFNLLYHHGLVIVGILVAYIPLSPVMYSHMVKQRAK 429
            S F+ V+SR+W+V  +     ESR +  + LMV SWGLVEVPRY F  +NLL  + VP  L +LRY LF +LYP+G++GEV C + +L   L T A     ++ +PN  N+     ++++  LV Y+P  PVMY+HM  QR +
Sbjct:   75 STFMQVSSRLWLVWAINVLCPESRTHWGFVLMVASWGLVEVPRYAFYALNLL--DAVPDWLFFLRYHLFMVLYPSGVTGEVTCMLKAL-PLLSTGAY----SITMPNTHNIAVSLYVIVLLTLVVYVPGLPVMYTHMNVQRKR 210          
BLAST of mRNA_M-pyrifera_M_contig74059.17534.1 vs. uniprot
Match: A0A5D6YFT2_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YFT2_9STRA)

HSP 1 Score: 101 bits (252), Expect = 9.370e-24
Identity = 61/138 (44.20%), Postives = 86/138 (62.32%), Query Frame = 1
Query:   10 LSVASRVWMVLCVCWYSEESRQNPFYALMVMSWGLVEVPRYLFLLVNLLSPNNVPYPLLWLRYSLFAILYPTGISGEVGCSIYSLWTYLFTSANPPPLTLLLPNQFNLLYHHGLVIVGILVAYIPLSPVMYSHMVKQR 423
            + V+SR+W+V  +     +SR    + LMV+SWGLVEVPRY F  +NL   N VP  L +LRY LF +LYP+G+ GEV C + SL  +L++ A     ++ LPN  N+     + +  +L+ YIP  PVMYSHM+ QR
Sbjct:   87 MQVSSRLWLVWGINVLCPDSRYQFGFPLMVLSWGLVEVPRYSFYALNLF--NKVPAFLTFLRYHLFMVLYPSGVLGEVLCMLSSL-DFLYSGAY----SIQLPNAHNVAASLYVFVTLVLIMYIPGLPVMYSHMLTQR 217          
BLAST of mRNA_M-pyrifera_M_contig74059.17534.1 vs. uniprot
Match: A0A7M7GBU7_APIME (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=4 Tax=Apis TaxID=7459 RepID=A0A7M7GBU7_APIME)

HSP 1 Score: 100 bits (250), Expect = 1.900e-23
Identity = 57/150 (38.00%), Postives = 94/150 (62.67%), Query Frame = 1
Query:   10 LSVASRVWMVLCVCWYSEESRQNPFYAL--MVMSWGLVEVPRYLFLLVNLLSPNNVPYPLLWLRYSLFAILYPTGISGEVGCSIYSLWTYLFTSANPPPLTLLLPNQFNLLYHHGLVIVGILVAYIPLSPVMYSHMVKQRAKKLGTGAKK 453
            + V SRV++V CV   +  +     +AL  M+++W + E+ RY+F  +NL   N  PY + WLRY+LF ILYP G+SGE+ C+ YS   Y  T+++P   +  LPN +N ++ + ++++ ++++YIP  P  Y HM+ QR K +G+ A K
Sbjct:   81 IQVLSRVFVVSCVILATPYNYAASSFALPMMILAWCISEINRYIFYGLNLFGLN--PYFVKWLRYTLFYILYPIGVSGELICT-YSAVKY--TNSHPEAWSYRLPNSWNFIFSYQILLITVMLSYIPFFPQTYMHMIAQRRKNVGSDALK 225          
BLAST of mRNA_M-pyrifera_M_contig74059.17534.1 vs. uniprot
Match: A0A0G4IRI2_PLABS (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IRI2_PLABS)

HSP 1 Score: 100 bits (250), Expect = 2.730e-23
Identity = 56/143 (39.16%), Postives = 87/143 (60.84%), Query Frame = 1
Query:   10 LSVASRVWMVLCVCWYSEESRQNPFYALMVMSWGLVEVPRYLFLLVNLLSPNNVPYPLLWLRYSLFAILYPTGISGEVGCSIYSLWTYLFTSANPPPLTLLLPNQFNLLYHHGLVIVGILVAYIPLSPVMYSHMVKQRAKKLG 438
            L VASR++++  V       + + + A++V +W  VE+PRY +  +NL   + VPYPLLWLRYSLF +LYP GIS E+ C+ +++  +  T       ++L+PN  N      ++I  +++ Y+P SP +Y HMV QR K LG
Sbjct:   88 LQVASRLFILFTVVEQVPAIQDDWYVAMLVGAWACVEIPRYAYYALNLF--DAVPYPLLWLRYSLFIVLYPIGISAELLCAYHAIPHFAATKQ----WSVLMPNMVNFELKFDVLIKMLMLVYVPGSPFLYLHMVHQRKKYLG 224          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74059.17534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812IIB8_9DINO7.270e-3148.25Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A7S3HHK7_9STRA1.390e-2946.53Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A482RN91_9ARCH5.880e-2742.95Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A1V9YMC0_9STRA1.830e-2646.15Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A7S0LUZ0_9EUKA1.020e-2450.43Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A1V9YY62_9STRA1.640e-2445.14Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A067CBA8_SAPPC4.420e-2443.36Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A5D6YFT2_9STRA9.370e-2444.20Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A7M7GBU7_APIME1.900e-2338.00Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A0G4IRI2_PLABS2.730e-2339.16Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74059contigM-pyrifera_M_contig74059:575..1036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue5.4e-19
Seed eggNOG ortholog115417.EPrPW00000017031
KEGG rclassRC00770,RC01095
KEGG koko:K10703
KEGG ReactionR07760,R10827
KEGG Pathwayko00062,ko01040,ko01110,ko01212,map00062,map01040,map01110,map01212
KEGG ModuleM00415
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Source PGD
EggNOG OGs1MFK1@121069,COG5198@1,KOG3187@2759
EC4.2.1.134
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Exons1
Model size462
Cds size462
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816638.3153746-CDS-M-pyrifera_M_contig74059:574..10361622816638.3153746-CDS-M-pyrifera_M_contig74059:574..1036Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74059 575..1036 -
1692278092.0478668-CDS-M-pyrifera_M_contig74059:574..10361692278092.0478668-CDS-M-pyrifera_M_contig74059:574..1036Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74059 575..1036 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74059.17534.1prot_M-pyrifera_M_contig74059.17534.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74059 575..1036 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74059.17534.1

>prot_M-pyrifera_M_contig74059.17534.1 ID=prot_M-pyrifera_M_contig74059.17534.1|Name=mRNA_M-pyrifera_M_contig74059.17534.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp
SFFLSVASRVWMVLCVCWYSEESRQNPFYALMVMSWGLVEVPRYLFLLVN
LLSPNNVPYPLLWLRYSLFAILYPTGISGEVGCSIYSLWTYLFTSANPPP
LTLLLPNQFNLLYHHGLVIVGILVAYIPLSPVMYSHMVKQRAKKLGTGAK
KAQ*
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mRNA from alignment at M-pyrifera_M_contig74059:575..1036-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74059.17534.1 ID=mRNA_M-pyrifera_M_contig74059.17534.1|Name=mRNA_M-pyrifera_M_contig74059.17534.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig74059:575..1036- (Macrocystis pyrifera P11B4 male)
TCTTTCTTCCTCTCAGTCGCAAGTCGTGTTTGGATGGTGTTGTGCGTGTG TTGGTACAGCGAGGAGAGCCGCCAAAACCCGTTTTACGCGCTGATGGTGA TGTCGTGGGGTTTGGTGGAGGTTCCACGGTATTTGTTCCTGTTGGTGAAC TTGTTGAGTCCGAACAACGTGCCGTACCCTCTGCTTTGGCTGCGCTACTC GCTCTTCGCCATCCTCTACCCCACTGGTATTTCTGGAGAAGTGGGGTGCA GCATCTACTCTCTGTGGACGTACCTCTTCACTTCCGCCAACCCACCACCC CTCACGCTCCTCCTCCCAAACCAGTTCAACCTCCTCTACCACCACGGACT GGTCATCGTAGGCATCCTCGTCGCATACATCCCACTCTCCCCTGTCATGT ACTCCCACATGGTCAAGCAGCGAGCAAAGAAACTTGGAACCGGAGCAAAG AAAGCACAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74059:575..1036-

>mRNA_M-pyrifera_M_contig74059.17534.1 ID=mRNA_M-pyrifera_M_contig74059.17534.1|Name=mRNA_M-pyrifera_M_contig74059.17534.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig74059:575..1036- (Macrocystis pyrifera P11B4 male)
TCTTTCTTCCTCTCAGTCGCAAGTCGTGTTTGGATGGTGTTGTGCGTGTG
TTGGTACAGCGAGGAGAGCCGCCAAAACCCGTTTTACGCGCTGATGGTGA
TGTCGTGGGGTTTGGTGGAGGTTCCACGGTATTTGTTCCTGTTGGTGAAC
TTGTTGAGTCCGAACAACGTGCCGTACCCTCTGCTTTGGCTGCGCTACTC
GCTCTTCGCCATCCTCTACCCCACTGGTATTTCTGGAGAAGTGGGGTGCA
GCATCTACTCTCTGTGGACGTACCTCTTCACTTCCGCCAACCCACCACCC
CTCACGCTCCTCCTCCCAAACCAGTTCAACCTCCTCTACCACCACGGACT
GGTCATCGTAGGCATCCTCGTCGCATACATCCCACTCTCCCCTGTCATGT
ACTCCCACATGGTCAAGCAGCGAGCAAAGAAACTTGGAACCGGAGCAAAG
AAAGCACAGTAGTCTTTCTTCCTCTCAGTCGCAAGTCGTGTTTGGATGGT
GTTGTGCGTGTGTTGGTACAGCGAGGAGAGCCGCCAAAACCCGTTTTACG
CGCTGATGGTGATGTCGTGGGGTTTGGTGGAGGTTCCACGGTATTTGTTC
CTGTTGGTGAACTTGTTGAGTCCGAACAACGTGCCGTACCCTCTGCTTTG
GCTGCGCTACTCGCTCTTCGCCATCCTCTACCCCACTGGTATTTCTGGAG
AAGTGGGGTGCAGCATCTACTCTCTGTGGACGTACCTCTTCACTTCCGCC
AACCCACCACCCCTCACGCTCCTCCTCCCAAACCAGTTCAACCTCCTCTA
CCACCACGGACTGGTCATCGTAGGCATCCTCGTCGCATACATCCCACTCT
CCCCTGTCATGTACTCCCACATGGTCAAGCAGCGAGCAAAGAAACTTGGA
ACCGGAGCAAAGAAAGCACAGTAG
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